pymol-open-source/data/setting_help.csv

1	active_selections	controls whether or not PyMOL relies upon the concept of an active selection.	boolean	on	0
2	alignment_as_cylinders	If true, distance measure dashes are drawn as high-quality cylinders instead of lines.	boolean	off	0
3	all_states	controls whether or not all molecular states are visible.	boolean	off	1
4	ambient	(float 0.0-1.0, default: 0.14) controls the ambient lighting level.			0
5	ambient_occlusion_mode	Controls which method is used to draw ambient occlusion. 0=disabled, 1=atom-based occlusion, 2=triangle-based occlusion	integer	0	2
6	ambient_occlusion_scale	The scale by which ambient occlusion values are modified. The larger this value the more hinting is applied.	float	25.0	2
7	ambient_occlusion_smooth	Controls whether or not ambient occlusion uses smoothing of nearby values.	int	10	2
8	anaglyph_mode	implements the following 4 anaglyph modes (see also [[setting:anaglyph_mode|Anaglyph stereo mode settings]]) 0 = true anaglyph 1 = gray 2 = color 3 = half-color 4 = optimized (default)	integer	4	0
9	angle_color	Controls the coloring of angle measures.	color	default	2
10	angle_label_position	(float: >0.0, default: 0.5) controls where the angle label is drawn.			2
11	angle_size	(float: >0.0, default: 0.6666) controls how far out the angle indicator is drawn.			2
12	animation	controls whether or not the camera is smoothly interpolated between views.	boolean	on	0
13	animation_duration	controls the default duration of animation for changes in view (note: [[setting:scene|scene_animation_duration]] controls the timing of scene transitions.	float	0.75	0
14	antialias	(integer 0-4, default: 1) general settings for controlling antialiasing. 0 = no antialiasing 1 = adaptive antialiasing 2 = 2-times uniform oversampling plus adaptive antialiasing 3 = 3-times uniform oversampling plus adaptive antialiasing 4 = 4-times uniform oversampling plus adaptive antialiasing			0
15	assembly	For loading mmCIF files: Read assembly (biological unit) instead of asymmetric unit	string	''	0
16	async_builds	controls whether or not geometry builds should be performed in parallel on multithreaded machines. WARNING: This setting can create instability and should be used with caution.	boolean	off	1
17	ati_bugs	Controls whether or not PyMOL adapts its rendering to avoid known ATI bugs.	yes	false	0
18	atom_name_wildcard	controls the wildcard character used when matching atom names. If this string is empty, then the normal wildcard setting will be used. The practical purpose of this setting is to disable use of asterisks as an atom name wildcard when PDB structures are loaded with asterisks in atom names.	string	''	1
19	atom_type_format	Sets the label format for label types. Supported options are: mol2, sybyl, macromodel, mmd, sdf. mol2 sybyl (synonym for mol2) macromodel mmd (synonym for macromodel) sdf (default)	string	mol2	0
20	auto_classify_atoms	controls whether or not PyMOL spends extra CPU cycles classifying atoms as polymer, organic, solvent, or inorganic as well as locating per-residue guide atoms.	boolean	on	0
21	auto_color	controls whether or not new objects are given a different color for their carbon atoms.	boolean	on	0
22	auto_copy_images	controls whether or not PyMOL automatically copies images from the OpenGL viewport into the system's clipboard.	boolean	on	0
23	auto_defer_atom_count	Structures with fewer than ''auto_defer_atom_count'' atoms are automatically labeled upon loading. Set to 0 to auto label none.	integer	0	0
24	auto_defer_builds	Multistate models with fewer than ''auto_defer_builds'' number of states will automatically be preprocessed for geometry and rendering. Set to -1 to process all states regardless of count.	integer	500	0
25	auto_dss	controls whether or not secondary structure is automatically computed for structure which lack such definitions.	boolean	on	0
26	auto_hide_selections	controls whether or not PyMOL automatically disables selections when new objects or selections are created.	boolean	on	0
27	auto_overlay	controls whether or not overlay text is automatically shown/hidden in response to user actions.	boolean	off	0
28	auto_remove_hydrogens	controls whether or not hydrogens are automatically removed when building.	boolean	off	0
29	auto_rename_duplicate_objects	if on, PyMOL will rename new objects that have the same name as an existing object; if off, PyMOL will overwrite the existing object.	boolean	off	0
30	auto_sculpt	controls whether or not sculpting is automatically activated when an atom is moved.	boolean	off	0
31	auto_show_lines	controls whether or not the lines representation is automatically shown for new objects.	boolean	on	0
32	auto_show_nonbonded	control whether or not the nonbonded representation is automatically shown for new objects.	boolean	on	0
33	auto_show_selections	controls whether or not PyMOL automatically enables each new selection.	boolean	on	0
34	auto_show_spheres	controls whether or not the sphere representation is automatically shown for new objects.	boolean	off	0
35	auto_zoom	controls automatic zooming behavior: 0 = no zoom 1 = zoom new objects 2 = zoom always 3 = zoom current state always 4 = zoom all objects 5 = zoom first object only	integer	-1	0
36	autoclose_dialogs	Unused setting.	boolean	on	0
37	axis	- The cmd can be one of: 'x', 'y', or 'z'.			0
38	backface_cull	controls whether or not the raytracer renders backfacing triangles.	boolean	on	0
39	batch_prefix	contains a prefix to be used for temporary files.	string	tmp_pymol	0
40	bg_gradient	Controls whether or not the background is gradient colored. If yes, then bg_rgb_top and bg_rgb_bottom will be used to set the colors.	boolean	off	0
41	bg_image_filename	if set controls the image used in the background.	string	''	0
42	bg_image_linear	controls the sampling of the texture for the background image. If off, then the nearest pixel is set, otherwise, a linear interpolation is used.	boolean	on	0
43	bg_image_mode	Determines how the background image is drawn. 0 - stretched, 1 - centered, 2 - tiled, 3 - centered and repeated	integer	0	0
44	bg_image_tilesize	This setting is used when bg_image_mode=3 and defines the size of each tile (in x and y, z is not used).	vector	[100.0, 100.0, 0.0]	0
45	bg_rgb	controls the background rgb color.	vector	[0.0,0.0,0.0]	0
46	bg_rgb_bottom	Controls bottom color when bg_gradient is set.	color	[0.2,0.2,0.5]	0
47	bg_rgb_top	Controls top color when bg_grdient is set.	color	[0.0,0.0,0.3]	0
48	button_mode	reports the current button mode index (internal).	integer	0	0
49	button_mode_name	reports the current button mode name.	string	3-Button Viewing	0
50	cache_display	controls whether or not a copy is made of the current display in order to speed updates of menus, etc.	boolean	depends	0
51	cache_max	controls how many primitive data elements can be retained in the geometry cache (before old/unused entries are expired).	integer	1250000	0
52	cache_memory	special case, currently unsupported setting.	boolean	off	0
53	cache_mode	(integer: 0-2, default 0) controls whether or not PyMOL retains precomputed geometries (such as molecular surfaces) inside the session file. 0: off 1: read only 2: retain all new surfaces computed			2
54	cartoon_color	(color, default:-1) controls the color of the cartoon representation.			3
55	cartoon_cylindrical_helices	controls whether helices are displayed as cylinders or as a residue-based cartoon.	boolean	off	2
56	cartoon_debug	(integer: 0-3, default: 0) is for development.			2
57	cartoon_discrete_colors	affects whether per-residue colors change at or halfway inbetween the C-alpha position.	boolean	off	2
58	cartoon_dumbbell_length	is a parameter for the dumbbell cross-section.	float	1.6	2
59	cartoon_dumbbell_radius	is a parameter for the dumbbell cross-section.	float	0.16	2
60	cartoon_dumbbell_width	is a parameter for the dumbbell cross-section.	float	0.17	2
61	cartoon_fancy_helices	controls whether dumbbell or oval cross-section is used.	boolean	off	2
62	cartoon_fancy_sheets	controls whether or not beta-sheet strands have arrows.	boolean	off	2
63	cartoon_flat_sheets	controls whether or not beta-sheet strands are flattened.	boolean	on	2
64	cartoon_gap_cutoff	cutoff for drawing a dashed cartoon loop across gaps. E.g. if one residue is missing, the cutoff needs to be >=2 (or for 5 missing residues, >= 6, etc.).	integer	0	2
65	cartoon_helix_radius	controls the radius of the cylindrical helix representation.	float	2.25	2
66	cartoon_highlight_color	controls the accent color.	color	-1	2
67	cartoon_ladder_color	controls the color of the ladder representation.	color	-1	2
68	cartoon_ladder_mode	controls how the ladder is drawn.	integer	1	2
69	cartoon_ladder_radius	controls the radius of the ladder representation.	float	0.25	2
70	cartoon_loop_cap	(integer: 0-2, default: 1) controls how loop segments are capped: 0 = not capped 1 = round cap 2 = flat cap			2
71	cartoon_loop_quality	controls how many facets are used to draw the loop cross-section.	integer	6	2
72	cartoon_loop_radius	controls the radius of loop segments.	float	0.2	2
73	cartoon_nucleic_acid_as_cylinders	controls whether or not PyMOL draws cartoon nucleic acids as high-quality cylinders or low-quality.	boolean	on	0
74	cartoon_nucleic_acid_color	controls the control of nucleic acid backbone cartoons.	color	-1	2
75	cartoon_nucleic_acid_mode	controls how the nucleic acid backbone is computed: 0 = use P coordinates 1 = use C1* coordinates 2 = use P coordinates and terminal 3' OH (if present) 3 = use P coordinates and terminal 5' OH (if present) 4 = use P coordinates and both terminal 3' and 5' OHs (if present)	integer	4	2
76	cartoon_oval_length	is the length of the oval cross-section.	float	1.35	2
77	cartoon_oval_quality	controls how many facets are used to draw the oval cross-section.	integer	10	2
78	cartoon_oval_width	is the width of the oval cross section.	float	0.25	2
79	cartoon_power	affects cartoon shape.	float	2.0	2
80	cartoon_power_b	affects cartoon shape.	float	0.5	2
81	cartoon_putty_quality	controls how many facets are used.	float	11	2
82	cartoon_putty_radius	is the default putty size.	float	0.4	2
83	cartoon_putty_range	is a putty scaling parameter.	float	2.0	2
84	cartoon_putty_scale_max	is a putty scaling parameter.	float	4.0	2
85	cartoon_putty_scale_min	is a putty scaling parameter.	float	0.6	2
86	cartoon_putty_scale_power	is a putty scaling parameter.	float	1.5	2
87	cartoon_putty_transform	0 is normalized nonlinear scaling; 1 is relative nonlinear scaling; 2 is scaled nonlinear scaling; 3 is absolute nonlinear scaling; 4 is normalized linear scaling; 5 is relative linear scaling; 6 is scaled linear scaling; 7 is absolute linear scaling from the B factor; and, 8 is implied RMS scaling.	integer	0	2
88	cartoon_rect_length	is the length of the rectangle cross-section.	float	1.4	2
89	cartoon_rect_width	is the width of the rectangle cross-section.	float	0.4	2
90	cartoon_refine	controls how much refinement is done of intermediate cartoon coordinates.	integer	5	2
91	cartoon_refine_normals	controls whether or not normals are refined (-1 = automatic).	integer	-1	2
92	cartoon_refine_tips	controls how much the tips of beta-strands are refined (straightened).	integer	10	2
93	cartoon_ring_color	controls the color of ring representation.	color	-1	2
94	cartoon_ring_mode	controls how rings are shown: 0 = no ring (use ladders for bases, if applicable) 1 = round-edge rings 2 = square-edge rings 3 = rings with edges 4 = show ring as a sphere of approximate size 5 = show ring centers as small spheres	integer	0	2
95	cartoon_ring_radius	controls the radius of the sphere used to represent rings (-1.0 means compute from ring geometry).	float	-1	2
96	cartoon_ring_transparency	controls the transparency level of rings. When negative, this setting is controlled by cartoon_transparency.	float	-1.0	2
97	cartoon_ring_width	controls the thickness of the ring representation.	float	0.125	2
98	cartoon_round_helices	controls whether or not PyMOL makes helices round by forcing orientation vectors to point along the helix axes.	boolean	on	2
99	cartoon_sampling	controls how many facets are used to draw cartoon segments.	integer	7	2
100	cartoon_side_chain_helper	controls whether or not PyMOL will hide backbone lines and sticks when the cartoon representation is visible as well as disabling smoothing for C-alpha coordinates for residues whose side chains are shown.	boolean	off	3
101	cartoon_smooth_cycles	controls how many smoothing cycles are applied to the overall cartoon.	integer	2	2
102	cartoon_smooth_first	(integer, default: 1) controls the start point for smoothing each segment.			2
103	cartoon_smooth_last	controls the stop point for smoothing of each segment.	integer	1	2
104	cartoon_smooth_loops	controls whether or not loop segments are smoothed. Note that this setting modifies the apparent coordinates of the loop in order to achieve improved aesthetics.	boolean	off	2
105	cartoon_throw	affects cartoon geometry.	float	1.35	2
106	cartoon_trace_atoms	controls whether cartoons are traced through all atoms. Note that this setting only works well for the loop and tube representations.	boolean	off	2
107	cartoon_transparency	controls the transparency of cartoon representations.	float	0.0	2
108	cartoon_tube_cap	controls the type of cap applied to the tube, and accepts the same values as cartoon_loop_cap.	integer	2	2
109	cartoon_tube_quality	controls how many facets are used in the tube cross-section.	integer	9	2
110	cartoon_tube_radius	controls the radius of tube segments.	float	0.5	2
111	cartoon_use_shader	If true, on screen rendering of cartoons uses the OpenGL shader language (GLSL) to render cartoon. If false, OpenGL v1.x style rendering is used.	boolean	on	0
112	cavity_cull	is the threshold below which isolated clusters of points will be excluded from the surface representation. These are generally interior pockets inside of proteins.	integer	10	2
113	cgo_debug	Controls whether or not PyMOL shows debugging graphics related to CGO objects.	int	0	0
114	cgo_dot_radius	if greater than zero, controls the default radius for cgo dots when ray tracing. Otherwise, the radius is computed from cgo_dot_width.	float	-1.0	2
115	cgo_dot_width	controls the width of cgo dots.	float	1.0	2
116	cgo_ellipsoid_quality	Controls cgo-based representation quality of ellipsoids.	integer	-1	0
117	cgo_lighting	controls whether or not PyMOL lights CGOs.	boolean	1	1
118	cgo_line_radius	if greater than zero, controls the default radius for lines when ray tracing. Otherwise, the radius is computed from cgo_line_width;	float	-1.0	2
119	cgo_line_width	is the default line width for cgo geometries.	float	1.0	2
120	cgo_shader_ub_color	controls the data size of color data sent to the graphics card. If enabled, unsigned bytes are sent which may be faster and smaller.	boolean	0	0
121	cgo_shader_ub_flags	controls whether or not unsigned bytes are used in sending data to the graphics card.	boolean	0	0
122	cgo_shader_ub_normal	controls the data size of normals sent to the graphics card. If enabled, unsigned bytes are sent which may be faster and smaller.	boolean	0	0
123	cgo_sphere_quality	controls the sphere quality to use when loading CGO representations.	integer	1	0
124	cgo_transparency	controls the default transparency of cgo geometries.	float	0.0	2
125	cgo_use_shader	If true, on screen rendering of CGOs uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
126	cif_keepinmemory	Experimental feature. Retain parsed CIF file in memory, for pymol.querying.cif_get_array	boolean	off	0
127	cif_use_auth	When loading mmCIF files, use 'auth_*' identifiers (if present, fallback to 'label_*' identifiers). Note that 'label_asym_id' is always loaded as the 'segi' identifier (if present).	boolean	on	0
128	clamp_colors	controls whether or not colors are clamped to the current color table.	boolean	on	0
129	clean_eletro_mode	controls whether or not electrostatics are taken into account when cleaning.	integer	0	0
130	cmd	- The cmd cant be stop(0), play(1), or toggle(-1).			0
131	cone_quality	controls the number of segments used to draw CGO cones.	integer	18	0
132	connect_bonded	controls whether or not bonds can be detected between atoms with explicit bonds in the PDB file.	boolean	off	0
133	connect_cutoff	affects how close atoms need to be in order for bonds to be created.	float	0.4	0
134	connect_mode	controls how bonds are detected when PDB files are loaded. 0 = auto-connect and use explicit valences 1 = use explicit valences only 2 = reserved	integer	0	0
135	coulomb_cutoff	is the cutoff for coulombic calculations.	float	10.0	0
136	coulomb_dielectric	is the dielectric for coulombic calculations.	float	2.0	0
137	coulomb_units_factor	is the conversion factor to give output units (kT/e).	float	557.0	0
138	cromadepth	color by depth, gives stereo effect with ChromaDepth glasses (shader rendering only)	boolean	off	0
139	cull_spheres	No longer used, previously used for performance.	integer	-1	2
140	cylinder_shader_ff_workaround	If true, then the workaround that corrects improper rendering on some Intel and NVidia cards is enabled. Some hardware allow correct rendering when this is disabled, and in that case rendering speed is generally improved.	boolean	on	0
141	cylinders_shader_filter_faces	If true, then the workaround that corrects improper rendering on some Intel and NVidia cards is enabled. Some hardware allow correct rendering when this is disabled, and in that case rendering speed is generally improved.	boolean	on	0
142	dash_as_cylinders	If true, distance measure dashes are drawn as high-quality cylinders instead of lines.	bool	on	0
143	dash_color	Controls the color of dashes used to represent distance measures.	color	-1	2
144	dash_gap	controls the length of the visible dash.	float	0.35	2
145	dash_length	controls the separation between dashes.	float	0.15	2
146	dash_radius	if greater than zero, controls the radius of the dash when ray tracing. Otherwise, the radius is computed from dash_width.	float	0.0	2
147	dash_round_ends	controls whether or not dashes are rounded on their ends.	boolean	on	2
148	dash_use_shader	If true, on screen rendering of dashes uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
149	dash_width	controls the width of the lines used to draw dashes.	float	3.0	2
150	debug_pick	a setting for debugging mouse pick problems.	integer	0	0
151	default_2fofc_map_rep	This controls the default map representation when a 2FoFc map is loaded from an MTZ map.	string	volume	0
152	default_buster_names	This is the list of valid column names to be sought when autoloading Buster maps.	string	2FOFCWT PH2FOFCWT FOFCWT PHFOFCWT	0
153	default_fofc_map_rep	This controls the default map representation when a FoFc map is loaded from an MTZ map.	string	volume	0
154	default_phenix_names	This is the list of valid column names to be sought when autoloading Phenix maps.	string	2FOFCWT PH2FOFCWT FOFCWT PHFOFCWT	0
155	default_phenix_no_fill_names	This is the list of valid column names to be sought when autoloading Phenix (no fill) maps.	string	2FOFCWT_no_fil PH2FOFCWT_no_fill None None	0
156	default_refmac_names	This is the list of valid column names to be sought when autoloading Refmac maps.	string	FWT PHWT DELFWT PHDELWT	0
157	defer_builds_mode	controls when the underlying geometry for molecular representations is generated, as follows: 0: visible geometry for all states of all enabled objects is generated upfront and retained in memory for reuse (highest memory usage). 1: visible geometry for the current states of all enabled objects is generated only when needed and then retained in memory for later reuse. 2: visible geometry for the current state of all enabled objects is generated only when needed and retained for the current state, even in disabled objects. 3: visible geometry for the current state of all enabled objects is generated only when needs and retained for reuse in enabled objects only while in the current state (lowest memory usage).	integer	0	2
158	depth_cue	controls whether or not a depth cue fog effect is used.	boolean	on	0
159	dihedral_color	controls dihedral measurement colors.	color	default	2
160	dihedral_label_position	(float: >0.0, default: 1.2) controls where the dihedral label is drawn.			2
161	dihedral_size	(float: >0.0, default: 0.6666) controls how far out the dihedral indicator is drawn.			2
162	direct	(float 0.0-1.0, default: 0.45) is the amount of light being emitted from the camera.			0
163	dist_counter	is the counter used when auto-generating measurement object names.	integer	0	0
164	distance_exclusion	controls the cutoff of bonds that two atoms must exceed if a distance is to be drawn between them when mode=3 is used as an option to the distance command.	integer	5	0
165	dot_as_sphere	If true, on screen rendering of dots uses the spheres representation, not dots to draw the dots.	boolean	on	0
166	dot_color	(color, default -1) controls the color of the dot representation. By default, dots assume the color of the associated atom.			3
167	dot_density	controls the density of dots taken from the surface of a sphere.	integer	2	2
168	dot_hydrogens	controls whether or not dots are drawn on hydrogen atoms.	boolean	on	2
169	dot_lighting	controls whether or not dots are lit based on their associated surface normals. The setting has no effect when ray tracing.	boolean	on	2
170	dot_normals	controls whether or not dots are drawn with normals. This achieves essentially the same effect as dot_lighting, and it too has no effect when ray tracing.	boolean	on	2
171	dot_radius	if greater than zero, controls the radius of dots. Otherwise, the dot radius is computed from dot_width based on the pixel size of the current viewport.	float	0.0	2
172	dot_solvent	controls whether we generate dots for the atomic or solvent accessible surface.	boolean	off	2
173	dot_use_shader	If true, on screen rendering of dots uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
174	dot_width	controls the dot width in viewport pixels.	float	2.0	2
175	draw_mode	0 is the normal OpenGL renderer; 1 is antialised OpenGL; 2 is ray traced without shadows; 3 is ray traced with shadows.	integer	0	0
176	dynamic_measures	controls whether or not PyMOL updates measurement objects when incorporated atoms are moved.	boolean	1	1
177	dynamic_width	controls whether or not PyMOL draws lines thicker for easier viewing.	boolean	on	0
178	dynamic_width_factor	controls the dynamic width scaling.	float	0.06	0
179	dynamic_width_max	controls the dynamic width scaling.	float	2.5	0
180	dynamic_width_min	controls the dynamic width scaling.	float	0.75	0
181	edit_bond_cycle_mode	(integer, default: 1): controls the order in which PyMOL cycles bonds: 0 is single, double, triple; 1 is single, aromatic, double, triple, and 2 is single, double, triple, aromatic.			0
182	edit_light	(integer 1-8, default: 1) This setting controls which light may be moved by the mouse.			0
183	editor_auto_dihedral	controls whether or not the dihedral value is automatically shown when modifying a dihedral torsion.	boolean	on	0
184	editor_auto_origin	controls whether or not the origin is automatically set when rotating molecules.	boolean	on	0
185	editor_label_fragments	not currently functional.	boolean	off	0
186	ellipsoid_color	Controls ellipsoid coloring. Possible values are any PyMOL color.	color	default	3
187	ellipsoid_probability	Probability value around which to draw the ellipsoids.	float	0.5	2
188	ellipsoid_quality	Controls ellipsoid quality.	integer	1	0
189	ellipsoid_scale	Multiplicative scale factors that controls ellipsoid size scaling.	float	1.	3
190	ellipsoid_transparency	Controls ellipsoid transparency; 0=opaque, 1=transparent.	float	0	3
191	fast_idle	affects idling behavior and should not normally need to be modified.	float	20,000	0
192	fetch_host	Controls the server from which PDB are fetched. Specify the European PDB server with 'pdbe' and the Japanese PDB server with 'pdbj'. This setting defaults to the US server.	string	pdb; valid values: pdb, pdbe, pdbj	0
193	fetch_path	is the default location for files obtained via the fetch command.	string	.	0
194	field_of_view	(float: 1-179:, default: 20.0) determines the vertical field of view for the window, in degrees.			0
195	fit_iterations	is the maximum number of iterations for fitting.	integer	1000	0
196	fit_kabsch	Controls whether the published Kabsch method is used to fit or a faster proprietary method is used.	int	0	0
197	fit_tolerance	is the maximum residual for fitting.	float	0.00001	0
198	float_labels	controls whether or not labels are drawn last without Z-buffer clipping so that they appear to float over the image. This setting has no effect when ray tracing.	boolean	off	2
199	fog	(float 0-1.0, default: 1.0) controls the fog density.			0
200	fog_start	(float 0-1.0, default: 0.45) controls where fog starts.			0
201	frame	stores the value of the current movie frame.	integer	1	0
202	full_screen	returns whether or not PyMOL is in full screen mode. You must use [[command:full_screen]] to change this setting.	boolean	off	0
203	gamma	controls the gamma level applied to each pixel.	float	1.0	0
204	gaussian_b_adjust	is an adjustment made to the temperature factors before computing the gaussian maps.	float	0.0	0
205	gaussian_b_floor	is the minimum temperature factor that for computing gaussian maps.	float	0.0	0
206	gaussian_resolution	is the default resolution for computing gaussian maps.	float	2.0	0
207	geometry_export_mode	An undocumented setting that might have somthing to do with OBJ, VRML, and other 3D output formats.	integer	0	0
208	gradient_max_length	(float, default: 100)			2
209	gradient_min_length	(float, default: 2.0)			2
210	gradient_min_slope	(float, default: 0.00001)			2
211	gradient_normal_min_dot	(float, default: 0.70)			2
212	gradient_spacing	(int, default: 3)			2
213	gradient_step_size	(float, default: 0.25)			2
214	gradient_symmetry	(float, default: 0.0)			2
215	grid_max	Controls the maximum number of grid slots.	int	-1	0
216	grid_mode	This setting enables or disables grid mode, where each object or state can be drawn in its own subwindow.	int	0	0
217	grid_slot	Controls in which grid window an object will be drawn.	int	-1	1
218	group_auto_mode	(int 0-2, default: 1) Treats dots in object names as group prefix delimiter. 0: off, 1: put in existing groups, 2: create groups if they do not exist			0
219	group_full_member_names	With group_auto_mode, either show full object names in object panel, or strip group name prefix from object name.	bool	off	0
220	h_bond_cone	is a hydrogen-bond geometry parameter.	float	180.0	0
221	h_bond_cutoff_center	is the maximum distance for ideal hydrogen bonds.	float	3.6	0
222	h_bond_cutoff_edge	is the maximum distance for a marginal hydrogen bond.	float	3.6	0
223	h_bond_exclusion	controls suppression of hydrogen bonds around adjacent atoms.	integer	3	0
224	h_bond_from_proton	determines if PyMOL draws the hydrogen bonds from the heavy atom or the hydrogen.	boolean	on	0
225	h_bond_max_angle	is the maximum angle for a marginal hydrogen bond.	float	63.0	0
226	h_bond_power_a	is a hydrogen-bond geometry parameter.	float	1.6	0
227	h_bond_power_b	is a hydrogen-bond geometry parameter.	float	5.0	0
228	halogen_bond_distance	Halogen-bonds maximum distance.	float	3.5	0
229	halogen_bond_as_donor_min_donor_angle	Halogen-bonds as donor minumum donor angle.	float	140.0	0
230	halogen_bond_as_donor_min_acceptor_angle	Halogen-bonds as donor minumum acceptor angle.	float	90.0	0
231	halogen_bond_as_acceptor_min_donor_angle	Halogen-bonds as acceptor minumum donor angle.	float	120.0	0
232	halogen_bond_as_acceptor_min_acceptor_angle	Halogen-bonds as acceptor minumum acceptor angle.	float	90.0	0
233	halogen_bond_as_acceptor_max_acceptor_angle	Halogen-bonds as acceptor maximum acceptor angle.	float	170.0	0
234	salt_bridge_distance	Salt-bridge maximum distance.	float	5.0	0
235	half_bonds	controls whether or not half-bonds are shown when only one of the two atoms is visible.	boolean	off	2
236	hash_max	controls the maximum amount of memory used by the various temporary 3D hash tables used in geometry generation and raytracing.	integer	depends	0
237	heavy_neighbor_cutoff	cutoff for finding heavy neighbors in measurements wizard.	float	3.5	0
238	hide_long_bonds	controls whether or not PyMOL hides bonds longer than 90% of the sum the vdw radii.	boolean	off	2
239	hide_underscore_names	controls whether or not names with leading underscores are hidden from the user.	boolean	on	0
240	idle_delay	affects idling behavior and should not normally need to be modified.	float	1.5	0
241	ignore_case	controls whether or not the selection language is case sensitive or not (excludes chain and segi, see ignore_case_chain).	boolean	on	0
242	ignore_case_chain	controls whether or not the selection language is case sensitive for chain and segi.	boolean	off	0
243	ignore_pdb_segi	controls whether or not the PDB segment identifier is ignored.	boolean	off	0
244	image_dots_per_inch	if non-zero, controls the dots-per-inch in the output file.	float	0.0	0
245	internal_feedback	controls the number of lines of output shown in the viewer window.	integer	1	0
246	internal_gui	controls whether or not the internal graphical user interface (internal gui) is shown in the viewer window.	boolean	on	1
247	internal_gui_control_size	controls the height of controls in the internal gui.	integer	18	0
248	internal_gui_mode	function unknown.	integer	0	0
249	internal_gui_name_color_mode	controls the text color of object names: 0=default (white), 1=first carbon atom color, 2=object color	integer	0	0
250	internal_gui_width	controls the width of the internal gui in pixels.	integer	220	0
251	internal_prompt	controls whether or not the user is presented with a prompt in the viewer window or merely an output log.	boolean	on	0
252	keep_alive	when running without a GUI, don’t quit after the input is exhausted	boolean	false	0
253	label_anchor	(string, default: CA) Atom name to which default labels are attached. For example, CA=alpha carbon and CB=beta carbon.			0
254	label_angle_digits	(integer, default: -1) controls the number of decimal places shown on angle labels. If default use value from label_digits setting.			2
255	label_bg_color	controls the color of label's background. By default, the background is not shown, but once this value is set to a value other than -1/default, the background is shown.	color	-1	4
256	label_bg_outline	controls whether or not the label's background outline is drawn. If set, the outline is drawn in the same color as label_connector_color.	boolean	off	4
257	label_bg_transparency	controls the transparency of the label's background.	float	.6	4
258	label_color	(color, default: -6 (front)) controls the text color of labels. By default, labels assume the front color, which is a color that has sharp contrast to the background. (i.e., white if the background is black)			3
259	label_connector	controls whether or not the connector between the label and its target atom is drawn.	boolean	off	4
260	label_connector_color	controls the color of label connector. By default, label connectors behave the same way as labels and assume the front color, which is a color that has sharp contrast to the background. (i.e., white if the background is black)	color	-6	4
261	label_connector_ext_length	controls the distance away from the label in which the two lines meet in label_connector_mode 2 and 4. This value is multiplied by the label_size.	float	2.5	4
262	label_connector_mode	controls how the connector is drawn from the label to its target atom. 0 - line from target to closest corner or midpoint of label's outline bounding box 1 - line from target to center of label (stops at bounding box) 2 - two lines drawn from target to lower corner of label (with bend at label_connector_ext_length distance from label) 3 - line from target to closest corner or edge of label 4 - same as mode #2, except that if the target is in-between the label in either dimension, a line is drawn directly perpendicular to the label	integer	0	4
263	label_connector_width	controls the width of the connector and background outline lines.	float	2.0	4
264	label_digits	(integer, default: 1) controls the number of decimal places shown on labels.			2
265	label_dihedral_digits	(integer, default: -1) controls the number of decimal places shown on dihedral labels. If default use value from label_digits setting.			2
266	label_distance_digits	(integer, default: -1) controls the number of decimal places shown on distance labels. If default use value from label_digits setting.			2
267	label_font_id	(integer: 1-15, default: 5) controls what font is used to draw labels. label fonts 1-4: are non-scalable raster fonts label fonts 5-15: are scalable vector fonts. Font 15 includes greek characters accessible via unicode.			2
268	label_multiline_justification	For labels with multiple lines, this justification value controls the horizontal justification. This value is a floating point value, so it can be interpolated between the values below. 1 = left justification 0 = center justification -1 = right justification	float	1.	4
269	label_multiline_spacing	controls the space between multiline labels (value is in label_size scale, e.g., 1.2 there is .2 label_size between the lines)	float	1.2	4
270	label_outline_color	(color, default -1) controls whether or not an outline of the indicated color is drawn around each character in order to improve contrast and readability. This setting only applies to scalable fonts.			2
271	label_padding	controls the space between the bounds of the text and the background outline in the X and Y direction. (values are in label_size scale), 3rd value in the vector is currently not used.	vector	[0.2, 0.2, 0.0]	4
272	label_placement_offset	controls the position of labels in camera X, Y, and Z. This value is changed at the atom-state level when the labels are dragged with the mouse. This setting behaves similar to the label_position setting without the alignment functionality.	vector	[0.0, 0.0, 0.0]	4
273	label_position	controls the position and alignment of labels in camera X, Y, and Z. Values between -1.0 and 1.0 affect alignment only, with the label attached to the atom position. Values beyond that range represent coordinate displacements. For the z dimension, values from -1 to 1 do not mean anything. Values above 1 and below -1 are offsets (minus 1 of the absolute value) in world coordinates. For example, the default 1.75 is .75 angstroms closer to the viewer.	vector	[0.0, 0.0, 1.75]	4
274	0 = relative to the world
275	1 = relative to the screen (label_screen_point setting values -1 to 1 is the screen range)
276	label_screen_point	specifies screen placement when label_relative_mode is 1 or 2 (see above). If label_z_target is not set, the 3rd value is used for the normalized z value relative to the clipping planes (1. is on the front clipping plane, -1 is on the back clipping plane).	vector	[0.0, 0.0, 0.0]	4
277	label_shadow_mode	controls whether labels cast and/or catch shadows. 0 = labels neither cast nor catch shadows. 1 = labels catch shadows. 2 = labels cast shadows. 3 = labels both cast and catch shadows just like normal geometries.	integer	0	0
278	label_size	controls the approximate size of label text. Negative values specify label size in world coordinates (e.g., -1. will show a label 1 angstrom in height)	float	14.0	2
279	label_z_target	(New in 1.7)			4
280	legacy_mouse_zoom	controls whether or not the zoom axis is flipped.	boolean	off	0
281	legacy_vdw_radii	controls whether or not old VDW radii are used.	boolean	off	0
282	light	is the direction of movable light source 1.	vector	[ -0.4, -0.4, -1.0]	0
283	light2	is the direction of movable light source 2.	vector	[ -0.55, -0.7, 0.15]	0
284	light3	is the direction of movable light source 3.	vector	[ 0.3, -0.6, -0.2]	0
285	light4	is the direction of movable light source 4.	vector	[ -1.2, 0.3, -0.2]	0
286	light5	is the direction of movable light source 5.	vector	[ 0.3, 0.6, -0.75]	0
287	light6	is the direction of movable light source 6.	vector	[ -0.3, 0.5, 0.0]	0
288	light7	is the direction of movable light source 7.	vector	[ 0.9, -0.1, -0.15]	0
289	light8	is the direction of movable light source 8.	vector	[ 1.3, 2.0, 0.8]	0
290	light9	is the direction of movable light source 9.	vector	[ -1.7, -0.5, 1.2]	0
291	light_count	(integer 1-10, default: 2) is the number of light sources including the camera source.			0
292	line_as_cylinders	If true, on screen rendering of lines uses the OpenGL shader language (GLSL) and extruded as thicker cylinders. If false, OpenGL lines are used.	boolean	off	0
293	line_color	controls how PyMOL colors lines.	color	default	2
294	line_radius	controls the line width in Angstroms when lines are rendered via the ray tracer. If this value is equal to 0.0, then the line radius will be calculated based line_width using a pixel size corresponding to the dimensions of the viewer window.	float	0.0	2
295	line_smooth	controls whether or not lines are antialiased.	boolean	on	0
296	line_stick_helper	controls whether or not lines will be automatically hidden when sticks are visible and opaque.	boolean	on	2
297	line_use_shader	If true, on screen rendering of lines uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
298	line_width	controls the line width in pixels for the lines representation.	float	1.4	2
299	log_conformations	controls whether or not conformational chages are logged.	boolean	on	0
300	logging	reports whether or not logging is active.	boolean	off	0
301	map_auto_expan_sym	When map_auto_expand_sym is on, symmetry operations will be applied to expand it beyond the precalculated volume when necessary. Symmetry information is taken from the molecular selection if available, or from the map object, if available.	boolean	on	0
302	matrix_mode	(integer: 0-2, default: 0) affects how objects are transformed and manipulated. 0 = by coordinate 1 = by matrix			2
303	max_threads	controls how many threads are used for raytracing. This setting is auto-configured (when possible).	integer	1	1
304	max_ups	throttles PyMOL to a maximum number of updates per second. When set to 0, PyMOL updates as quickly as possible.	integer	0	0
305	mesh_as_cylinders	If true, on screen rendering of mesh uses the OpenGL shader language (GLSL) and extruded as thicker cylinders. If false, OpenGL lines are used.	boolean	off	0
306	mesh_carve_cutoff	carves all mesh beyond this cutoff from the value in ''mesh_carve_selection''	float	0.0	2
307	mesh_carve_selection	(float, default: 0.0)			2
308	mesh_carve_state	the state from which to carve meshes.	integer	0.0	2
309	mesh_clear_cutoff		float	0.0	2
310	mesh_clear_state	the state from which to carve meshes.	integer	0	2
311	mesh_color	is the color of the mesh representation.	color	-1	3
312	mesh_mode	controls what atoms are considered when generating the mesh: 0 = consider atoms based on their ignore and exfoliate flags. 1 = consider all atoms 2 = condider only non-hydrogen atoms	integer	0	2
313	mesh_negative_color	inside mesh color	color	default	1
314	mesh_negative_visible	controls whether or not the inside of the mesh is shown.	boolean	true	0
315	mesh_quality	is a tuning parameter that should not need to be modified.	integer	2	2
316	mesh_radius	if greater than zero, controls the radius of the mesh representation when ray tracing. Otherwise, the radius is computed from mesh_width.	float	0.0	2
317	mesh_skip	(integer, default: 0)			2
318	mesh_solvent	controls whether the mesh is generated for a solvent accessible surface as opposed to the default molecular surface.	boolean	off	2
319	mesh_type	(integer: 0-1,default: 0) controls what type of mesh is generated: 0 = wire 1 = points			2
320	mesh_use_shader	If true, on screen rendering of mesh uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
321	mesh_width	controls the default width of the mesh.	float	1.0	2
322	min_mesh_spacing	controls the minimum mesh spacing.	float	0.6	2
323	mode	- The mode can be on(true) or off(false) (on by default).			0
324	moe_separate_chains	controls whether or not PyMOL separates chains when reading MOE files.	boolean	-1	0
325	motion_bias	with bias>1, the motion will pause for some frames around the keyframe	float	-1.0	1
326	motion_hand	determins the rotation direction for full 180° turns	int	1	1
327	motion_linear	(float, default: 0.0)			1
328	motion_power	With power<1 the motion will slow down at keyframes, with power=1 it will not change the speed.	float	0.0	1
329	motion_simple	(int, default: 0)			1
330	mouse_grid	show the mouse actions table in the mouse mode panel	bool	on	0
331	mouse_limit	is an internal setting.	float	100.0	0
332	mouse_restart_movie_delay	controls whether or not the movie delay is restarted after any mouse movement.	boolean	off	0
333	mouse_scale	affects the impact of mouse movement on rotation.	float	1.3	0
334	mouse_selection_mode	contols what the mouse is currently selecting: 0 = atoms 1 = residues 2 = chains 3 = segments 4 = objects 5 = molecules	integer	1	0
335	mouse_wheel_scale	clipping slab adjustment step when using the mouse wheel.	float	0.5	0
336	mouse_z_scale	Controls mouse sensitivity along the Z-axis.	float	1.0	0
337	movie_animate_by_frame	If movie is playing and rocking animation is performed, calculate animation progression by frame count and **movie_fps**, otherwise by elapsed time.	bool	off	0
338	movie_auto_interpolate	reinterpolate object and camera motions whenever keyframes are stored.	bool	on	1
339	movie_auto_store	store a keyframe when an object is dragged	bool	on	1
340	movie_delay	controls how long should PyMOL wait before playing the next movie frame.	float	30.0	0
341	movie_fps	Sets the number of frames per second at which movies will be created.	float	30.0	0
342	movie_loop	controls whether PyMOL plays the movie in a continuous loop or just once through.	boolean	on	1
343	movie_panel	Controls whether the movie timeline is shown.	int	1	0
344	movie_panel_row_height	row height in pixels of rows in movie panel	int	15	0
345	movie_quality	Controls the compression step of moviemaking. The higher the value the better the quality but larger the output file.	integer	90	0
346	movie_rock	if 0 or 1 then this will override the **rock** setting during movie play.	int	-1	0
347	multiplex	controls whether or not multi-state objects are loaded into one object or multiple objects.	integer	-1	0
348	name	is the name of the object (required)			0
349	nb_spheres_quality	controls how many triangles are used to render nonbonded spheres without shaders.	int	1	2
350	nb_spheres_size	nonbonded spheres radius	float	0.25	2
351	nb_spheres_use_shader	(int 0-2, default: 1) On screen rendering of nonbonded spheres uses the OpenGL shader language (GLSL), 0 (off), 1 (default shader), or 2 (sphere shader)			0
352	neighbor_cutoff	cutoff for finding neighbors in measurements wizard.	float	3.5	0
353	no_idle	affects idling behavior and should not normally need to be modified.	float	10,000	0
354	nonbonded_as_cylinders	Draw nonbonded crosses as cylinders instead of lines	bool	on	0
355	nonbonded_size	(float, default:0.25) controls the size of the nonbonded and nb_sphere representations.			2
356	nonbonded_transparency	(float, default:0.0) controls the transparency of the nonbonded and nb_sphere representations.			3
357	nonbonded_use_shader	If true, on screen rendering of nonbonded crosses uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
358	normal_workaround	is a workaround for OpenGL graphics cards that don't transform normals properly when drawing lines.	boolean	off	0
359	normalize_ccp4_maps	controls whether or not CCP4 maps are automatically normalized upon loading.	boolean	on	0
360	normalize_grd_maps	controls whether or not GRD maps are automatically normalized upon loading.	boolean	off	0
361	normalize_o_maps	controls whether or not O maps are automatically normalized upon loading.	boolean	on	0
362	nvidia_bugs	can sometimes help with broken video card drivers including those affecting old nvidia cards.	integer	0	0
363	offscreen_rendering_for_antialiasing	when doing a [[command:draw]] (for example in movie export without **ray_trace_frames**=on), render the OpenGL image into a buffer which is **offscreen_rendering_multiplier** times bigger.	bool	off	0
364	offscreen_rendering_multiplier	see **offscreen_rendering_for_antialiasing**	float	4.0	0
365	opaque_background	controls whether or not the background is opaque.	boolean	on	0
366	orthoscopic	controls whether or not the perspective transformation is used.	boolean	off	0
367	overlay	controls whether or not output text is shown overlayed on the viewer window.	boolean	off	0
368	overlay_lines	controls the maximum number of lines of overlayed text.	integer	5	0
369	pdb_conect_all	controls whether or not PDB files are written out with CONECT records for all atoms/.	boolean	off	0
370	pdb_conect_nodup	if off, encode bond orders by duplicating CONECT records when writing PDB files //(new in PyMOL 1.6.1)//.	boolean	off	0
371	pdb_discrete_chains	controls whether or not bonds are allowed between chains within a PDB file.	integer	-1	0
372	pdb_echo_tags	controls which tags in the PDB file are echoed to the output.	string	HEADER, TITLE, COMPND	0
373	pdb_hetatm_guess_valences	If true, PyMOL will guess the valences on HETATMs.	bool	on	0
374	pdb_hetatm_sort	controls whether HETATMs are segregated.	boolean	off	1
375	pdb_honor_model_number	controls whether or not PDB MODEL numbers are used as state indices.	boolean	off	0
376	pdb_ignore_conect	If true, PyMOL ignores CONECT records from PDB files. This causes PyMOL to use structural knowledge to bond atoms. See also [[setting:connect|connect_mode]].	bool	off	0
377	pdb_insertions_go_first	controls how insertion residues are sorted.	boolean	off	0
378	pdb_insure_orthogonal	controls whether or not suspicious PDB SCALEn matrices are ignored.	boolean	on	0
379	pdb_literal_names	controls whether or not names are preserved literally.	boolean	off	0
380	pdb_no_end_record	controls whether or not an END record is omitted.	boolean	off	0
381	pdb_reformat_names_mode	(integer: 0-4, default: 0) affects how and whether or not PDB names are reformatted in order to attempt to meet alternate conventions.			0
382	pdb_retain_ids	controls whether or not PDB files are written out with their original identifier numbers preserved intact.	boolean	off	0
383	pdb_standard_order	controls whether or not PDB atoms are sorted using the standard conventions.	boolean	on	0
384	pdb_truncate_residue_name	controls whether or not PDB residue names are truncated to three letters only.	boolean	off	0
385	pdb_unbond_cations	controls whether or not cations within bonding distances are left unbound during automatically bond detection.	boolean	on	0
386	pdb_use_ter_records	controls whether or not TER records are written.	boolean	on	0
387	pick_labels	controls whether labels are picked. These work on the object or global level. 0 - do not pick labels 1 - pick labels 2 - only pick labels (i.e., do not pick anything else)	integer	1	2
388	pickable	controls whether or not extra resources are expended in order to enable picking of displayed geometry using the mouse.	boolean	on	2
389	png_file_gamma	file gamma value for PNG file output.	float	1.0	0
390	png_screen_gamma	screen gamma value for PNG file output.	float	2.4	0
391	polar_neighbor_cutoff	cutoff for finding polar neighbors in measurements wizard.	float	3.5	0
392	power	controls how light is scattered.	float	1.0	0
393	pqr_no_chain_id	controls whether or not PQR files are written without chain identifiers.	boolean	on	0
394	precomputed_lighting	Alternative lighting implementation for shaders, might give performance improvement.	boolean	off	0
395	presentation	reports whether or not presentation (show) mode is active.	boolean	off	0
396	presentation_auto_quit	controls whether or not presentation mode quits after the	boolean	on	0
397	presentation_auto_start	controls whether or not the first scene is automatically shown.	boolean	on	0
398	presentation_mode	reserved.	integer	1	0
399	preserve_chempy_ids	controls whether or not Chemical Python objects are loaded with their identifiers preserved.	boolean	off	0
400	pse_binary_dump	Unsupported. Creates smaller and faster loading PSE files. See also pse_export_version.	boolean	off	0
401	pse_export_version	For saving a PSE for an older PyMOL version. Example: 1.74 to save a session for PyMOL 1.7.4. Has limitations, e.g. scenes before 1.7.6 and volume before 1.7.2.	float	0	0
402	raise_exceptions	Obsolete, PyMOL now always raises exceptions on error.	boolean	on	0
403	rank_assisted_sorts	controls whether or not the position of an atom in the input file is using in the sorting algorithm.	boolean	on	0
404	ray_blend_blue	controls blending of the blue component when blending colors.	float	0.14	0
405	ray_blend_colors	controls whether or not the raytracer blends oversaturated colors.	boolean	off	0
406	ray_blend_green	controls blending of the green component when blending colors.	float	0.25	0
407	ray_blend_red	controls blending of the red component when blending colors.	float	0.17	0
408	ray_clip_shadows	controls whether or not shadows take into account the front clipping plane.	boolean	off	0
409	ray_color_ramps	controls whether or not color ramps are sampled on a per-pixel basis for surfaces (as opposed to per-vertex).	boolean	off	2
410	ray_default_renderer	controls which renderer is used: 0 = PyMOL's builtin raytracer 1 = PovRay (if available) 2 = A simple geometry counter with no output	integer	0	0
411	ray_direct_shade	controls whether or not shaded regions are still lit by the direct light eminating from the camera.	float	0.0	0
412	ray_hint_camera	affects how the raytracer optimizes camera hash table sizes based on the average size of input primitives.	float	2.15	0
413	ray_hint_shadow	affects how the raytracer optimizes shadow hash table sizes based on the average size of input primitives.	float	0.65	0
414	ray_improve_shadows	controls how much the raytracer tries to extrapolate triangle coordinates in order to improve shadow appearance.	float	0.10	0
415	ray_interior_color	controls the color of interiors in the raytracer.	color	-1	2
416	ray_interior_mode	when set to 2, triangle-based (sphere or cartoon) interiors are ignored but not those of spheres (atoms) or cylinders (bonds).	integer	0	0
417	ray_interior_reflect	controls how reflective the interior surface is.	float	0.4	0
418	ray_interior_shadows	controls whether or not interior surfaces can be shadowed by geometry beyond the front clipping plane.	boolean	off	0
419	ray_interior_texture	(integer: -1-5, default: -1) controls what texture (if any) is applied to the interior surface.			0
420	ray_label_connector_flat	controls whether the connector and outline are drawn as flat geometry. If this setting is not set, then cylinders are used.	boolean	on	4
421	ray_label_specular	controls whether or not specular reflections apply to labels	boolean	on	0
422	ray_legacy_lighting	(float: 0-1.0, default: 0.0) controls blending of the old legacy PyMOL lighting model.			0
423	ray_max_passes	controls how many passes the raytracer can make when dealing with transparent primitives.	integer	25	0
424	ray_opaque_background	controls whether or not the raytracer background is opaque. If -1, then [[setting:bg|opaque_background]] controls.	integer	-1	0
425	ray_orthoscopic	controls whether or not the raytracer renders using an orthoscopic projection. If -1, then [[setting:animation|orthoscopic]] controls.	integer	-1	0
426	ray_oversample_cutoff	controls how different two adjacent pixels need to be in order to trigger oversampling when antialias is greater than 0.	integer	120	0
427	ray_pixel_scale	controls how the screen pixels size is scaled to a raytracer distance.	float	1.3	0
428	ray_shadow	controls whether or not shadows are cast in the raytracer.	integer	1	0
429	ray_shadow_decay_factor	controls how fast shadows decay (0.0 = no decay).	float	0.0	0
430	ray_shadow_decay_range	controls how far shadows must extend before they begin to decay.	float	1.8	0
431	ray_shadow_fudge	is a tuning parameter that should not need to be modified.	float	0.001	0
432	ray_texture	(integer: 0-5, default: 0) controls what built-in texture (if any) is applied.			2
433	ray_texture_settings	affects texture appearance.	vector	[ 0.1, 5.0, 1.0 ]	2
434	ray_trace_color	Controls the ray trace gain color. Ray trace gain is used when ray_trace_mode is set to 1.	color	-6	0
435	ray_trace_depth_factor	is a tuning parameter for ray_trace_modes 1-3.	float	0.1	0
436	ray_trace_disco_factor	is a tuning parameter for ray_trace_modes 1-3.	float	0.05	0
437	ray_trace_fog	controls fog density when raytracing. If -1.0, then the [[setting:bg|fog]] setting is used.	float	-1.0	0
438	ray_trace_fog_start	controls fog start when raytracing. If -1.0, then the [[setting:bg|fog_start]] setting is used.	float	-1.0	0
439	ray_trace_frames	Controls whether or not PyMOL ray traces movie frames. This can increase movie quailty, but at the expense of moviemaking speed.	bool	off	0
440	ray_trace_gain	is a gain parameter for ray_trace_modes 1-3.	float	0.12	0
441	ray_trace_mode	controls the behavior of the built-in ray tracer (see [[http://www.pymolwiki.org/index.php/Ray#Modes|PyMOLWiki]] for sample images): 0 = normal raytracing 1 = color raytracing with outlines 2 = black & white raytracing with outlines (use a white background) 3 = quantized color raytracing with outlines	integer	0	0
442	ray_trace_slope_factor	is a tuning parameter for ray_trace_modes 1-3.	float	0.6	0
443	ray_transparency_contrast	(float: 1.0-3.0, default: 1.0) can be used to boost the contrast of objects under transparent surfaces.			0
444	ray_transparency_oblique	Controls whether PyMOL uses normal-based transparency for rendering surfaces.	float	0.0	0
445	ray_transparency_oblique_power	Controls the strength of transparency for normal-based transparency when rendering surfaces. Requires ray_transparency_oblique setting to be enabled.	float	1.0	0
446	ray_transparency_shadows	controls whether or not transparency geometries cast shadows.	boolean	on	0
447	ray_transparency_spec_cut	affects the strength of the specular effect on transparent surfaces.	float	0.9	0
448	ray_transparency_specular	affects the strength of the specular effect on transparent surfaces.	float	0.4	0
449	ray_triangle_fudge	is a tuning parameter that should not need to be modified.	float	0.0000001	0
450	ray_volume	If true then volumes will be ray added to ray traced scenes.	boolean	off	0
451	reflect	(float 0-1.0, default: 0.45) controls the aggregate intensity of the movable light sources.			0
452	reflect_power	controls the reflective exponent for the movable light sources.	float	1.0	0
453	retain_order	controls whether or not PyMOL sorts atoms internally.	boolean	off	1
454	ribbon_color	controls the color of the ribbon representation.	color	-1	3
455	ribbon_nucleic_acid_mode	(integer 0-4, default:0) controls how the nucleic acid backbone is drawn: 0: through phosphorus 1: through C4* carbon of the ribose ring 2: through phosphorus with 3' extension 3: through phosphorus with 5' extension 4: through phorphorus with both 3' and 5' extensions			2
456	ribbon_power	affects ribbon shape.	float	2.0	2
457	ribbon_power_b	affects ribbon shape.	float	0.5	2
458	ribbon_radius	if greater than 0.0, controls the radius used when rendering the ribbon.	float	0.0	2
459	ribbon_sampling	controls how many segments are used between the guide points.	integer	1	2
460	ribbon_side_chain_helper	controls whether or not atom and bond representations are automatically hidden for main chain atoms when the ribbon is shown.	boolean	off	3
461	ribbon_smooth	controls whether or not the ribbon representation is drawn with smooth (antialiased) lines.	boolean	-1	1
462	ribbon_throw	affects ribbon shape.	float	1.35	2
463	ribbon_trace_atoms	controls whether or not the ribbon representation traces through all atoms or just guide atoms.	boolean	off	2
464	ribbon_use_shader	If true, on screen rendering of ribbons uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
465	ribbon_width	controls the thickness of the ribbon representation in pixels.	float	3.0	2
466	robust_logs	controls whether or not atom selections are logged by property match (slow & robust) or by object index (fast & fragile).	boolean	off	0
467	rock	Controls whether PyMOL animates real time rocking of the current scene. See also [[command:rock|rock command]].	bool	off	0
468	rock_delay	controls the rocking update frequency.	float	30.0	0
469	roving_byres	controls whether or not roving display is per-residue.	boolean	on	0
470	roving_cartoon	is the cutoff radius for cartoons.	float	0.0	0
471	roving_delay	delay between updates.	float	0.2	0
472	roving_detail	enables or disables roving detail.	boolean	off	0
473	roving_isomesh	is the cutoff radius for isosurface meshes.	float	8.0	0
474	roving_isosurface	is the cutoff radius for solid isosurfaces.	float	0.0	0
475	roving_labels	is the cutoff radius for labels.	float	0.0	0
476	roving_lines	(float, default: 0.0) is the cutoff radius for lines.			0
477	roving_map1_level	(float, default: 1.0)			0
478	roving_map1_name	(string, default: blank)			0
479	roving_map2_level	(float, default: 2.0)			0
480	roving_map2_name	(string, default: blank)			0
481	roving_map3_level	(float, default: 3.0)			0
482	roving_map3_name	(string, default: blank)			0
483	roving_nb_spheres	is the cutoff radius for nonbonded spheres.	float	0.0	0
484	roving_nonbonded	is the cutoff radius for nonbonded.	float	0.0	0
485	roving_origin	controls whether or not the origin moves with the screen.	boolean	on	0
486	roving_origin_z	controls whether or not the Z component of the origin moves with the clipping planes.	boolean	on	0
487	roving_origin_z_cushion	controls how close the origin can come to the clipping planes.	float	3.0	0
488	roving_polar_contacts	is the cutoff radius for polar contacts.	boolean	7.0	0
489	roving_polar_cutoff	is the distance cutoff for the polar contacts.	float	3.31	0
490	roving_ribbon	is the cutoff radius for ribbons.	boolean	-7.0	0
491	roving_selection	is the roving selection.	string	all	0
492	roving_spheres	is the cutoff radius for spheres.	float	0.0	0
493	roving_sticks	is the cutoff radius for sticks.	float	6.0	0
494	scene_animation	controls whether or not scenes are animated. If negative, then [[setting:animation|animation]] controls.	integer	-1	0
495	scene_animation_duration	controls how long it takes to interpolate the camera between scenes.	float	2.25	0
496	scene_buttons	Controls whether PyMOL displays scene buttons on screen.	bool	off	0
497	scene_current_name	contains the name of the current scene (if any).	string	blank	0
498	scene_loop	controls whether or not the scenes loop without an intervening blank scene.	boolean	on	0
499	scenes_changed	this is a setting PyMOL uses internally.	float	1.0	0
500	sculpt_angl_weight	(float) undocumented and unsupported.			2
501	sculpt_auto_center	(boolean) undocumented and unsupported.			0
502	sculpt_avd_excl	(integer) undocumented and unsupported.			2
503	sculpt_avd_gap	(float) undocumented and unsupported.			2
504	sculpt_avd_range	(float) undocumented and unsupported.			2
505	sculpt_avd_weight	(float) undocumented and unsupported.			2
506	sculpt_bond_weight	(float) undocumented and unsupported.			2
507	sculpt_field_mask	(integer) undocumented and unsupported.			2
508	sculpt_hb_overlap	(float) undocumented and unsupported.			2
509	sculpt_hb_overlap_base	(float) undocumented and unsupported.			2
510	sculpt_line_weight	(float) undocumented and unsupported.			2
511	sculpt_max_max	(float) undocumented and unsupported.			2
512	sculpt_max_min	(float) undocumented and unsupported.			2
513	sculpt_max_scale	(float) undocumented and unsupported.			2
514	sculpt_max_weight	(float) undocumented and unsupported.			2
515	sculpt_memory	undocumented and unsupported.	boolean	on	2
516	sculpt_min_max	(float) undocumented and unsupported.			2
517	sculpt_min_min	(float) undocumented and unsupported.			2
518	sculpt_min_scale	(float) undocumented and unsupported.			2
519	sculpt_min_weight	(float) undocumented and unsupported.			2
520	sculpt_nb_interval	(integer) undocumented and unsupported.			2
521	sculpt_plan_weight	(float) undocumented and unsupported.			2
522	sculpt_pyra_weight	(float) undocumented and unsupported.			2
523	sculpt_tors_tolerance	(float) undocumented and unsupported.			2
524	sculpt_tors_weight	(float) undocumented and unsupported.			2
525	sculpt_tri_max	(float) undocumented and unsupported.			2
526	sculpt_tri_min	(float) undocumented and unsupported.			2
527	sculpt_tri_mode	(integer) undocumented and unsupported.			2
528	sculpt_tri_scale	(float) undocumented and unsupported.			2
529	sculpt_tri_weight	(float) undocumented and unsupported.			2
530	sculpt_vdw_scale	(float) undocumented and unsupported.			2
531	sculpt_vdw_scale14	(float) undocumented and unsupported.			2
532	sculpt_vdw_vis_max	(float) undocumented and unsupported.			2
533	sculpt_vdw_vis_mid	(float) undocumented and unsupported.			2
534	sculpt_vdw_vis_min	(float) undocumented and unsupported.			2
535	sculpt_vdw_vis_mode	(float) undocumented and unsupported.			2
536	sculpt_vdw_weight	(float) undocumented and unsupported.			2
537	sculpt_vdw_weight14	(float) undocumented and unsupported.			2
538	sculpting	controls whether or not sculpting is performed.	boolean	off	2
539	sculpting_cycles	controls how many sculpting cycles are performed per update.	integer	10	1
540	secondary_structure	(int 1-4, default: 2) Secondary structure phi/psi angle preset with the builder 1 = Helix 2 = Antiparallel Beta Sheet 3 = Parallel Beta Sheet 4 = Extended (180°/180°)			0
541	security	is an internal setting.	integer	1	0
542	sel_counter	when auto_number_selections is on, this setting tracks the number of the last selection created.	integer	0	0
543	selection_overlay	controls whether the visual selection indicators are overlayed on top of the 3D geometry or drawn together with them, in which case they may be hidden by the atom representation.	integer	on	0
544	selection_round_points	controls whether the selection indicators are drawn as square or round points.	boolean	on	0
545	selection_visible_only	controls whether all selected atoms are indicated or only those with at least one visible representation.	boolean	off	0
546	selection_width	controls the minimum width of selection indicators in pixels.	float	3.0	0
547	selection_width_max	controls the maximum width of selection indicators in pixels.	float	10.0	0
548	selection_width_scale	controls the rate at which selection indicators are scaled.	float	2.0	0
549	seq_view	controls whether or not the sequence viewer is active.	boolean	off	1
550	seq_view_alignment	currently unsupported.	string	blank	0
551	seq_view_color	controls the color of the sequence view (default = atom colors).	color	-1	2
552	seq_view_discrete_by_state	currently unsupported.			1
553	seq_view_fill_char	currently unsupported.			0
554	seq_view_fill_color	currently unsupported.			0
555	seq_view_format	controls the format of the sequence viewer. 0 = one-letter residue codes (if known) 1 = residue codes 2 = atoms 3 = chains 4 = states	integer	0	1
556	seq_view_gap_mode	controls whether gaps are shown in sequence.	integer	0	0
557	seq_view_label_color	controls the color of label text.	color	white	0
558	seq_view_label_mode	controls what labels are shown: 0 = object names only 1 = object names and identifier labels for first object only 2 = object names and identifier labels for all objects 3 = nothing	integer	2	0
559	seq_view_label_spacing	affects the spacing of labels.	integer	2	1
560	seq_view_label_start	function unknown.	integer	1	1
561	seq_view_location	controls the location of the sequence viewer. 0 = top 1 = bottom	integer	0	0
562	seq_view_overlay	controls whether or not the sequence view overlays the 3D molecular graphics.	boolean	off	0
563	seq_view_unaligned_color	currently unsupported.	color	-1	0
564	seq_view_unaligned_mode	currently unsupported.	integer	0	0
565	session_changed	(boolean, default off) used internally by PyMOL to keep track of whether or not the session has been changed.			0
566	session_file	contains the filename of the current session file (if any).	string	blank	0
567	session_migration	controls whether or not old sessions are automatically adapted into new PyMOL versions upon loading.	boolean	on	0
568	session_version_check	controls whether or not a version check is performed when loading sessions.	boolean	on	0
569	shader_path	Defines the location at which PyMOL searches for OpenGL shader language (GLSL) files.	str	data/shaders	0
570	shininess	is the specular exponent for the movable light sources.	float	55.0	0
571	show_alpha_checker	controls whether or not a checker pattern is shown in the background.	boolean	on	0
572	show_progress	controls whether or not a progress bar is shown in the viewer window.	boolean	on	0
573	single_image	controls whether or not PyMOL can can assume that each molecular state corresponds to only one single movie image. This setting can enable optimized rendering of still frames with certain types of molecular movies, but it is not generally applicable.	boolean	off	0
574	slice_dynamic_grid	controls whether or not sampling grid is adjusted based on proximity to the camera.	boolean	off	1
575	slice_dynamic_grid_resolution	controls how finely the grid is sampled (in screen pixels).	float	3.0	1
576	slice_grid	controls the space of the static sampling grid.	float	0.3	1
577	slice_height_map	enables or disables the height map display.	boolean	off	1
578	slice_height_scale	is the scaling factor for the height map.	float	1.0	1
579	slice_track_camera	controls whether or not the grid is maintained in a plane perpendicular to the camera and passing through the origin of rotation.	boolean	on	1
580	slow_idle	affects idling behavior and should not normally need to be modified.	float	200,000	0
581	solvent_radius	is the radius used in computing the surface as well as a number of other solvent-dependent properties within PyMOL.	float	1.4	2
582	spec_count	controls how many movable light sources are used when drawing specular reflections.	integer	-1	0
583	spec_direct	controls the specular intensity for the camera light source.	float	0.0	0
584	spec_direct_power	controls the specular exponent for camera light source.	float	55.0	0
585	spec_power	controls the specularity power coefficient for the raytracer. If < 0.0, then [[setting:light|shininess]] is used.	float	-1.0	0
586	spec_reflect	controls specularity intensity for the raytracer. If < 0.0, then [[setting:light|specular_intensity]] is used.	float	-1.0	0
587	specular	controls the specular intensity for movable light sources.	float	1.0	0
588	specular_intensity	controls the specular intensity for movable light sources, if specular is set to 1.0.	float	0.5	0
589	sphere_color	controls the color of the sphere representation. By default, spheres assume atom coloring.	color	-1	3
590	sphere_mode	controls how spheres are drawn. This setting is essential for boosting OpenGL performance when working with million-atom systems. 0 = use triangles 1 = use flat-lit minimal square points 2 = use flat-lit scaled square points 3 = use scaled rounded points (if available) 4 = use sphere imposters constructed of multiple rounded circles 5 = use fragment programs to drag pixel-perfect spheres 6 = use minimal square points with an environment-based normal 7 = use scaled square points with an environment-based normal 8 = use scaled rounded points with an environment-based normal	integer	-1	2
591	sphere_point_max_size	limits the maximum size of point representations.	float	10.0	2
592	sphere_point_size	controls the point size for sphere modes 1 and 6.	float	1.0	0
593	sphere_scale	controls how spheres are scaled relative to an atoms van der waals radius.	float	1.0	3
594	sphere_solvent	controls whether or not a solvent radius is added to the sphere radius.	boolean	off	2
595	sphere_transparency	controls the transparency of the sphere representation.	float	0.0	3
596	sphere_use_shader	If true, on screen rendering of spheres uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
597	ss_helix_phi_exclude	is a helix detection parameter for the phi angle.	float	85.0	0
598	ss_helix_phi_include	is a helix detection parameter for the phi angle.	float	55.0	0
599	ss_helix_phi_target	is a helix detection parameter for the phi angle.	float	-57.0	0
600	ss_helix_psi_exclude	is a helix detection parameter for the psi angle.	float	85.0	0
601	ss_helix_psi_include	is a helix detection parameter for the psi angle.	float	55.0	0
602	ss_helix_psi_target	is a helix detection parameter for the psi angle.	float	-48.0	0
603	ss_strand_phi_exclude	is a strand detection parameter for the phi angle.	float	100.0	0
604	ss_strand_phi_include	is a strand detection parameter for the phi angle.	float	40.0	0
605	ss_strand_phi_target	is a strand detection parameter for the phi angle.	float	-129.0	0
606	ss_strand_psi_exclude	is a strand detection parameter for the psi angle.	float	90.0	0
607	ss_strand_psi_include	is a strand detection parameter for the psi angle.	float	40.0	0
608	ss_strand_psi_target	is a strand detection parameter for the psi angle.	float	124.0	0
609	state	stores the value of the current molecular state.	integer	1	1
610	static_singletons	controls whether or not PyMOL will treat molecular objects consisting of only of a single molecular state (state 1), as being present in all molecular states. This is a convenient optimization when rendering movies where some objects are completely static, and others have moving coordinates.	boolean	on	1
611	stereo	can be used to determine whether or not stereo is active.	boolean	off	0
612	stereo_angle	affects stereo separation. stereo_angle is a scaling factor applied to the natural angular difference which would occur between two eyes at that distance, both looking at the objective.	float	2.1	0
613	stereo_double_pump_mono	controls whether or not stereo contexts are used to render monoscopic contexts (required for some systems).	boolean	off	0
614	stereo_mode	can be used to determine the current stereo mode: 1 = quadbuffer 2 = cross eye 3 = wall eye 4 = geowall 5 = sidebyside 6 = byrow 7 = bycolumn 8 = checkerboard 9 = custom 10 = anaglyph 11 = dynamic 12 = clonedynamic	integer	1	0
615	stereo_shift	affects stereo separation. stereo_shift is the separation between the two cameras observing the image, expressed as a % of the distance from the objective.	float	2.0	0
616	stick_ball_ratio	controls the radius of the ball relative to that of the stick	float	1.0	2
617	stick_color	contols the color of the stick representation. Atom color are used by default.	color	-1	2
618	stick_fixed_radius	when the [[setting:connect|valence]] setting is enabled, this setting controls whether or not valence bonds are shown using cylinders of fixed or variable radius.	boolean	off	2
619	stick_nub	controls the size of the cone placed on the end of cylinders.	float	0.7	2
620	stick_overlap	control how far stick cylinders are extended beyond atom coordinates.	float	0.2	2
621	stick_radius	controls the radius of the cylinder.	float	0.25	2
622	stick_transparency	controls transparency of the stick representation.	float	0.0	2
623	stick_use_shader	If true, on screen rendering of sticks uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	bool	on	0
624	stick_valence_scale	controls the radius of the invisible cylinder within which bond valences are shown relative to the stick radius.	float	1.0	2
625	stop_on_exceptions	controls whether or not script execution is halted after an error is encountered.	boolean	off	0
626	surface_best	is a tuning parameter that should not need to be modified.	float	0.25	2
627	surface_carve_cutoff	controls the cutoff distance from surface_carve_selection atoms which surface points must meet to be included in the carved surface.	float	0.0	2
628	surface_carve_normal_cutoff	controls the dot product threshold from surface_carve_selection atoms which surface points must meet to be included in the carved surface.	float	-1.0	2
629	surface_carve_selection	is the named selection of atoms about which the surface is carved.	string	blank	2
630	surface_carve_state	is the controlling state for surface carving. By default, the corresponding coordinate set state is used.	integer	0	2
631	surface_circumscribe	(integer 0-120, default: -1) is a parameter that can be used to force approximate surfaces to track concave regions more closely, but this can degrade visual aesthetics. By default, this setting is automatically activated to improve the quality of certain surface types.			2
632	surface_clear_cutoff	controls the cutoff distance from surface_clear_selection atoms which surface points must meet to be excluded for the carved surface.	float	0.0	2
633	surface_clear_selection	is the named selection of atoms about which the carved surface avoids.	string	blank	2
634	surface_clear_state	is the controlling state for clearing.	integer	0	2
635	surface_color	controls the surface color. By default, surfaces assume the color of the underlying atom.	color	-1	3
636	surface_debug	activates debugging mode for development.	integer	0	0
637	surface_miserable	is a tuning parameter that should not need to be modified.	float	2.0	2
638	surface_mode	controls what atoms are considered when generating the surface: 0 = consider atoms based on their ignore and exfoliate flags. 1 = consider all atoms 2 = condider only non-hydrogen atoms	integer	0	2
639	surface_normal	is a tuning parameter that should not need to be modified.	float	0.5	2
640	surface_optimize_subsets	tells PyMOL that it can compute a subsurface without rendering the entire surface. This option should be disabled when trying to effectively multiple surface from identical objects.	boolean	on	2
641	surface_poor	is a tuning parameter that should not need to be modified.	float	0.85	2
642	surface_proximity	controls whether or not PyMOL draws triangle with one or two vertices belonging to atoms not currently shown.	boolean	on	2
643	surface_quality	(integer: -4 to 4, default: 0) controls how many triangles are used to render the surface. Surface qualities of 2 and above are only practical for very small systems. Surface qualities below 2 are only practical for large globular systems.			2
644	surface_ramp_above_mode	controls whether surfaces are colored by the value at the surface or one solvent radius above the surface.	boolean	off	2
645	surface_solvent	controls whether or not solvent accessible surfaces are generated.	boolean	off	2
646	surface_smooth_edges	makes edges of trimmed surfaces (e.g. ligand binding sites) smoother by averaging consecutive vertex positions.	boolean	off	2
647	surface_trim_cutoff	(float, default:0.2) is a tuning parameter that should not need to be modified.			2
648	surface_trim_factor	(float, default:2.0) is a tuning parameter that should not need to be modified.			2
649	surface_type	controls what kind of surface is generated: 0 = a solid surface via PyMOL's conventional algorithm. 1 = a dot surface via PyMOL's conventional algorithm. 2 = a triangle mesh surface via PyMOL's conventional algorithm. 3 = a solid surface using a deterministic algorithm better suited to dynamic surface animations. 4 = a solid surface using the algorithm from 3 with different weightings. 5 = a solid surface where all points are generated from pairwise scribed intersections instead of virtual solvent atoms.	integer	0	2
650	surface_use_shader	If true, on screen rendering of surfaces uses the OpenGL shader language (GLSL). If false, OpenGL v1.x style rendering is used.	boolean	on	0
651	suspend_undo	If on, undo is disabled.	bool	off	0
652	suspend_undo_atom_count	Objects with more atoms than the value of this setting are ignored for undo. If set to 0, however, all objects are tracked regardless of atom count.	integer	1000	0
653	swap_dsn6_bytes	controls whether or not dsn6 maps are automatically byte swapped.	boolean	on	0
654	sweep_angle	controls the sweep angle when rocking.	float	20.0	0
655	sweep_mode	controls how rocking is perfoming: 0 = y-axis 1 = x-axis 2 = z-axis 3 = xy nutation	integer	0	0
656	sweep_phase	controls the phase of the rocking motion.	float	0.0	0
657	sweep_speed	controls the speed of the rocking motion.	float	0.75	0
658	test1	(float) is sometimes used in development.			0
659	test2	(float) is sometimes used in development.			0
660	text	controls whether the viewer window is filled with text or graphics.	boolean	off	0
661	texture_fonts	(DEPRECATED; boolean, default: off) controls whether labels are drawn using textures or bitmaps, if both choices are available.			0
662	trace_atoms_mode	controls how chain breaks are found when tracing atoms.	integer	5	2
663	transparency	controls surface transparency	float	0.0	3
664	transparency_mode	controls how transparency is rendered: 0 = fast and ugly 1 = multi-layer 2 = uni-layer	integer	2	2
665	transparency_picking_mode	affects whether or not transparency objects can be picked using the mouse.	integer	2	2
666	triangle_max_passes	controls how much time PyMOL is allowed to spend attempting to resolve problematic surface regions.	integer	5	0
667	trim_dots	controls whether or not certain atoms are treated differently based on their ignore and exfoliate flags.	boolean	on	2
668	two_sided_lighting	controls whether both faces of a triangle are lit or just the front face (as defined by convention).	boolean	on	2
669	use_shaders	If true, the OpenGL shader language (GLSL) is used for on screen rendering. If false, the OpenGL v1.x rendering pipeline is used.	boolean	on	2
670	valence	controls whether or not bond valences are shown.	boolean	off	2
671	valence_size	controls how far apart bond valences are drawn.	float	0.06	2
672	valence_zero_mode	Appearance of zero order bonds (lines and sticks): 0=skip, 1=dashed (default), 2=solid	integer	1	2
673	valence_zero_scale	Stick radius of zero order bonds, relative to 'stick_radius'	float	0.2	2
674	validate_object_names	controls whether or not object names are constrained to only contain safe characters.	boolean	on	0
675	virtual_trackball	controls whether or not a virtual trackball is used.	boolean	on	0
676	volume_bitdepth	Number of bits used per RGB channel for representing color.	integer	8	0
677	volume_color	(array, default: default)			0
678	volume_data_range	Number of standard deviations above and below the mean around which color ramps should be colored.	float	5.0	1
679	volume_layers	Number of layers used to draw the volumes on screen. Drawing fewer layers increases real-time rendering speed; more layers reduces rendering speed, but increases color intensity.	integer	256	1
680	volume_mode	Volume rendering method: 0 = post-classified (faster); 1 = pre-integrated (better)	integer	1	0
681	wildcard	controls the wildcard character used in matching selections.	string	*	1
682	wizard_prompt_mode	affects how wizard prompts are shown.	integer	1	0
683	wrap_output	this setting is apparently broken.	boolean	off	0