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batch dos2unix conversion; untabify

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This commit is contained in:
Greg Landrum
2007-03-14 04:46:26 +00:00
parent bc0958a6ad
commit a73711e854
20 changed files with 1014 additions and 1014 deletions
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42
Code/DataStructs/BitOps.cpp
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@@ -143,9 +143,9 @@ bool AllProbeBitsMatch(const T1 &probe,const std::string &pkl){
// if(probe.GetBit(i)){
for(std::vector<int>::const_iterator i=obl.begin();i!=obl.end();i++){
while(currBit<*i && nOn>0){
if(format==2) currBit++;
currBit=getBitId(text,format,size,currBit);
nOn--;
if(format==2) currBit++;
currBit=getBitId(text,format,size,currBit);
nOn--;
}
if(currBit!=*i) return false;
//}
@@ -164,14 +164,14 @@ template bool AllProbeBitsMatch(const ExplicitBitVect& bv1,const std::string &pk
template <typename T1, typename T2>
int
NumOnBitsInCommon(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
return OnBitsInCommon(bv1,bv2).size();
}
int
NumOnBitsInCommon(const ExplicitBitVect& bv1,
const ExplicitBitVect& bv2)
const ExplicitBitVect& bv2)
{
//std::cout << "nobic" << std::endl;
int res = 0;
@@ -201,7 +201,7 @@ NumOnBitsInCommon(const ExplicitBitVect& bv1,
template <typename T1, typename T2>
const double
TanimotoSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -216,7 +216,7 @@ TanimotoSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
CosineSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -234,7 +234,7 @@ CosineSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
KulczynskiSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -253,7 +253,7 @@ KulczynskiSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
DiceSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -271,7 +271,7 @@ DiceSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
SokalSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -285,7 +285,7 @@ SokalSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
McConnaugheySimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -315,7 +315,7 @@ inline T tmax(T v1,T v2) {
template <typename T1, typename T2>
const double
AsymmetricSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -333,7 +333,7 @@ AsymmetricSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
BraunBlanquetSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -351,7 +351,7 @@ BraunBlanquetSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
RusselSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -377,7 +377,7 @@ RusselSimilarity(const T1& bv1,
template <typename T1, typename T2>
const double
OnBitSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -408,7 +408,7 @@ OnBitSimilarity(const T1& bv1,
template <typename T1, typename T2>
const int
NumBitsInCommon(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -434,7 +434,7 @@ NumBitsInCommon(const T1& bv1,
template <typename T1, typename T2>
const double
AllBitSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -462,7 +462,7 @@ AllBitSimilarity(const T1& bv1,
template <typename T1, typename T2>
IntVect
OnBitsInCommon(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -488,7 +488,7 @@ OnBitsInCommon(const T1& bv1,
template <typename T1, typename T2>
IntVect
OffBitsInCommon(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -525,7 +525,7 @@ OffBitsInCommon(const T1& bv1,
template <typename T1, typename T2>
DoubleVect
OnBitProjSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");
@@ -566,7 +566,7 @@ OnBitProjSimilarity(const T1& bv1,
template <typename T1, typename T2>
DoubleVect
OffBitProjSimilarity(const T1& bv1,
const T2& bv2)
const T2& bv2)
{
if(bv1.GetNumBits()!=bv2.GetNumBits())
throw ValueErrorException("BitVects must be same length");