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36b9a8ea9ce2145b8ff0fb6a23bb5ce220844707
openfold/scripts
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Gustaf Ahdritz 36b9a8ea9c Add script for generating sample feature dict
2021-12-30 19:51:50 -05:00
..
activate_conda_env.sh
Add conda env scripts
2021-09-22 01:29:49 -04:00
build_deepspeed_config.py
Add bfloat16 support to DeepSpeed config script
2021-11-29 19:03:40 -05:00
colabfold_search.sh
Add MMseqs2 MSA generation
2021-11-09 02:57:53 -05:00
data_dir_to_fasta.py
Add more ProteinNet functionality
2021-11-10 01:53:46 -05:00
deactivate_conda_env.sh
Add conda env scripts
2021-09-22 01:29:49 -04:00
download_alphafold_dbs.sh
Fix AlphaFold DB download script
2021-12-19 15:44:13 -05:00
download_alphafold_params.sh
Initial commit
2021-09-17 18:34:59 -04:00
download_bfd.sh
Added the shell script to download the BFD database for HHBlits queries.
2021-10-08 17:36:34 -04:00
download_colabfold_envdb.sh
Add MMseqs2 MSA generation
2021-11-09 02:57:53 -05:00
download_data.sh
Add MMseqs2 MSA generation
2021-11-09 02:57:53 -05:00
download_mgnify.sh
Added the shell script to download the Mgnify database for JackHMMer MSA queries.
2021-10-08 17:52:48 -04:00
download_mmseqs_dbs.sh
Add MMseqs2 MSA generation
2021-11-09 02:57:53 -05:00
download_pdb70.sh
Added the shell script to download the PDB70 database.
2021-10-08 18:26:40 -04:00
download_pdb_mmcif.sh
Added the shell script to download the PDB mmCIF database.
2021-10-08 18:27:20 -04:00
download_small_bfd.sh
Added the shell script to download the small BFD database.
2021-10-08 18:27:48 -04:00
download_uniclust30.sh
Added the shell script to download the uniclust30 database.
2021-10-08 18:28:10 -04:00
download_uniref30.sh
Add MMseqs2 MSA generation
2021-11-09 02:57:53 -05:00
download_uniref90.sh
Added the shell script to download the uniref90 database.
2021-10-08 18:28:33 -04:00
generate_alphafold_feature_dict.py
Add script for generating sample feature dict
2021-12-30 19:51:50 -05:00
generate_mmcif_cache.py
minor fixes
2021-10-24 10:21:12 -07:00
install_hh_suite.sh
Add script for installing the HH-suite
2021-10-22 18:01:58 -04:00
install_third_party_dependencies.sh
add dllogger to conda env
2021-11-02 06:03:49 -07:00
precompute_alignments_mmseqs.py
Update precompute_alignments_mmseqs.py
2021-11-29 15:11:41 -06:00
precompute_alignments.py
Make AlignmentRunner more flexible
2021-12-19 22:08:04 -05:00
prep_mmseqs_dbs.sh
Fix mmseqs script bug
2021-12-10 18:33:23 -05:00
prep_proteinnet_msas.py
Rename prepare_proteinnet_msas.py to prep_proteinnet_msas.py
2021-12-20 00:50:20 -05:00
run_unit_tests.sh
Add low-memory attention (still needs to be incorporated)
2021-12-17 18:00:06 -05:00
unpack_proteinnet.py
Begin to add ProteinNet support (WIP)
2021-11-09 23:53:14 -05:00
utils.py
Make AlignmentRunner more flexible
2021-12-19 22:08:04 -05:00
vars.sh
Add conda env scripts
2021-09-22 01:29:49 -04:00
zero_to_fp32.py
Fix model checkpointing bug
2021-10-26 16:16:25 -04:00