mirror of
https://github.com/schrodinger/pymol-open-source.git
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1e324badee
* fast MMTF load support in C++ (adds msgpack-c dependency) * extra_fit: report RMS for method=cealign; Thanks to Hongbo Zhu * CTRL-L ligand zoom * preset > classified (auto_show_classified equivalent) * preset > interface (ported from Incentive PyMOL 1.8.0) * set_key auto-completion * command completion for selection language * fix connect_mode=4 for N-H1 and N-H3 * fix CGO ALPHA and dup COLOR issue
282 lines
8.2 KiB
Plaintext
282 lines
8.2 KiB
Plaintext
----------------------------------------------------------------------
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PyMOL is Copyright (c) Schrodinger, LLC
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http://www.pymol.org
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----------------------------------------------------------------------
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PyMOL is an OPEN SOURCE program distributed under the "Python" license.
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Please see the LICENSE file for additional information.
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----------------------------------------------------------------------
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See INSTALL for installation instructions
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----------------------------------------------------------------------
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The PyMOL Team:
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NOTE: this list has not been updated since Fall 2003. Since then, the
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PyMOL effort has grown to such an extent that it is no longer
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practical to recognize everyone individually. Fortunately, a public
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record of participation exists and can be appreciated on the internet,
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and especially via the PyMOL mailing list archives. Suffice it to say
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that the PyMOL user community now numbers well into the thousands and
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includes scientists, students, and educators worldwide, spread
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throughout academia and the biotechnology and pharmaceutical
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industries. Though Schrodinger, LLC specifically supports and
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maintains the PyMOL code base, the project can only continue to
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succeed through the sponsorship and participation of the broader
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community.
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See the AUTHORS file for additional authors.
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Founder and Principal Author:
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Warren L. DeLano
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Major Authors (5000+ lines of code):
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Ralf W. Grosse-Kunstleve (SGLite Module -- inactivated as of 2008)
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Minor Authors (500+ lines of code):
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Scott Dixon (Metaphorics CEX support)
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Filipe Maia (Slice Objects)
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Other Contributors: These are the people who have gone out of
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their way to help the project with their ideas, actions,
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advice, hardware donations, testing, information, sponsorship,
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peer support, or code snippets.
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Daan van Aalten
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Paul Adams
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Stephen Adler
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Jun Aishima
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Dennis Allison
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Ricardo Aparicio
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Daniel Appelman
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Diosdado "Rey" Banatao
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Michael Banck
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Ulrich Baumann
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Joseph Becker
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Balaji Bhyravbhatla
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Jeff Bizzaro
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Jeff Blaney
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Juergen Bosch
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Michael Bower
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Sarina Bromberg
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Axel Brunger
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Robert Campbell
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Bronwyn Carlisle
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Duilio Cascio
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Julien Chiron
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Shawn Christensen
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Scott Classen
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David Cooper
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Larry Coopet
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Jacob Corn
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Ben Cornett
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Andrew Dalke
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Koen van der Drift
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Harry Dailey
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Byron DeLaBarre
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Bill DeGrado
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Thomas Earnest
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Nathaniel Echols
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John Eksterowicz
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Erik Evensen
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David Fahrney
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Tim Fenn
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Thierry Fischmann
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Michael Ford
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Esben Peter Friis
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Kevin Gardner
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R. Michael Garavito
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John Gerig
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Jonathan Greene
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Michael Goodman
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Joel Harp
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Reece Hart
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Richard Hart
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Peter Haebel
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Matt Henderson
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Douglas Henry
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Possu Huang
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Uwe Hoffmann
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Jenny Hinshaw
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Carly Huitema
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Bjorn Kauppi
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Greg Landrum
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Robert Lawrence Kehrer
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Tom Lee
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Eugen Leitl
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Ken Lind
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Jules Jacobsen
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Luca Jovine
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Andrey Khavryuchenko
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David Konerding
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Greg Landrum
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Michael Love
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Tadashi Matsushita
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Genevieve Matthews
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Gerry McDermott
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Robert McDowell
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Gustavo Mercier
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Naveen Michaud-Agrawal
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Aaron Miller
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Holly Miller
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Tim Moore
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Kelley Moremen
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Hideaki Moriyama
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Nigel Moriarty
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Geoffrey Mueller
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Cameron Mura
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Florian Nachon
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Hanspeter Niederstrasser
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Michael Nilges
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Hoa Nguyen
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Shoichiro Ono
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Chris Oubridge
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Andre Padilla
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Jay Pandit
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Ezequiel "Zac" Panepucci
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Robert Phillips
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Hans Purkey
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Rama Ranganathan
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Michael Randal
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Daniel Ricklin
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Ian Robinson
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Eric Ross
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Kristian Rother
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Marc Saric
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Bill Scott
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Keana Scott
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Denis Shcherbakov
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Goede Schueler
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Paul Sherwood
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Ward Smith
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John Somoza
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David van der Spoel
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Paul Sprengeler
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Matt Stephenson
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Peter Stogios
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John Stone
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Charlie Strauss
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Michael Summers
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Brian Sutton
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Hanna and Abraham Szoke
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Rod Tweten
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Andras Varadi
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Scott Walsh
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Pat Walters
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Mark White
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Michael Wilson
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Dave Weininger
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Chris Wiesmann
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Charles Wolfus
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Richard Xie
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Miscellaneous Code Snippets Lifted From:
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Thomas Malik (fast matrix-multiply code)
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John E. Grayson (Author of "Python and Tkinter")
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Doug Hellmann (Wrote code that JEG later modified.)
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Open-Source "Enablers" (essential, but not directly involved):
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Brian Paul (Mesa)
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Mark Kilgard (GLUT)
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Guido van Rossum (Python)
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Linus Torvalds (Linux Kernel)
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Precision Insight (DRI)
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The XFree86 Project (Free Windowing System)
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VA Linux (CVS Hosting)
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Richard Stallman/Free Software Foundation (GNU Suite)
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The unknown authors of EISPACK (Linear Algebra)
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Graphics Technology "Enablers" (essential!)
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3dfx (RIP)
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nVidia
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ATI
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----------------------------------------------------------------------
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Specific Acknowledgments (last updated around 2005):
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* Thanks to Joni W. Lam for making the business work.
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* Thanks to John Stone and John Furr for being such excellent
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colleagues.
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* Thanks to Ragu Bharadwaj and Marcin Joachimiak for Java expertise
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and encouragement.
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* Thanks to Apple Computer for continued encouragement, assistance,
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and HLAs in support of Mac development. Thanks especially to
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Robert Kehrer for creating so many fun opportunities over the years.
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* Thanks to Aaron Miller (GlaxoSmithKline) for a continuous stream of
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thoughtful opinions and suggestions.
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* Thanks to Dave Weininger for suggesting the "roving" feature and for
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being such an inspirational friend and mentor.
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* Thanks to Matt Hahn and Dave Rogers for proving that it can also be
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done, again.
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* Thanks to Mick Savage for providing experienced practical advice on
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the marketing of scientific software.
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* Thanks to Ian Matthew for 3D experience and perspective.
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* Thanks for Jeff Blaney for numerous insightful discussions.
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* Thanks to Elizabeth Pehrson for making this a team effort.
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* Thanks to Erin Bradley for schooling in focus and vision.
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* Thanks to Vera Povolona for catalytic clarity and introspection.
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* Thanks to Anthony Nichols for proving that it can be done, yet again.
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* Thanks to Thompson Doman for timely Open-Source validation.
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* Thanks to Manfred Sippl for making it all seem so simple.
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* Thanks to Kristian Rother for all his excellent work building on the
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PyMOL foundation, and in helping others learn to use the software.
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* Thanks to Dave Weininger, Scott Dixon, Roger Sayle, Andrew Dalke,
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Anthony Nichols, Dick Cramer, and David Miller, as well as rest of
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the Daylight and OpenEye teams for thoughtful discussions on PyMOL
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and open-source software during my 2002 pilgrimage to Sante Fe, NM.
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* Thanks to Ralf Grosse-Kunstleve for his contribution of the "sglite"
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space group and symmetry handling module.
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* Thanks to the scientists and management of Sunesis Pharmaceuticals
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for supporting PyMOL development since program inception.
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* Thanks to the Computational Crystallography Initiative (LBNL)
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developers for their encouragement, ideas, and support.
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* Thanks to Scott Walsh for being the first individual to provide
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financial support for PyMOL.
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* Thanks to the hundreds of individuals, companies, and institutions
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that have provided financial support for the project.
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* Thanks to Brian Paul and the Precision Insight team for development
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of Mesa/DRI which greatly assisted in the early development of PyMOL.
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* Thanks to Michael Love for the first major outside port of PyMOL
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(to GNU-Darwin/OSX) and for believing in the cause.
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* Thanks for Paul Sherwood for making a concerted effort to develop
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using PyMOL long before the software and vision had matured.
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* Thanks to Jay Ponder for thoughtful email discussions on Tinker and
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the role of open-source scientific software.
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* Thanks to hundreds of PyMOL users for the many forms of feedback,
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bug sightings, and encouragement they've provided.
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