pub_soft/openfold
3
0
Fork 0
mirror of https://github.com/aqlaboratory/openfold.git synced 2026-06-04 12:44:26 +08:00
Code Issues Packages Projects Releases Wiki Activity

fix path error in scripts/utils.py and logging fix

Browse Source
This commit is contained in:
Jennifer
2024-04-29 06:26:05 -04:00
parent cfb4c19cac
commit 2dd481e12d
2 changed files with 7 additions and 8 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
scripts/utils.py
View File

@@ -34,22 +34,22 @@ def add_data_args(parser: argparse.ArgumentParser):
'--bfd_database_path', type=str, default=None,
)
parser.add_argument(
'--jackhmmer_binary_path', type=Path, default=CONDA_ENV_BINARY_PATH / 'jackhmmer',
'--jackhmmer_binary_path', type=str, default=str(CONDA_ENV_BINARY_PATH / 'jackhmmer'),
)
parser.add_argument(
'--hhblits_binary_path', type=Path, default=CONDA_ENV_BINARY_PATH / 'hhblits',
'--hhblits_binary_path', type=str, default=str(CONDA_ENV_BINARY_PATH / 'hhblits'),
)
parser.add_argument(
'--hhsearch_binary_path', type=str, default=CONDA_ENV_BINARY_PATH / 'hhsearch',
'--hhsearch_binary_path', type=str, default=str(CONDA_ENV_BINARY_PATH / 'hhsearch'),
)
parser.add_argument(
'--hmmsearch_binary_path', type=str, default=CONDA_ENV_BINARY_PATH / 'hmmsearch',
'--hmmsearch_binary_path', type=str, default=str(CONDA_ENV_BINARY_PATH / 'hmmsearch'),
)
parser.add_argument(
'--hmmbuild_binary_path', type=str, default=CONDA_ENV_BINARY_PATH / 'hmmbuild',
'--hmmbuild_binary_path', type=str, default=str(CONDA_ENV_BINARY_PATH / 'hmmbuild'),
)
parser.add_argument(
'--kalign_binary_path', type=str, default=CONDA_ENV_BINARY_PATH / 'kalign',
'--kalign_binary_path', type=str, default=str(CONDA_ENV_BINARY_PATH / 'kalign'),
)
parser.add_argument(
'--max_template_date', type=str,