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first pass, using google style

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This commit is contained in:
Greg Landrum
2015-11-14 14:58:11 +01:00
parent 80bb809b31
commit e08e0d16d8
619 changed files with 138877 additions and 133381 deletions
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96
Code/DataStructs/DiscreteDistMat.cpp
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@@ -14,62 +14,63 @@
#include "DatastructsException.h"
namespace RDKit {
void _fillDistMat(unsigned int dmat[], unsigned int nBits) {
unsigned int i,j, a, b, ta, tb, dist;
int temp;
unsigned int mask = ((1<<nBits) -1);
for (i = 0; i < 256; ++i) {
for (j = 0; j < 256; ++j) {
dist = 0;
a = i;
b = j;
while (a || b) {
ta = a&mask;
tb = b&mask;
temp = ta-tb;
if (temp > 0) {
dist += temp;
} else {
dist -= temp;
}
a >>= nBits;
b >>= nBits;
void _fillDistMat(unsigned int dmat[], unsigned int nBits) {
unsigned int i, j, a, b, ta, tb, dist;
int temp;
unsigned int mask = ((1 << nBits) - 1);
for (i = 0; i < 256; ++i) {
for (j = 0; j < 256; ++j) {
dist = 0;
a = i;
b = j;
while (a || b) {
ta = a & mask;
tb = b & mask;
temp = ta - tb;
if (temp > 0) {
dist += temp;
} else {
dist -= temp;
}
dmat[i*256 + j] = dist;
a >>= nBits;
b >>= nBits;
}
dmat[i * 256 + j] = dist;
}
}
}
DiscreteDistMat::DiscreteDistMat() {
// fill in the distance matrix table
DiscreteDistMat::DiscreteDistMat() {
// fill in the distance matrix table
// one bit per value table
_fillDistMat(d_oneBitTab, 1);
// one bit per value table
_fillDistMat(d_oneBitTab, 1);
// two bits per value table
_fillDistMat(d_twoBitTab, 2);
// two bits per value table
_fillDistMat(d_twoBitTab, 2);
// four bits per value table
_fillDistMat(d_fourBitTab, 4);
}
// four bits per value table
_fillDistMat(d_fourBitTab, 4);
}
unsigned int DiscreteDistMat::getDist(unsigned char v1,
unsigned char v2,
DiscreteValueVect::DiscreteValueType type) {
unsigned int res=0;
int temp;
unsigned int id = static_cast<unsigned int>(v1)*256 + static_cast<unsigned int>(v2);
switch(type) {
case DiscreteValueVect::ONEBITVALUE :
unsigned int DiscreteDistMat::getDist(
unsigned char v1, unsigned char v2,
DiscreteValueVect::DiscreteValueType type) {
unsigned int res = 0;
int temp;
unsigned int id =
static_cast<unsigned int>(v1) * 256 + static_cast<unsigned int>(v2);
switch (type) {
case DiscreteValueVect::ONEBITVALUE:
res = d_oneBitTab[id];
break;
case DiscreteValueVect::TWOBITVALUE :
case DiscreteValueVect::TWOBITVALUE:
res = d_twoBitTab[id];
break;
case DiscreteValueVect::FOURBITVALUE :
case DiscreteValueVect::FOURBITVALUE:
res = d_fourBitTab[id];
break;
case DiscreteValueVect::EIGHTBITVALUE :
case DiscreteValueVect::EIGHTBITVALUE:
temp = static_cast<unsigned int>(v1) - static_cast<unsigned int>(v2);
if (temp < 0) {
res -= temp;
@@ -80,13 +81,10 @@ namespace RDKit {
default:
// ummm.. we shouldn't have come here
throw DatastructsException("We shouldn't be here");
}
return res;
}
return res;
}
static DiscreteDistMat discreteDMat;
DiscreteDistMat *getDiscreteDistMat() {
return &discreteDMat;
}
}
static DiscreteDistMat discreteDMat;
DiscreteDistMat *getDiscreteDistMat() { return &discreteDMat; }
}