Jarrett Johnson
57daee0b7e
Refactor Result to include less across source files
2025-09-26 12:07:31 -04:00
Jarrett Johnson
567357fb19
PYMOL-5102: Refactor Object Slice rendering logic
2025-09-26 12:07:30 -04:00
Jarrett Johnson
7b10fa0e84
PYMOL-5089: MapType refactor
2025-09-26 12:07:26 -04:00
Jarrett Johnson
eb606c33c8
Remove unused returnData
2024-08-30 10:09:08 -04:00
Jarrett Johnson
758cec3380
Make numpy2 compatible
2024-08-27 20:06:57 -04:00
Jarrett Johnson
83f11bc317
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
Jarrett Johnson
fbfda4a257
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
Jarrett Johnson
1180fec349
Replace makeshift C++17 with standard
2024-04-10 12:31:16 -04:00
Jarrett Johnson
74894e01da
Generic CGO Render
2022-03-08 15:16:16 -05:00
Jarrett Johnson
07d7a790f0
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
Jarrett Johnson
65835f9991
Remove OOMac
2021-07-07 12:03:25 -04:00
Thomas Holder
d5d05f19c9
PYMOL-3624 Handle map.gz and mrc.gz extensions
2021-03-26 14:30:12 +01:00
Thomas Holder
491e9c5a4d
load_raw dx support
2021-02-18 19:33:11 +01:00
Jarrett Johnson
355c45d229
Place CObject in pymol namespace
2021-02-11 19:14:06 +01:00
Thomas Holder
f84389f14f
Refactor CCrystal and CSymmetry
...
- Make members private
- Add getters and setters
- Remove CrystalUpdate, SymmetryUpdate, SymmetryFree
- Remove unused CCrystal members (Norm, RecipDim, UnitCellVolume)
- Add CCrystal unit test
2020-12-11 13:57:26 +01:00
Thomas Holder
7833037c5e
CGOOptimizeToVBO: Call CGOCombineBeginEnd
...
CGOOptimizeToVBONotIndexed and CGOOptimizeToVBOIndexed will
automatically call CGOCombineBeginEnd if the input CGO has Begin/End
operations. They will also set `use_shader` on the CGO.
Fixes `set cgo_debug; wizard demo, raster3d`
Eliminate various CGOFree calls by using unique_ptr.
2020-12-11 13:01:38 +01:00
Thomas Holder
a686d16fc7
Cleanup: SymmetryAttemptGeneration, ObjectStateGetMatrix
...
- ObjectStateGetMatrix const-correctness
- Make SymmetryAttemptGeneration "private" and call it from getNSymMat()
- match_info: Silence -Wnon-c-typedef-for-linkage warning
2020-12-03 18:15:45 +01:00
Thomas Holder
a170bc4989
Improve error handling for .dx loading
...
Do not create an empty map object if loading fails.
2020-12-03 18:10:46 +01:00
Thomas Holder
7ad3b9d11b
CField refactoring
...
New member functions to replace data access macros:
- CField::get
- CField::ptr
New CFieldTyped derived class with typed accessors.
2020-10-16 11:15:55 +02:00
Jarrett Johnson
4431dd0ce2
Settings copied on object copy
2020-10-16 11:07:17 +02:00
Thomas Holder
08c9dff871
PYMOL-3533 Refactor Rep as polymorphic type (2)
...
Part 2: virtual member functions
2020-09-30 09:46:26 +02:00
Jarrett Johnson
1c26a96739
Named Renderpasses
2020-07-03 15:00:38 +02:00
Thomas Holder
48931fa8d7
DX map import: binary support (*.dxbin)
2020-06-05 09:13:07 +02:00
Jarrett Johnson
6aad8574c4
pymol::Result color; remove_picked; move, map_trim, map_set, origin
2020-05-05 07:59:59 +02:00
Thomas Holder
bdf1c3a0dc
fix PYMOL-3375 map_set crash with missing states
2020-04-23 14:11:46 +02:00
Thomas Holder
8b9efcc028
refactor: use more pymol::Result
2020-04-23 14:11:17 +02:00
Thomas Holder
737cd4f65f
CObject::getCurrentState refactoring
...
fixes:
PYMOL-3388
PYMOL-3390
PYMOL-3391
2020-03-13 09:09:38 +01:00
Thomas Holder
bd1f8970aa
fix multi-state map PSE loading
2020-03-13 08:57:59 +01:00
Thomas Holder
1d98290033
refactor symmetry function
...
get_symmetry
set_symmetry
symmetry_copy
2020-02-20 12:31:22 +01:00
Jarrett Johnson
aae0b18a0f
refactor ObjectMapState
2020-02-20 12:29:45 +01:00
Thomas Holder
8b1fa009ad
Distinguish mrc/map/ccp4 extensions
2020-01-22 11:52:15 +01:00
Pedro Lacerda
bdc9b11de9
cmd.dump support for maps
...
Closes #67
2019-12-03 13:47:45 +01:00
Jarrett Johnson
14e5cefb94
ObjectMesh refactor
2019-11-27 13:30:40 +01:00
Jarrett Johnson
e7a2919f68
field refactor
2019-11-27 13:15:15 +01:00
Thomas Holder
5306f2252e
generalize object matrix operations
2019-10-29 16:24:26 +01:00
Thomas Holder
75f06a974e
CObject function pointers -> virtual methods
2019-10-29 16:24:12 +01:00
Jarrett Johnson
00473b5656
C++ inheritance for Object classes
2019-09-04 18:18:01 +02:00
Thomas Holder
27014c9e93
OOAlloc malloc -> new
2019-08-13 17:08:59 +02:00
Nandini Naidu
7dc7091a40
Converted C VLAs to C++ VLAs, managed combination C and C++ memmory allocation issues.
2019-08-13 16:33:10 +02:00
Nandini Naidu
1b017594ae
symmetry class changes to make deep copyable
2019-08-13 16:20:41 +02:00
Thomas Holder
abe86e10fc
PYMOL-3260 MRC with ORIGIN -> ignore N*START
2019-08-13 16:11:56 +02:00
Jarrett Johnson
13d58ca552
map_set copy bug fix - Fixes #41
2019-06-28 12:38:47 -04:00
Thomas Holder
035d6fe611
C++ inheritance for all CObject subclasses
2019-03-29 13:36:14 +01:00
Thomas Holder
c7ec54efcf
CCP4 export: MRC 2000 ORIGIN
2019-03-29 13:09:11 +01:00
Thomas Holder
b59ce09d8a
refactor: pymol::malloc<T>
...
- use typed/namespaced malloc wrapper
- remove Alloc et al.
- remove mmalloc et al.
- remove CINTERFACE define
2019-02-21 17:41:58 +01:00
Thomas Holder
895840e4f7
PYMOL-3155 MRC 2000 ORIGIN
2018-11-15 16:44:19 +01:00
Jarrett Johnson
fde67f2d9b
PYMOL-3098 ScenePickVLA Refactor
2018-11-15 16:44:02 +01:00
Thomas Holder
4f3c781a74
cleanup: compiler warnings
...
-Wdangling-else
-Wmisleading-indentation
-Wmismatched-tags
-Wparentheses
-Wsometimes-uninitialized
-Wunused-but-set-variable
-Wunused-function
-Wunused-label
-Wunused-variable
2018-08-16 19:00:17 +02:00
Thomas Holder
90939028a3
const correctness for Color.cpp
2018-07-03 20:31:13 +02:00
Thomas Holder
f21c61958e
Graphics refactoring, ported from Incentive PyMOL
2018-07-03 20:19:12 +02:00
