pymol-open-source

plugins

Refactor list_scan to handle new pymol-scripts-repo layout (#499 )

2026-03-01 10:05:07 -05:00

Qt

port over qt6 migrations

2026-02-24 01:35:00 -05:00

stereochemistry

fix wildcard, fix PDB 99999 crash, PQR parsing...

2018-06-08 10:52:36 +00:00

wizard

Fix pep8 W605 warnings

2023-12-21 12:20:41 -05:00

__init__.py

Better warning message for GLUT/Tk fallback

2021-04-20 09:18:32 +02:00

__main__.py

Fix return value for python --testing

2020-09-03 09:35:38 +02:00

_gui.py

PYMOL_4670: Updating links in help menu

2025-09-26 12:07:26 -04:00

api.py

PYMOL-5436: Add new command 'protonate' for chemically-aware protonation

2026-03-10 22:27:49 -04:00

callback.py

cleanup: trailing whitespace in Python files

2019-05-09 14:39:36 +02:00

cgo.py

PYMOL-4021-23 Tessellation Shader & Bezier CGO

2024-01-30 15:16:24 -05:00

cgobuilder.py

PYMOL-4021-23 Tessellation Shader & Bezier CGO

2024-01-30 15:16:24 -05:00

checking.py

Eliminate raise_exceptions setting

2020-07-03 15:30:01 +02:00

cmd.py

Add new_command and improved type inference (#470 )

2025-11-28 12:42:41 -05:00

colorprinting.py

Remove __future__ imports (PYMOL-3410)

2020-06-05 09:13:07 +02:00

colorramping.py

Specify color ramp for volume state

2023-07-20 12:07:03 -04:00

commanding.py

Add new_command and improved type inference (#470 )

2025-11-28 12:42:41 -05:00

completing.py

PYMOL-5418: Add USAlign implementation for structural alignment

2026-03-01 00:10:16 -05:00

computing.py

PYMOL-3446 Remove FreeMOL dependency

2020-06-05 09:13:07 +02:00

constants_palette.py

cleanup: trailing whitespace in Python files

2019-05-09 14:39:36 +02:00

constants.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

controlling.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

creating.py

Port properties feature from incentive

2026-02-20 16:46:25 -05:00

diagnosing.py

Basic Qt6 support

2024-08-16 17:40:22 -04:00

editing.py

PYMOL-5436: Add new command 'protonate' for chemically-aware protonation

2026-03-10 22:27:49 -04:00

editor.py

Empty chain selections should be quoted

2026-03-25 03:13:49 -04:00

experimenting.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

exporting.py

PYMOL-5361: export BCIF implementation

2025-11-25 14:56:27 -05:00

externing.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

feedingback.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

fitting.py

PYMOL-5418: Add USAlign implementation for structural alignment

2026-03-01 00:10:16 -05:00

gui.py

autopep8 E711 - Fix comparison with None

2019-05-09 14:49:37 +02:00

headering.py

Remove __future__ imports (PYMOL-3410)

2020-06-05 09:13:07 +02:00

helping.py

Refactor API: _self keyword-only

2020-10-16 11:08:23 +02:00

importing.py

Port properties feature from incentive

2026-02-20 16:46:25 -05:00

internal.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

invocation.py

Use XDG_CONFIG_HOME for pymolrc (#235 )

2022-06-06 06:22:03 -04:00

keyboard.py

PYMOL-3590 Keyboard Shortcut Menu

2021-04-28 04:35:38 -04:00

keywords.py

PYMOL-5436: Add new command 'protonate' for chemically-aware protonation

2026-03-10 22:27:49 -04:00

lazyio.py

collada load stub

2020-07-03 15:32:35 +02:00

locking.py

PYMOL-3410 Remove Python 2 support

2020-06-05 09:13:06 +02:00

menu.py

View/color salt-bridge interactions differently from hydrogen bonds (PYMOL-3846)

2024-01-30 12:57:54 -05:00

monitoring.py

cleanup some thread locking logic

2019-08-13 15:29:32 +02:00

morphing.py

Python 3 compatibility

2015-12-09 17:01:32 +00:00

movie.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

moving.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

mpeg_encode.py

PYMOL-3446 Remove FreeMOL dependency

2020-06-05 09:13:07 +02:00

parser.py

Test if shortcut is callable

2025-02-02 13:08:39 -05:00

parsing.py

PYMOL-3684 Allow parsing of decorated functions

2021-07-07 12:09:40 -04:00

povray.py

cleanup: trailing whitespace in Python files

2019-05-09 14:39:36 +02:00

preset.py

Preset fixes (PYMOL-3614 part 1)

2021-03-26 13:45:30 +01:00

properties.py

Port properties feature from incentive

2026-02-20 16:46:25 -05:00

pymolhttpd.py

Fix ci pipeline for python3.9 and python3.13 (#435 )

2025-04-05 12:47:18 -04:00

querying.py

Port properties feature from incentive

2026-02-20 16:46:25 -05:00

rpc.py

Remove __future__ imports (PYMOL-3410)

2020-06-05 09:13:07 +02:00

save_shortcut.py

PYMOL-3590 Keyboard Shortcut Menu

2021-04-28 04:35:38 -04:00

selecting.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

selector.py

fetch cif by default, ignore_case stuff, ...

2015-06-10 18:48:25 +00:00

seqalign.py

Eliminate two Biopython deprecation warnings (#458 )

2025-05-31 18:37:36 -04:00

setting.py

removing the usage of has_key method of the Shortcut class (#426 )

2025-01-28 08:17:25 -05:00

shortcut_dict.py

PYMOL-3590 Shortcut menu Create/Confirm fixes

2021-04-28 05:19:12 -04:00

shortcut_manager.py

PYMOL-3590 Shortcut manual reset detection

2021-04-28 05:23:31 -04:00

shortcut.py

Dedent exception in autoerr

2026-02-24 01:52:17 -05:00

util.py

get_sasa_relative: Add subsele argument

2021-11-10 02:22:41 -05:00

vfont.py

cleanup: trailing whitespace in Python files

2019-05-09 14:39:36 +02:00

viewing.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

wizarding.py

refactoring shortcut.py script (#391 )

2025-01-24 23:34:53 -05:00

xray.py

Remove __future__ imports (PYMOL-3410)

2020-06-05 09:13:07 +02:00

xwin.py

cleanup: trailing whitespace in Python files

2019-05-09 14:39:36 +02:00