diff --git a/Code/DataManip/MetricMatrixCalc/testExecs/.cvskeep b/Code/DataManip/MetricMatrixCalc/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/BinaryIO/Makefile b/Code/Demos/RDKit/Basement/BinaryIO/Makefile old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/Makefile b/Code/Demos/RDKit/Basement/TemplEnum/Makefile old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/Ts.1.sdf b/Code/Demos/RDKit/Basement/TemplEnum/Ts.1.sdf old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/Ts.sdf b/Code/Demos/RDKit/Basement/TemplEnum/Ts.sdf old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/box.1.mol b/Code/Demos/RDKit/Basement/TemplEnum/box.1.mol old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/box.1a.mol b/Code/Demos/RDKit/Basement/TemplEnum/box.1a.mol old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/box.mol b/Code/Demos/RDKit/Basement/TemplEnum/box.mol old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/esters.2.sdf b/Code/Demos/RDKit/Basement/TemplEnum/esters.2.sdf old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/esters.sdf b/Code/Demos/RDKit/Basement/TemplEnum/esters.sdf old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/template.1.mol b/Code/Demos/RDKit/Basement/TemplEnum/template.1.mol old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/template.2.mol b/Code/Demos/RDKit/Basement/TemplEnum/template.2.mol old mode 100755 new mode 100644 diff --git a/Code/Demos/RDKit/Basement/TemplEnum/template.mol b/Code/Demos/RDKit/Basement/TemplEnum/template.mol old mode 100755 new mode 100644 diff --git a/Code/Demos/boost/EBV_err/crossMod.dsw b/Code/Demos/boost/EBV_err/crossMod.dsw old mode 100755 new mode 100644 diff --git a/Code/Demos/boost/any_container/Makefile b/Code/Demos/boost/any_container/Makefile old mode 100755 new mode 100644 diff --git a/Code/Demos/boost/cross_mod_err/crossMod.dsw b/Code/Demos/boost/cross_mod_err/crossMod.dsw old mode 100755 new mode 100644 diff --git a/Code/Demos/boost/cross_module/readme.txt b/Code/Demos/boost/cross_module/readme.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/testExecs/.cvskeep b/Code/GraphMol/Depictor/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/test_data/7UPJ_default.mol b/Code/GraphMol/Depictor/test_data/7UPJ_default.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/test_data/7UPJ_mimic3D_1.mol b/Code/GraphMol/Depictor/test_data/7UPJ_mimic3D_1.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/test_data/7UPJ_mimic3D_2.mol b/Code/GraphMol/Depictor/test_data/7UPJ_mimic3D_2.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/test_data/7UPJ_spread.mol b/Code/GraphMol/Depictor/test_data/7UPJ_spread.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/test_data/7UPJ_xtal.mol b/Code/GraphMol/Depictor/test_data/7UPJ_xtal.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Depictor/test_data/first_200.tpsa.csv b/Code/GraphMol/Depictor/test_data/first_200.tpsa.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/mol1.cdxml b/Code/GraphMol/FileParsers/mol1.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/testExecs/.cvskeep b/Code/GraphMol/FileParsers/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/Issue180.mol b/Code/GraphMol/FileParsers/test_data/Issue180.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/NCI_aids_few.sdf b/Code/GraphMol/FileParsers/test_data/NCI_aids_few.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/badringstereochem.mol b/Code/GraphMol/FileParsers/test_data/badringstereochem.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/badringstereochem2.mol b/Code/GraphMol/FileParsers/test_data/badringstereochem2.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/badringstereochem3.mol b/Code/GraphMol/FileParsers/test_data/badringstereochem3.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/bond-query.mol b/Code/GraphMol/FileParsers/test_data/bond-query.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/chiral1.mol b/Code/GraphMol/FileParsers/test_data/chiral1.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/chiral2.mol b/Code/GraphMol/FileParsers/test_data/chiral2.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/chiral3.mol b/Code/GraphMol/FileParsers/test_data/chiral3.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/chiral4.mol b/Code/GraphMol/FileParsers/test_data/chiral4.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/cmpd1.tpl b/Code/GraphMol/FileParsers/test_data/cmpd1.tpl old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/cmpd2.tpl b/Code/GraphMol/FileParsers/test_data/cmpd2.tpl old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/earlyEOF.sdf b/Code/GraphMol/FileParsers/test_data/earlyEOF.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/empty.sdf b/Code/GraphMol/FileParsers/test_data/empty.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/empty.smi b/Code/GraphMol/FileParsers/test_data/empty.smi old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/esters.sdf b/Code/GraphMol/FileParsers/test_data/esters.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/esters_end.sdf b/Code/GraphMol/FileParsers/test_data/esters_end.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/fewSmi.2.csv b/Code/GraphMol/FileParsers/test_data/fewSmi.2.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/fewSmi.csv b/Code/GraphMol/FileParsers/test_data/fewSmi.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/first_200.tpsa.csv b/Code/GraphMol/FileParsers/test_data/first_200.tpsa.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/issue123.mol b/Code/GraphMol/FileParsers/test_data/issue123.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/list-query.mol b/Code/GraphMol/FileParsers/test_data/list-query.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/missingCR.sdf b/Code/GraphMol/FileParsers/test_data/missingCR.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/mol1.mol b/Code/GraphMol/FileParsers/test_data/mol1.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/outNCI_arom.sdf b/Code/GraphMol/FileParsers/test_data/outNCI_arom.sdf old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FileParsers/test_data/triazine.mol b/Code/GraphMol/FileParsers/test_data/triazine.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Fingerprints/testExecs/.cvskeep b/Code/GraphMol/Fingerprints/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/ForceFieldHelpers/FFConvenience.h b/Code/GraphMol/ForceFieldHelpers/FFConvenience.h old mode 100755 new mode 100644 diff --git a/Code/GraphMol/ForceFieldHelpers/MMFF/test_data/cyclobutadiene.mol b/Code/GraphMol/ForceFieldHelpers/MMFF/test_data/cyclobutadiene.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/ForceFieldHelpers/UFF/test_data/cyclobutadiene.mol b/Code/GraphMol/ForceFieldHelpers/UFF/test_data/cyclobutadiene.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/Wrap/testFrags.csv b/Code/GraphMol/FragCatalog/Wrap/testFrags.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/Wrap/test_data/testFrags.csv b/Code/GraphMol/FragCatalog/Wrap/test_data/testFrags.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/testExecs/.cvskeep b/Code/GraphMol/FragCatalog/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/test_data/4mols.smi b/Code/GraphMol/FragCatalog/test_data/4mols.smi old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/test_data/funcGroups.txt b/Code/GraphMol/FragCatalog/test_data/funcGroups.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/test_data/mols.smi b/Code/GraphMol/FragCatalog/test_data/mols.smi old mode 100755 new mode 100644 diff --git a/Code/GraphMol/FragCatalog/test_data/testFrags.csv b/Code/GraphMol/FragCatalog/test_data/testFrags.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/MolTransforms/ReadMe b/Code/GraphMol/MolTransforms/ReadMe old mode 100755 new mode 100644 diff --git a/Code/GraphMol/MolTransforms/testExecs/.cvskeep b/Code/GraphMol/MolTransforms/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/PartialCharges/Wrap/test_data/PP_combi_charges.pkl b/Code/GraphMol/PartialCharges/Wrap/test_data/PP_combi_charges.pkl old mode 100755 new mode 100644 diff --git a/Code/GraphMol/PartialCharges/Wrap/test_data/PP_descrs_regress.2.csv b/Code/GraphMol/PartialCharges/Wrap/test_data/PP_descrs_regress.2.csv old mode 100755 new mode 100644 diff --git a/Code/GraphMol/PartialCharges/Wrap/test_data/halgren.smi b/Code/GraphMol/PartialCharges/Wrap/test_data/halgren.smi old mode 100755 new mode 100644 diff --git a/Code/GraphMol/PartialCharges/Wrap/test_data/halgren_out.txt b/Code/GraphMol/PartialCharges/Wrap/test_data/halgren_out.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/SmilesParse/esmiles.flex b/Code/GraphMol/SmilesParse/esmiles.flex old mode 100755 new mode 100644 diff --git a/Code/GraphMol/SmilesParse/esmiles.y b/Code/GraphMol/SmilesParse/esmiles.y old mode 100755 new mode 100644 diff --git a/Code/GraphMol/SmilesParse/regress.txt b/Code/GraphMol/SmilesParse/regress.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/SmilesParse/testExecs/.cvskeep b/Code/GraphMol/SmilesParse/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Subgraphs/testExecs/.cvskeep b/Code/GraphMol/Subgraphs/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Substruct/bond-query.cdxml b/Code/GraphMol/Substruct/bond-query.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Substruct/list-query.cdxml b/Code/GraphMol/Substruct/list-query.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Substruct/regress.txt b/Code/GraphMol/Substruct/regress.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Substruct/testExecs/.cvskeep b/Code/GraphMol/Substruct/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/bond-query.cdxml b/Code/GraphMol/Wrap/test_data/bond-query.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/bond-query.mol b/Code/GraphMol/Wrap/test_data/bond-query.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/bond-query2.mol b/Code/GraphMol/Wrap/test_data/bond-query2.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/bond-query3.mol b/Code/GraphMol/Wrap/test_data/bond-query3.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/bond-query4.mol b/Code/GraphMol/Wrap/test_data/bond-query4.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/bond_types.cdxml b/Code/GraphMol/Wrap/test_data/bond_types.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/chain1.cdxml b/Code/GraphMol/Wrap/test_data/chain1.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/chain2.cdxml b/Code/GraphMol/Wrap/test_data/chain2.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/chain3.cdxml b/Code/GraphMol/Wrap/test_data/chain3.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/chain4.cdxml b/Code/GraphMol/Wrap/test_data/chain4.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/easy_smiles.txt b/Code/GraphMol/Wrap/test_data/easy_smiles.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/list-query.cdxml b/Code/GraphMol/Wrap/test_data/list-query.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/list-query.mol b/Code/GraphMol/Wrap/test_data/list-query.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/mol1.mol b/Code/GraphMol/Wrap/test_data/mol1.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/ntp_smiles.txt b/Code/GraphMol/Wrap/test_data/ntp_smiles.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/query.cdxml b/Code/GraphMol/Wrap/test_data/query.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/query2.mol b/Code/GraphMol/Wrap/test_data/query2.mol old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/ring1.cdxml b/Code/GraphMol/Wrap/test_data/ring1.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/ring2.cdxml b/Code/GraphMol/Wrap/test_data/ring2.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/ring3.cdxml b/Code/GraphMol/Wrap/test_data/ring3.cdxml old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/rtecs_smiles.5000.txt b/Code/GraphMol/Wrap/test_data/rtecs_smiles.5000.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/Wrap/test_data/rtecs_smiles.txt b/Code/GraphMol/Wrap/test_data/rtecs_smiles.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/libs/.cvskeep b/Code/GraphMol/libs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/regress.txt b/Code/GraphMol/regress.txt old mode 100755 new mode 100644 diff --git a/Code/GraphMol/testExecs/.cvskeep b/Code/GraphMol/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/GraphMol/test_data/canonSmiles.long.smi b/Code/GraphMol/test_data/canonSmiles.long.smi old mode 100755 new mode 100644 diff --git a/Code/GraphMol/test_data/canonSmiles.past_problems.smi b/Code/GraphMol/test_data/canonSmiles.past_problems.smi old mode 100755 new mode 100644 diff --git a/Code/GraphMol/test_data/canonSmiles.smi b/Code/GraphMol/test_data/canonSmiles.smi old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/AvalonLib.i b/Code/JavaWrappers/AvalonLib.i old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/csharp_wrapper/Properties/AssemblyInfo.cs b/Code/JavaWrappers/csharp_wrapper/Properties/AssemblyInfo.cs old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/csharp_wrapper/RDKit2DotNet.csproj b/Code/JavaWrappers/csharp_wrapper/RDKit2DotNet.csproj old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Program.cs b/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Program.cs old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Properties/AssemblyInfo.cs b/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/Properties/AssemblyInfo.cs old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/RDKitCSharpTest.csproj b/Code/JavaWrappers/csharp_wrapper/RDKitCSharpTest/RDKitCSharpTest.csproj old mode 100755 new mode 100644 diff --git a/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/InchiTests.java b/Code/JavaWrappers/gmwrapper/src-test/org/RDKit/InchiTests.java old mode 100755 new mode 100644 diff --git a/Code/ML/Cluster/Murtagh/hc.f b/Code/ML/Cluster/Murtagh/hc.f old mode 100755 new mode 100644 diff --git a/Code/ML/Cluster/Murtagh/hcdriver.f b/Code/ML/Cluster/Murtagh/hcdriver.f old mode 100755 new mode 100644 diff --git a/Code/Query/testExecs/.cvskeep b/Code/Query/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/RDGeneral/testExecs/.cvskeep b/Code/RDGeneral/testExecs/.cvskeep old mode 100755 new mode 100644 diff --git a/Code/SimDivPickers/Wrap/test_data/points.csv b/Code/SimDivPickers/Wrap/test_data/points.csv old mode 100755 new mode 100644 diff --git a/Code/notes.txt b/Code/notes.txt old mode 100755 new mode 100644 diff --git a/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef b/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef old mode 100755 new mode 100644 diff --git a/Contrib/PBF/testData/egfr.sdf b/Contrib/PBF/testData/egfr.sdf old mode 100755 new mode 100644 diff --git a/Data/Crippen.txt b/Data/Crippen.txt old mode 100755 new mode 100644 diff --git a/Data/DTDs/RD_Dataset.dtd b/Data/DTDs/RD_Dataset.dtd old mode 100755 new mode 100644 diff --git a/Data/DTDs/RD_Model.dtd b/Data/DTDs/RD_Model.dtd old mode 100755 new mode 100644 diff --git a/Data/FragmentDescriptors.csv b/Data/FragmentDescriptors.csv old mode 100755 new mode 100644 diff --git a/Data/FunctionalGroups.txt b/Data/FunctionalGroups.txt old mode 100755 new mode 100644 diff --git a/Data/NCI/first_200.props.sdf b/Data/NCI/first_200.props.sdf old mode 100755 new mode 100644 diff --git a/Data/NCI/first_200.tpsa.csv b/Data/NCI/first_200.tpsa.csv old mode 100755 new mode 100644 diff --git a/Data/NCI/first_5K.smi b/Data/NCI/first_5K.smi old mode 100755 new mode 100644 diff --git a/Data/NCI/first_5k.tpsa.csv b/Data/NCI/first_5k.tpsa.csv old mode 100755 new mode 100644 diff --git a/Data/RDData.sqlt b/Data/RDData.sqlt old mode 100755 new mode 100644 diff --git a/Data/RDTests.sqlt b/Data/RDTests.sqlt old mode 100755 new mode 100644 diff --git a/Data/SmartsLib/tests/mols.1000.pkl.gz b/Data/SmartsLib/tests/mols.1000.pkl.gz old mode 100755 new mode 100644 diff --git a/Data/rddata.sql b/Data/rddata.sql old mode 100755 new mode 100644 diff --git a/Data/struchk/checkfgs.chk b/Data/struchk/checkfgs.chk old mode 100755 new mode 100644 diff --git a/Data/struchk/checkfgs.opt b/Data/struchk/checkfgs.opt old mode 100755 new mode 100644 diff --git a/Data/struchk/checkfgs.trn b/Data/struchk/checkfgs.trn old mode 100755 new mode 100644 diff --git a/Docs/Book/data/5ht3ligs.sdf b/Docs/Book/data/5ht3ligs.sdf old mode 100755 new mode 100644 diff --git a/Docs/Book/data/cdk2.sdf b/Docs/Book/data/cdk2.sdf old mode 100755 new mode 100644 diff --git a/Docs/Book/images/similarity_map_rf.png b/Docs/Book/images/similarity_map_rf.png old mode 100755 new mode 100644 diff --git a/Docs/Code/Chem/FragmentCatalogs.html b/Docs/Code/Chem/FragmentCatalogs.html old mode 100755 new mode 100644 diff --git a/Docs/RD.css b/Docs/RD.css old mode 100755 new mode 100644 diff --git a/External/AvalonTools/AvalonTools.h b/External/AvalonTools/AvalonTools.h old mode 100755 new mode 100644 diff --git a/External/AvalonTools/CMakeLists.txt b/External/AvalonTools/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/External/AvalonTools/Wrap/CMakeLists.txt b/External/AvalonTools/Wrap/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/External/INCHI-API/Wrap/CMakeLists.txt b/External/INCHI-API/Wrap/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/External/YAeHMOP/Wrap/CMakeLists.txt b/External/YAeHMOP/Wrap/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/Web/RDExtras/.htaccess b/Web/RDExtras/.htaccess old mode 100755 new mode 100644 diff --git a/rdkit/Chem/AtomPairs/test_data/mols1000.aps.pkl.gz b/rdkit/Chem/AtomPairs/test_data/mols1000.aps.pkl.gz old mode 100755 new mode 100644 diff --git a/rdkit/Chem/AtomPairs/test_data/mols1000.pkl.gz b/rdkit/Chem/AtomPairs/test_data/mols1000.pkl.gz old mode 100755 new mode 100644 diff --git a/rdkit/Chem/AtomPairs/test_data/mols1000.tts.pkl.gz b/rdkit/Chem/AtomPairs/test_data/mols1000.tts.pkl.gz old mode 100755 new mode 100644 diff --git a/rdkit/Chem/SimpleEnum/test_data/azide_reaction.rxn b/rdkit/Chem/SimpleEnum/test_data/azide_reaction.rxn old mode 100755 new mode 100644 diff --git a/rdkit/Chem/SimpleEnum/test_data/bad_value1.rxn b/rdkit/Chem/SimpleEnum/test_data/bad_value1.rxn old mode 100755 new mode 100644 diff --git a/rdkit/Chem/SimpleEnum/test_data/bad_value2.rxn b/rdkit/Chem/SimpleEnum/test_data/bad_value2.rxn old mode 100755 new mode 100644 diff --git a/rdkit/Chem/SimpleEnum/test_data/bad_value3.rxn b/rdkit/Chem/SimpleEnum/test_data/bad_value3.rxn old mode 100755 new mode 100644 diff --git a/rdkit/Chem/SimpleEnum/test_data/boronic1.rxn b/rdkit/Chem/SimpleEnum/test_data/boronic1.rxn old mode 100755 new mode 100644 diff --git a/rdkit/Chem/Subshape/test_data/5ht3_mol1.shp.pkl b/rdkit/Chem/Subshape/test_data/5ht3_mol1.shp.pkl old mode 100755 new mode 100644 diff --git a/rdkit/Chem/Subshape/test_data/5ht3_mol2.shp.pkl b/rdkit/Chem/Subshape/test_data/5ht3_mol2.shp.pkl old mode 100755 new mode 100644 diff --git a/rdkit/Chem/Subshape/test_data/5ht3ligs.sdf b/rdkit/Chem/Subshape/test_data/5ht3ligs.sdf old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/Block_regress.Lip.csv b/rdkit/Chem/test_data/Block_regress.Lip.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/Cp-.cdxml b/rdkit/Chem/test_data/Cp-.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/Crippen.csv b/rdkit/Chem/test_data/Crippen.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/Crippen_contribs_regress.pkl b/rdkit/Chem/test_data/Crippen_contribs_regress.pkl old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/Fe-multi-center.cdxml b/rdkit/Chem/test_data/Fe-multi-center.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/NCI_5K_TPSA.csv b/rdkit/Chem/test_data/NCI_5K_TPSA.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/NCI_aromat_regress.txt b/rdkit/Chem/test_data/NCI_aromat_regress.txt old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/NCI_regress.Lip.csv b/rdkit/Chem/test_data/NCI_regress.Lip.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/PP_descrs_regress.2.csv b/rdkit/Chem/test_data/PP_descrs_regress.2.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/PP_descrs_regress.VSA.2.csv b/rdkit/Chem/test_data/PP_descrs_regress.VSA.2.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/PP_descrs_regress.VSA.csv b/rdkit/Chem/test_data/PP_descrs_regress.VSA.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/PP_descrs_regress.csv b/rdkit/Chem/test_data/PP_descrs_regress.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/PP_descrs_regress.rest.2.csv b/rdkit/Chem/test_data/PP_descrs_regress.rest.2.csv old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/Ti-sandwich.cdxml b/rdkit/Chem/test_data/Ti-sandwich.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/anthracene.cdxml b/rdkit/Chem/test_data/anthracene.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/aromat_regress.txt b/rdkit/Chem/test_data/aromat_regress.txt old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/atom-query.cdxml b/rdkit/Chem/test_data/atom-query.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/benzene.cdxml b/rdkit/Chem/test_data/benzene.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/benzene.mol b/rdkit/Chem/test_data/benzene.mol old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/bond-query.cdxml b/rdkit/Chem/test_data/bond-query.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/cubane.cdxml b/rdkit/Chem/test_data/cubane.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/dative.cdxml b/rdkit/Chem/test_data/dative.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/dative.mol b/rdkit/Chem/test_data/dative.mol old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/ferrocene.cdxml b/rdkit/Chem/test_data/ferrocene.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/fused-fours.cdxml b/rdkit/Chem/test_data/fused-fours.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/lin.xml b/rdkit/Chem/test_data/lin.xml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/linear.cdxml b/rdkit/Chem/test_data/linear.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/linear.mol b/rdkit/Chem/test_data/linear.mol old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/monomer.mol b/rdkit/Chem/test_data/monomer.mol old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/multi-center.cdxml b/rdkit/Chem/test_data/multi-center.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/multi-ring.cdxml b/rdkit/Chem/test_data/multi-ring.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/napthalene.cdxml b/rdkit/Chem/test_data/napthalene.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/napthalene.mol b/rdkit/Chem/test_data/napthalene.mol old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/quilt.cdxml b/rdkit/Chem/test_data/quilt.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/quilt.sm.cdxml b/rdkit/Chem/test_data/quilt.sm.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/quinone.mol b/rdkit/Chem/test_data/quinone.mol old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/sandwich.cdxml b/rdkit/Chem/test_data/sandwich.cdxml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/simple_catalog.pkl b/rdkit/Chem/test_data/simple_catalog.pkl old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/t.xml b/rdkit/Chem/test_data/t.xml old mode 100755 new mode 100644 diff --git a/rdkit/Chem/test_data/tpsa_regr.csv b/rdkit/Chem/test_data/tpsa_regr.csv old mode 100755 new mode 100644 diff --git a/rdkit/DataStructs/test_data/pubchem_fps.dm.pkl b/rdkit/DataStructs/test_data/pubchem_fps.dm.pkl old mode 100755 new mode 100644 diff --git a/rdkit/DataStructs/test_data/pubchem_fps.pkl b/rdkit/DataStructs/test_data/pubchem_fps.pkl old mode 100755 new mode 100644 diff --git a/rdkit/Dbase/test_data/dbtest.csv b/rdkit/Dbase/test_data/dbtest.csv old mode 100755 new mode 100644 diff --git a/rdkit/Dbase/test_data/dbtest.nulls.csv b/rdkit/Dbase/test_data/dbtest.nulls.csv old mode 100755 new mode 100644 diff --git a/rdkit/Dbase/test_data/dbtest.nulls.xls b/rdkit/Dbase/test_data/dbtest.nulls.xls old mode 100755 new mode 100644 diff --git a/rdkit/Dbase/test_data/dbtest.xls b/rdkit/Dbase/test_data/dbtest.xls old mode 100755 new mode 100644 diff --git a/rdkit/Dbase/test_data/rdtest.sql b/rdkit/Dbase/test_data/rdtest.sql old mode 100755 new mode 100644 diff --git a/rdkit/ML/Cluster/test_data/ferro.UPGMA.pkl b/rdkit/ML/Cluster/test_data/ferro.UPGMA.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Cluster/test_data/ferro.dat.pkl b/rdkit/ML/Cluster/test_data/ferro.dat.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Cluster/test_data/struct.UPGMA.pkl b/rdkit/ML/Cluster/test_data/struct.UPGMA.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Cluster/test_data/struct.Wards.pkl b/rdkit/ML/Cluster/test_data/struct.Wards.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Cluster/test_data/struct.dat.pkl b/rdkit/ML/Cluster/test_data/struct.dat.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Cluster/test_data/struct2.dat.pkl b/rdkit/ML/Cluster/test_data/struct2.dat.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.both.pkl b/rdkit/ML/Composite/test_data/composite_base.both.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.net.pkl b/rdkit/ML/Composite/test_data/composite_base.net.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.neural.pkl b/rdkit/ML/Composite/test_data/composite_base.neural.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.others.both.pkl b/rdkit/ML/Composite/test_data/composite_base.others.both.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.others.net.pkl b/rdkit/ML/Composite/test_data/composite_base.others.net.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.others.neural.pkl b/rdkit/ML/Composite/test_data/composite_base.others.neural.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.others.pkl b/rdkit/ML/Composite/test_data/composite_base.others.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.pkl b/rdkit/ML/Composite/test_data/composite_base.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.unitnet.pkl b/rdkit/ML/Composite/test_data/composite_base.unitnet.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_base.unittree.pkl b/rdkit/ML/Composite/test_data/composite_base.unittree.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/composite_plus_neural.pkl b/rdkit/ML/Composite/test_data/composite_plus_neural.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/ferro.others.pkl b/rdkit/ML/Composite/test_data/ferro.others.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/ferro.others.txt b/rdkit/ML/Composite/test_data/ferro.others.txt old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/ferro.pkl b/rdkit/ML/Composite/test_data/ferro.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Composite/test_data/ferro.txt b/rdkit/ML/Composite/test_data/ferro.txt old mode 100755 new mode 100644 diff --git a/rdkit/ML/Data/test_data/test.dat b/rdkit/ML/Data/test_data/test.dat old mode 100755 new mode 100644 diff --git a/rdkit/ML/Data/test_data/test.dat.pkl b/rdkit/ML/Data/test_data/test.dat.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Data/test_data/test.qdat b/rdkit/ML/Data/test_data/test.qdat old mode 100755 new mode 100644 diff --git a/rdkit/ML/Data/test_data/test.qdat.pkl b/rdkit/ML/Data/test_data/test.qdat.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/BasicTree.pkl b/rdkit/ML/DecTree/test_data/BasicTree.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/CmpTree1.pkl b/rdkit/ML/DecTree/test_data/CmpTree1.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/CmpTree2.pkl b/rdkit/ML/DecTree/test_data/CmpTree2.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/MultiTree.pkl b/rdkit/ML/DecTree/test_data/MultiTree.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/MultiTreeRes.pkl b/rdkit/ML/DecTree/test_data/MultiTreeRes.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/QuantTree1.pkl b/rdkit/ML/DecTree/test_data/QuantTree1.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/QuantTree2.pkl b/rdkit/ML/DecTree/test_data/QuantTree2.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/XValTree.pkl b/rdkit/ML/DecTree/test_data/XValTree.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/DecTree/test_data/foo.pdf b/rdkit/ML/DecTree/test_data/foo.pdf old mode 100755 new mode 100644 diff --git a/rdkit/ML/Descriptors/test_data/ferro.dsc b/rdkit/ML/Descriptors/test_data/ferro.dsc old mode 100755 new mode 100644 diff --git a/rdkit/ML/Descriptors/test_data/molcalc.dsc b/rdkit/ML/Descriptors/test_data/molcalc.dsc old mode 100755 new mode 100644 diff --git a/rdkit/ML/InfoTheory/test_data/combiRank.out b/rdkit/ML/InfoTheory/test_data/combiRank.out old mode 100755 new mode 100644 diff --git a/rdkit/ML/InfoTheory/test_data/combiRankChi.out b/rdkit/ML/InfoTheory/test_data/combiRankChi.out old mode 100755 new mode 100644 diff --git a/rdkit/ML/KNN/test_data/random_pts.csv b/rdkit/ML/KNN/test_data/random_pts.csv old mode 100755 new mode 100644 diff --git a/rdkit/ML/KNN/test_data/sample_pts.csv b/rdkit/ML/KNN/test_data/sample_pts.csv old mode 100755 new mode 100644 diff --git a/rdkit/ML/ModelPackage/test_data/Jan9_build3_calc.dsc b/rdkit/ML/ModelPackage/test_data/Jan9_build3_calc.dsc old mode 100755 new mode 100644 diff --git a/rdkit/ML/ModelPackage/test_data/Jan9_build3_model.pkl b/rdkit/ML/ModelPackage/test_data/Jan9_build3_model.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/ModelPackage/test_data/Jan9_build3_pkg.pkl b/rdkit/ML/ModelPackage/test_data/Jan9_build3_pkg.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/Neural/architecture.txt b/rdkit/ML/Neural/architecture.txt old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_auto_10_3.pkl b/rdkit/ML/test_data/ferromag_auto_10_3.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_filt_10_3.pkl b/rdkit/ML/test_data/ferromag_filt_10_3.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_quant_10.pkl b/rdkit/ML/test_data/ferromag_quant_10.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_quant_10_3.pkl b/rdkit/ML/test_data/ferromag_quant_10_3.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_quant_10_3_lessgreedy.pkl b/rdkit/ML/test_data/ferromag_quant_10_3_lessgreedy.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_quant_50_3.pkl b/rdkit/ML/test_data/ferromag_quant_50_3.pkl old mode 100755 new mode 100644 diff --git a/rdkit/ML/test_data/ferromag_shuffle_10_3.pkl b/rdkit/ML/test_data/ferromag_shuffle_10_3.pkl old mode 100755 new mode 100644 diff --git a/rdkit/VLib/NodeLib/test_data/NCI_aids.10.dupes.sdf b/rdkit/VLib/NodeLib/test_data/NCI_aids.10.dupes.sdf old mode 100755 new mode 100644 diff --git a/rdkit/VLib/NodeLib/test_data/NCI_aids.10.sdf b/rdkit/VLib/NodeLib/test_data/NCI_aids.10.sdf old mode 100755 new mode 100644 diff --git a/rdkit/VLib/NodeLib/test_data/pgp_20.txt b/rdkit/VLib/NodeLib/test_data/pgp_20.txt old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-10.pbm b/rdkit/sping/PIL/pilfonts/courier-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-10.pil b/rdkit/sping/PIL/pilfonts/courier-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-12.pbm b/rdkit/sping/PIL/pilfonts/courier-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-12.pil b/rdkit/sping/PIL/pilfonts/courier-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-14.pbm b/rdkit/sping/PIL/pilfonts/courier-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-14.pil b/rdkit/sping/PIL/pilfonts/courier-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-18.pbm b/rdkit/sping/PIL/pilfonts/courier-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-18.pil b/rdkit/sping/PIL/pilfonts/courier-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-24.pbm b/rdkit/sping/PIL/pilfonts/courier-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-24.pil b/rdkit/sping/PIL/pilfonts/courier-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-8.pbm b/rdkit/sping/PIL/pilfonts/courier-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-8.pil b/rdkit/sping/PIL/pilfonts/courier-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-8.pil.1 b/rdkit/sping/PIL/pilfonts/courier-8.pil.1 old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm b/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-10.pil b/rdkit/sping/PIL/pilfonts/courier-bold-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm b/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-12.pil b/rdkit/sping/PIL/pilfonts/courier-bold-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm b/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-14.pil b/rdkit/sping/PIL/pilfonts/courier-bold-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm b/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-18.pil b/rdkit/sping/PIL/pilfonts/courier-bold-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm b/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-24.pil b/rdkit/sping/PIL/pilfonts/courier-bold-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm b/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/courier-bold-8.pil b/rdkit/sping/PIL/pilfonts/courier-bold-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-10.pbm b/rdkit/sping/PIL/pilfonts/helvetica-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-10.pil b/rdkit/sping/PIL/pilfonts/helvetica-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-12.pbm b/rdkit/sping/PIL/pilfonts/helvetica-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-12.pil b/rdkit/sping/PIL/pilfonts/helvetica-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-14.pbm b/rdkit/sping/PIL/pilfonts/helvetica-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-14.pil b/rdkit/sping/PIL/pilfonts/helvetica-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-18.pbm b/rdkit/sping/PIL/pilfonts/helvetica-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-18.pil b/rdkit/sping/PIL/pilfonts/helvetica-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-24.pbm b/rdkit/sping/PIL/pilfonts/helvetica-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-24.pil b/rdkit/sping/PIL/pilfonts/helvetica-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-8.pbm b/rdkit/sping/PIL/pilfonts/helvetica-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-8.pil b/rdkit/sping/PIL/pilfonts/helvetica-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm b/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil b/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm b/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil b/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm b/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil b/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm b/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil b/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm b/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil b/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm b/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil b/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/metrics.dat b/rdkit/sping/PIL/pilfonts/metrics.dat old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-10.pbm b/rdkit/sping/PIL/pilfonts/symbol-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-10.pil b/rdkit/sping/PIL/pilfonts/symbol-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-12.pbm b/rdkit/sping/PIL/pilfonts/symbol-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-12.pil b/rdkit/sping/PIL/pilfonts/symbol-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-14.pbm b/rdkit/sping/PIL/pilfonts/symbol-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-14.pil b/rdkit/sping/PIL/pilfonts/symbol-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-18.pbm b/rdkit/sping/PIL/pilfonts/symbol-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-18.pil b/rdkit/sping/PIL/pilfonts/symbol-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-24.pbm b/rdkit/sping/PIL/pilfonts/symbol-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-24.pil b/rdkit/sping/PIL/pilfonts/symbol-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-8.pbm b/rdkit/sping/PIL/pilfonts/symbol-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/symbol-8.pil b/rdkit/sping/PIL/pilfonts/symbol-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-10.pbm b/rdkit/sping/PIL/pilfonts/times-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-10.pil b/rdkit/sping/PIL/pilfonts/times-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-12.pbm b/rdkit/sping/PIL/pilfonts/times-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-12.pil b/rdkit/sping/PIL/pilfonts/times-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-14.pbm b/rdkit/sping/PIL/pilfonts/times-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-14.pil b/rdkit/sping/PIL/pilfonts/times-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-18.pbm b/rdkit/sping/PIL/pilfonts/times-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-18.pil b/rdkit/sping/PIL/pilfonts/times-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-24.pbm b/rdkit/sping/PIL/pilfonts/times-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-24.pil b/rdkit/sping/PIL/pilfonts/times-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-8.pbm b/rdkit/sping/PIL/pilfonts/times-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-8.pil b/rdkit/sping/PIL/pilfonts/times-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-10.pbm b/rdkit/sping/PIL/pilfonts/times-bold-10.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-10.pil b/rdkit/sping/PIL/pilfonts/times-bold-10.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-12.pbm b/rdkit/sping/PIL/pilfonts/times-bold-12.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-12.pil b/rdkit/sping/PIL/pilfonts/times-bold-12.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-14.pbm b/rdkit/sping/PIL/pilfonts/times-bold-14.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-14.pil b/rdkit/sping/PIL/pilfonts/times-bold-14.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-18.pbm b/rdkit/sping/PIL/pilfonts/times-bold-18.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-18.pil b/rdkit/sping/PIL/pilfonts/times-bold-18.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-24.pbm b/rdkit/sping/PIL/pilfonts/times-bold-24.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-24.pil b/rdkit/sping/PIL/pilfonts/times-bold-24.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-8.pbm b/rdkit/sping/PIL/pilfonts/times-bold-8.pbm old mode 100755 new mode 100644 diff --git a/rdkit/sping/PIL/pilfonts/times-bold-8.pil b/rdkit/sping/PIL/pilfonts/times-bold-8.pil old mode 100755 new mode 100644 diff --git a/rdkit/sping/README b/rdkit/sping/README old mode 100755 new mode 100644 diff --git a/rdkit/sping/patches/Imaging-1.1-fixplugin-path b/rdkit/sping/patches/Imaging-1.1-fixplugin-path old mode 100755 new mode 100644 diff --git a/rdkit/sping/patches/Imaging-1.1.1.diff b/rdkit/sping/patches/Imaging-1.1.1.diff old mode 100755 new mode 100644 diff --git a/rdkit/utils/12h.gif b/rdkit/utils/12h.gif old mode 100755 new mode 100644 diff --git a/rdkit/utils/retest.txt b/rdkit/utils/retest.txt old mode 100755 new mode 100644 diff --git a/rdkit/utils/test1.gif b/rdkit/utils/test1.gif old mode 100755 new mode 100644 diff --git a/rdkit/utils/test2.gif b/rdkit/utils/test2.gif old mode 100755 new mode 100644 diff --git a/rdkit/utils/test3.gif b/rdkit/utils/test3.gif old mode 100755 new mode 100644