mirror of
https://github.com/aqlaboratory/openfold.git
synced 2026-06-04 12:44:26 +08:00
54 lines
1.6 KiB
Bash
54 lines
1.6 KiB
Bash
#!/bin/bash
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#
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# Copyright 2021 DeepMind Technologies Limited
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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# Downloads and unzips all required data for AlphaFold.
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#
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# Usage: bash download_all_data.sh /path/to/download/directory
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set -e
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if [[ $# -eq 0 ]]; then
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echo "Error: download directory must be provided as an input argument."
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exit 1
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fi
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if ! command -v aria2c &> /dev/null ; then
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echo "Error: aria2c could not be found. Please install aria2c (sudo apt install aria2)."
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exit 1
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fi
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DOWNLOAD_DIR="$1"
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DOWNLOAD_MODE="${2:-full_dbs}" # Default mode to full_dbs.
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if [[ "${DOWNLOAD_MODE}" != full_dbs && "${DOWNLOAD_MODE}" != reduced_dbs ]]
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then
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echo "DOWNLOAD_MODE ${DOWNLOAD_MODE} not recognized."
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exit 1
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fi
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SCRIPT_DIR="$(dirname "$(realpath "$0")")"
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echo "Downloading PDB70..."
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bash "${SCRIPT_DIR}/download_pdb70.sh" "${DOWNLOAD_DIR}"
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echo "Downloading PDB mmCIF files..."
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bash "${SCRIPT_DIR}/download_pdb_mmcif.sh" "${DOWNLOAD_DIR}"
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if [[ -d openfold/resources/params ]]; then
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ln -s openfold/resources/params "${DOWNLOAD_DIR}/params"
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ln -s openfold/resources/openfold_params "${DOWNLOAD_DIR}/params"
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fi
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echo "All data downloaded."
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