Jarrett Johnson
74894e01da
Generic CGO Render
2022-03-08 15:16:16 -05:00
Thomas Holder
dc2aff4133
Refactor: Doxygen comments, ObjectMoleculeUpdateNeighbors
...
- Use proper doxygen syntax for all function comments
- ObjectMoleculeUpdateNeighbors allow const argument
- Remove obsolete ObjectMolecule::BondCounter
2021-01-14 15:23:06 +01:00
Jarrett Johnson
3d18fe3783
use standard containers in CSelector; CSelector split
2020-01-10 16:52:28 +01:00
Thomas Holder
4f50d7568a
eliminate pymol::vla non-const legacy VLA cast
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Avoid assignment of pymol::vla<T> return values to T*.
Refactoring to facilitate this:
- const-correctness (const T* cast still works)
- .data()
- T* -> pymol::vla<T> function arguments
2019-09-23 15:56:55 +02:00
Thomas Holder
1edb8363f4
UtilGetSecondsEpoch
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- document UtilGetSeconds
- make ViewElemInterpolate timing interpolation more robust (would fail
with large "timing" values)
2019-02-21 18:41:02 +01:00
Thomas Holder
b59ce09d8a
refactor: pymol::malloc<T>
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- use typed/namespaced malloc wrapper
- remove Alloc et al.
- remove mmalloc et al.
- remove CINTERFACE define
2019-02-21 17:41:58 +01:00
Jarrett Johnson
b5bc074b9b
Replaced old Queue impl with std::queue
2018-12-06 08:51:23 +01:00
Thomas Holder
f21c61958e
Graphics refactoring, ported from Incentive PyMOL
2018-07-03 20:19:12 +02:00
Thomas Holder
665aa6884a
fix wildcard, fix PDB 99999 crash, PQR parsing...
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* fix selection wildcard (sf.net/p/pymol/bugs/209)
* fix PDB atom id > 99999 crash
* more robust PQR parsing
* pymol2.PyMOL() context manager
* new setting: cif_metalc_as_zero_order_bonds
* new setting sdf_write_zero_order_bonds
* cif: accept _chem_comp_bond.type alias for _chem_comp_bond.value_order
* better support for mingwpy compiler (Christoph Gohlke)
2018-06-08 10:52:36 +00:00
Thomas Holder
4bbe42513c
stick_round_nub, UTF-8, display_scale_factor, ...
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* stick_round_nub for COLLADA export
* UTF-8 in feedback
* display_scale_factor (ported from Incentive PyMOL)
* dx map import: support "type float" and skewed delta
2018-02-28 13:16:16 +00:00
Thomas Holder
5cbfe6b0d4
fix invalid memory access during PyMOL_Stop
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- https://sourceforge.net/p/pymol/bugs/162/
- Free ShaderMgr after Scene
- check (G != NULL) in MainOnExit
- https://sourceforge.net/p/pymol/bugs/161/
apply clang logical-op-parentheses suggestion
- more `const char *` arguments refactoring
2015-03-16 18:58:36 +00:00
Thomas Holder
22fdfe3e81
fixed roving detail/density demos, removed unused code
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* fixed roving density and roving detail demos (regression from last commit)
http://sourceforge.net/p/pymol/bugs/156
* fix "narrowing conversion" C++ errors
* removed unused code and preprocessors:
_PYMOL_GL_DRAWARRAYS
_PYMOL_GL_CALLLISTS
_PYMOL_CGO_DRAWARRAYS
_PYMOL_CGO_DRAWBUFFERS
OPENGL_ES_1
OPENGL_ES_2
* removed deprecated "register" specifier
2015-03-13 22:19:47 +00:00
Thomas Holder
f42840260b
c++ for all PyMOL c files
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- renaming files c -> cpp
- c++ specific syntax (::)
2014-09-08 13:42:11 +00:00
