mirror of
https://github.com/rdk/p2rank.git
synced 2026-06-04 12:44:24 +08:00
33 lines
1.1 KiB
Groovy
33 lines
1.1 KiB
Groovy
import cz.siret.prank.program.params.Params
|
|
|
|
/*
|
|
* P2Rank configuration for use with AlphaFold DB models (also NMR and Cryo-EM structures).
|
|
* Same as default.groovy, but doesn't use "bfactor" as a feature.
|
|
*/
|
|
(params as Params).with {
|
|
|
|
dataset_base_dir = "../../p2rank-datasets"
|
|
|
|
output_base_dir = "../../p2rank-results/${version}"
|
|
|
|
visualizations = false
|
|
|
|
fail_fast = true
|
|
|
|
log_to_console = false
|
|
|
|
//===========================================================================================================//
|
|
|
|
model = "alphafold"
|
|
|
|
features = ["chem","volsite","protrusion"]
|
|
|
|
//===========================================================================================================//
|
|
|
|
zscoretp_transformer = "{models_dir}/_score_transform/alphafold_ZscoreTpTransformer.json"
|
|
probatp_transformer = "{models_dir}/_score_transform/alphafold_ProbabilityScoreTransformer.json"
|
|
zscoretp_res_transformer = "{models_dir}/_score_transform/residue/alphafold_ZscoreTpTransformer.json"
|
|
probatp_res_transformer = "{models_dir}/_score_transform/residue/alphafold_ProbabilityScoreTransformer.json"
|
|
|
|
}
|