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Adds gzstream stream, exposes to swig (#2314)

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* Move RDBoostStreams to RDStreams

* RDBoostStreams->RDStreams

* RDBoostStreams->RDStreams

* Wrap SWIG (with Java test)

* Fix missing declaration

* Use the file that already exists

* Revert to original version

* Revert to CXSMiles version

* Update boost version

* Remove redundant code

* Add zlib

* check for win32

* FileParsers now builds static on windows
This commit is contained in:
Brian Kelley
2019-03-18 00:32:42 -04:00
committed by Greg Landrum
parent 48c9532c6f
commit d2f716a2e4
13 changed files with 202 additions and 50 deletions
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74
Code/JavaWrappers/Streams.i Normal file
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/*
* Copyright (c) 2019, Novartis Institutes for BioMedical Research Inc.
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are
* met:
*
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
* * Neither the name of Novartis Institutes for BioMedical Research Inc.
* nor the names of its contributors may be used to endorse or promote
* products derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
* OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
%include "std_string.i"
%{
#include <../RDStreams/streams.h>
#include <sstream>
%}
// We just need to pass the pointers around here
%nodefaultctor istream;
%nodefaultdtor istream;
%nodefaultctor filtering_istream;
%nodefaultdtor filtering_istream;
namespace std {
class istream;
}
%extend RDKit::gzstream {
std::istream* _GetStream() { return (std::istream*)$self; }
std::string Dump() {
std::ostringstream stream;
std::copy(std::istreambuf_iterator<char>(*$self),
std::istreambuf_iterator<char>(),
std::ostreambuf_iterator<char>(stream));
return stream.str();
}
}
%typemap(javacode) RDKit::gzstream %{
private SWIGTYPE_p_std__istream streamRef;
public SWIGTYPE_p_std__istream GetStream() {
if (streamRef == null)
streamRef = _GetStream();
return streamRef;
}
%}
%include <../RDStreams/streams.h>