mirror of
https://github.com/aqlaboratory/openfold.git
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68 lines
2.2 KiB
Bash
Executable File
68 lines
2.2 KiB
Bash
Executable File
#!/bin/bash
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#
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# Copyright 2021 DeepMind Technologies Limited
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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# Downloads and unzips OpenFold parameters from Google Drive. Alternative to
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# the HuggingFace version.
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#
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# Usage: bash download_openfold_params_gdrive.sh /path/to/download/directory
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set -e
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if [[ $# -eq 0 ]]; then
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echo "Error: download directory must be provided as an input argument."
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exit 1
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fi
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FILE_ID="1GVzZA2nbdBbz6TKydvzquhfELJ3Movnb"
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FILENAME="openfold_params_07_22.tar.gz"
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download_from_gdrive() {
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FILE_ID="$1"
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OUT_DIR="$2"
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MSG=$(wget \
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--quiet \
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--save-cookies /tmp/cookies_$$.txt \
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--keep-session-cookies \
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--no-check-certificate \
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"https://docs.google.com/uc?export=download&id=${FILE_ID}" \
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-O- \
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)
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CONFIRM=$(echo $MSG | sed -rn "s/.*confirm=([0-9A-Za-z_]+).*/\1\n/p")
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FILENAME=$(echo $MSG | sed -e "s/.*<a href=\"\/open?id=${FILE_ID}\">\(.*\)<\/a> (.*/\1/")
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FILEPATH="${OUT_DIR}/${FILENAME}"
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wget \
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--quiet \
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--load-cookies /tmp/cookies_$$.txt \
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"https://docs.google.com/uc?export=download&confirm=${CONFIRM}&id=${FILE_ID}" \
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-O "${FILEPATH}"
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rm /tmp/cookies_$$.txt
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echo $FILEPATH
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}
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DOWNLOAD_DIR="$1"
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mkdir -p "${DOWNLOAD_DIR}"
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DOWNLOAD_PATH=$(download_from_gdrive $FILE_ID "${DOWNLOAD_DIR}")
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DOWNLOAD_FILENAME=$(basename "${DOWNLOAD_PATH}")
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if [[ $FILENAME != $DOWNLOAD_FILENAME ]]; then
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echo "Error: Downloaded filename ${DOWNLOAD_FILENAME} does not match expected filename ${FILENAME}"
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rm "${DOWNLOAD_PATH}"
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exit
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fi
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tar --extract --verbose --file="${DOWNLOAD_PATH}" \
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--directory="${DOWNLOAD_DIR}" --preserve-permissions
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rm "${DOWNLOAD_PATH}"
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