Gustaf Ahdritz 71fabe1e3b Fix mmseqs script bug

2021-12-10 18:33:23 -05:00

..

activate_conda_env.sh

Add conda env scripts

2021-09-22 01:29:49 -04:00

build_deepspeed_config.py

Add bfloat16 support to DeepSpeed config script

2021-11-29 19:03:40 -05:00

colabfold_search.sh

Add MMseqs2 MSA generation

2021-11-09 02:57:53 -05:00

data_dir_to_fasta.py

Add more ProteinNet functionality

2021-11-10 01:53:46 -05:00

deactivate_conda_env.sh

Add conda env scripts

2021-09-22 01:29:49 -04:00

download_alphafold_dbs.sh

Add MMseqs2 MSA generation

2021-11-09 02:57:53 -05:00

download_alphafold_params.sh

Initial commit

2021-09-17 18:34:59 -04:00

download_bfd.sh

Added the shell script to download the BFD database for HHBlits queries.

2021-10-08 17:36:34 -04:00

download_colabfold_envdb.sh

Add MMseqs2 MSA generation

2021-11-09 02:57:53 -05:00

download_data.sh

Add MMseqs2 MSA generation

2021-11-09 02:57:53 -05:00

download_mgnify.sh

Added the shell script to download the Mgnify database for JackHMMer MSA queries.

2021-10-08 17:52:48 -04:00

download_mmseqs_dbs.sh

Add MMseqs2 MSA generation

2021-11-09 02:57:53 -05:00

download_pdb70.sh

Added the shell script to download the PDB70 database.

2021-10-08 18:26:40 -04:00

download_pdb_mmcif.sh

Added the shell script to download the PDB mmCIF database.

2021-10-08 18:27:20 -04:00

download_small_bfd.sh

Added the shell script to download the small BFD database.

2021-10-08 18:27:48 -04:00

download_uniclust30.sh

Added the shell script to download the uniclust30 database.

2021-10-08 18:28:10 -04:00

download_uniref30.sh

Add MMseqs2 MSA generation

2021-11-09 02:57:53 -05:00

download_uniref90.sh

Added the shell script to download the uniref90 database.

2021-10-08 18:28:33 -04:00

generate_mmcif_cache.py

minor fixes

2021-10-24 10:21:12 -07:00

install_hh_suite.sh

Add script for installing the HH-suite

2021-10-22 18:01:58 -04:00

install_third_party_dependencies.sh

add dllogger to conda env

2021-11-02 06:03:49 -07:00

precompute_alignments_mmseqs.py

Update precompute_alignments_mmseqs.py

2021-11-29 15:11:41 -06:00

precompute_alignments.py

Add alternative fasta file extension

2021-11-22 16:26:05 -05:00

prep_mmseqs_dbs.sh

Fix mmseqs script bug

2021-12-10 18:33:23 -05:00

prepare_proteinnet_msas.py

Add description to ProteinNet MSA script

2021-10-26 00:40:37 -04:00

run_unit_tests.sh

Bring tests up to speed

2021-10-19 23:07:09 -04:00

unpack_proteinnet.py

Begin to add ProteinNet support (WIP)

2021-11-09 23:53:14 -05:00

utils.py

Made initialization consistent for template_featurizer in all modules.

2021-12-10 18:58:56 -04:00

vars.sh

Add conda env scripts

2021-09-22 01:29:49 -04:00

zero_to_fp32.py

Fix model checkpointing bug

2021-10-26 16:16:25 -04:00