Irfan Alibay 27c0d79cd1 Turn AFE protocols into multiple units (#1776) ...

* Split the AFE protocol units into setup, simulation, and analysis.

2026-01-22 13:38:57 +00:00

..

_ext

add ruff isort linting rule (#1665)

2025-11-10 21:58:30 +00:00

_sass

Merge branch 'main' of github.com:OpenFreeEnergy/openfe into sideload_examples

2023-10-10 16:36:23 -05:00

_static

update docs theme (#1545)

2025-10-02 10:13:25 -04:00

_templates/autosummary

Autosummary for API reference

2023-07-12 23:37:48 +10:00

cookbook

add pipe example for jq (#1505)

2025-09-12 13:12:56 -07:00

guide

Fix issue 1795 (#1796)

2026-01-16 20:08:36 +00:00

reference

Turn AFE protocols into multiple units (#1776)

2026-01-22 13:38:57 +00:00

tutorials

expose the septop and abfe analysis tutorials (#1664)

2025-11-07 07:25:27 -08:00

CHANGELOG.rst

release/1.8.0 (#1734)

2025-12-08 11:17:28 -08:00

conf.py

add dill mock to fix openfe docs build (#1792)

2026-01-16 07:49:56 -08:00

environment.yaml

drop scipy intersphinx link (#1621)

2025-10-24 12:08:27 -07:00

index.rst

add links to ecosystem on docs landing page (#1619)

2025-11-24 09:26:48 -08:00

installation.rst

update install instructions (#1744)

2025-12-08 13:51:46 -08:00

make.bat

Docsdocsdocs (#66)

2022-02-25 15:25:31 +00:00

Makefile

SepTop Protocol (#1057)

2025-09-23 09:52:11 +01:00

mambaf9t4jj8g5ei

add docs for gathering septop and abfe (#1737)

2025-12-08 08:41:26 -08:00