mirror of
https://github.com/rdk/p2rank.git
synced 2026-06-04 12:44:24 +08:00
108 lines
2.3 KiB
Groovy
108 lines
2.3 KiB
Groovy
apply plugin: 'groovy'
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apply plugin: 'java'
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apply plugin: 'idea'
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group = 'cz.siret'
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version = '2.0_RC1'
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description = 'Ligand binding site prediction based on machine learning.'
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allprojects {
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apply plugin: 'java'
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sourceCompatibility = 1.8
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targetCompatibility = 1.8
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}
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repositories {
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jcenter()
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mavenCentral()
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mavenLocal()
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maven {
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url = "http://www.biojava.org/download/maven/"
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}
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maven {
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url = "https://maven.ch.cam.ac.uk/"
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}
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flatDir(dirs: 'lib')
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}
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sourceSets {
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main {
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resources {
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exclude 'scripts/out/*'
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exclude 'models/*'
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}
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}
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}
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processResources {
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filter org.apache.tools.ant.filters.ReplaceTokens, tokens: [
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"project_version": project.version
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]
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}
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task(console, dependsOn: 'classes', type: JavaExec) {
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main = 'groovy.ui.Console'
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classpath = sourceSets.test.runtimeClasspath
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}
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task copyDependenciesToDist( type: Copy ) {
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into "$buildDir/../distro/bin/lib"
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from configurations.runtime
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}
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task copyBinaryToDist( type: Copy ) {
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dependsOn jar
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into "$buildDir/../distro/bin"
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from "$buildDir/bin"
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include "*.jar"
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}
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assemble {
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dependsOn processResources
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dependsOn copyBinaryToDist
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dependsOn copyDependenciesToDist
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}
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jar {
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archiveName = "p2rank.jar"
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destinationDir = file("build/bin")
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manifest {
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attributes 'Main-Class': 'cz.siret.p2rank.program.Main'
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}
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}
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clean {
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delete "$buildDir/../distro/bin/lib"
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}
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dependencies {
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compile 'org.codehaus.groovy:groovy-all:2.4.7'
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compile 'org.codehaus.gpars:gpars:1.2.1'
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compile "org.apache.commons:commons-lang3:3.4"
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compile "com.google.guava:guava:19.0"
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compile 'org.slf4j:slf4j-api:1.7.21'
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compile 'org.apache.logging.log4j:log4j-slf4j-impl:2.5'
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compile 'org.biojava:biojava-core:4.2.4'
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compile 'org.biojava:biojava-alignment:4.2.4'
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compile 'org.biojava:biojava-structure:4.2.4-rdk1'
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compile 'org.openscience.cdk:cdk-qsarmolecular:1.5.13' // for NumericalSurface class
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compile 'org.openscience.cdk:cdk-data:1.5.13' // for Atom class
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compile 'nz.ac.waikato.cms.weka:weka-dev:3.9.0'
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compile files('lib/biojava-structure-4.2.4-rdk1.jar') // customized fork for pocket-rank
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compile fileTree(dir: 'lib', include: '*.jar')
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testCompile 'junit:junit:4.12'
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}
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