From f3fbef45c58751a633fea2b60d1fc28c26dafbfb Mon Sep 17 00:00:00 2001 From: Greg Landrum Date: Sun, 26 Sep 2010 17:04:37 +0000 Subject: [PATCH] update copyright statements --- Code/Catalogs/Catalog.cpp | 4 ++++ Code/Catalogs/Catalog.h | 4 ++++ Code/Catalogs/CatalogEntry.cpp | 4 ++++ Code/Catalogs/CatalogEntry.h | 4 ++++ Code/Catalogs/CatalogParams.cpp | 4 ++++ Code/Catalogs/CatalogParams.h | 4 ++++ Code/ChemicalFeatures/ChemicalFeature.h | 4 ++++ Code/ChemicalFeatures/FreeChemicalFeature.cpp | 4 ++++ Code/ChemicalFeatures/FreeChemicalFeature.h | 4 ++++ Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp | 4 ++++ Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp | 5 ++++- Code/ChemicalFeatures/testChemicalFeatures.cpp | 4 ++++ Code/DataManip/MetricMatrixCalc/MetricFuncs.h | 4 ++++ Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h | 4 ++++ .../DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp | 4 ++++ Code/DataManip/MetricMatrixCalc/testMatCalc.cpp | 4 ++++ Code/DataStructs/BitOps.cpp | 4 ++++ Code/DataStructs/BitOps.h | 4 ++++ Code/DataStructs/BitVect.cpp | 4 ++++ Code/DataStructs/BitVect.h | 4 ++++ Code/DataStructs/BitVectUtils.h | 4 ++++ Code/DataStructs/BitVects.h | 4 ++++ Code/DataStructs/DatastructsException.h | 4 ++++ Code/DataStructs/DiscreteDistMat.cpp | 4 ++++ Code/DataStructs/DiscreteDistMat.h | 4 ++++ Code/DataStructs/DiscreteValueVect.cpp | 4 ++++ Code/DataStructs/DiscreteValueVect.h | 4 ++++ Code/DataStructs/ExplicitBitVect.cpp | 4 ++++ Code/DataStructs/ExplicitBitVect.h | 4 ++++ Code/DataStructs/SparseBitVect.cpp | 4 ++++ Code/DataStructs/SparseBitVect.h | 4 ++++ Code/DataStructs/SparseIntVect.h | 4 ++++ Code/DataStructs/Utils.cpp | 4 ++++ Code/DataStructs/Wrap/DataStructs.cpp | 4 ++++ Code/DataStructs/Wrap/DataStructs.h | 4 ++++ Code/DataStructs/Wrap/DiscreteValueVect.cpp | 4 ++++ Code/DataStructs/Wrap/SparseIntVect.cpp | 4 ++++ Code/DataStructs/Wrap/wrap_BitOps.cpp | 4 ++++ Code/DataStructs/Wrap/wrap_ExplicitBV.cpp | 4 ++++ Code/DataStructs/Wrap/wrap_SparseBV.cpp | 4 ++++ Code/DataStructs/Wrap/wrap_Utils.cpp | 4 ++++ Code/DataStructs/Wrap/wrap_helpers.h | 4 ++++ Code/DataStructs/base64.cpp | 4 ++++ Code/DataStructs/base64.h | 4 ++++ Code/DataStructs/testDatastructs.cpp | 4 ++++ Code/Demos/RDKit/Draw/MolDrawing.h | 6 +++++- Code/Demos/RDKit/Draw/demo.cpp | 5 ++++- Code/Demos/RDKit/GettingStarted/sample.cpp | 6 +++++- Code/Demos/RDKit/MPI/rdkexample1.cpp | 6 +++++- Code/Demos/RDKit/MPI/rdkexample2.cpp | 6 +++++- Code/Demos/SWIG/RDKFuncs.cpp | 6 +++++- Code/Demos/SWIG/RDKFuncs.h | 6 +++++- Code/Demos/sqlite/rdk_funcs.cpp | 4 ++++ Code/DistGeom/BoundsMatrix.h | 7 +++++-- Code/DistGeom/ChiralSet.h | 6 +++++- Code/DistGeom/DistGeomUtils.cpp | 6 +++++- Code/DistGeom/DistGeomUtils.h | 6 +++++- Code/DistGeom/DistViolationContrib.cpp | 6 +++++- Code/DistGeom/DistViolationContrib.h | 6 +++++- Code/DistGeom/TriangleSmooth.cpp | 6 +++++- Code/DistGeom/TriangleSmooth.h | 6 +++++- Code/DistGeom/Wrap/DistGeom.cpp | 6 +++++- Code/DistGeom/testDistGeom.cpp | 6 +++++- Code/Features/Feature.cpp | 6 +++++- Code/Features/Feature.h | 6 +++++- Code/Features/testFeatures.cpp | 6 +++++- Code/ForceField/Contrib.h | 6 +++++- Code/ForceField/ForceField.cpp | 6 +++++- Code/ForceField/ForceField.h | 6 +++++- Code/ForceField/UFF/AngleBend.cpp | 6 +++++- Code/ForceField/UFF/AngleBend.h | 6 +++++- Code/ForceField/UFF/BondStretch.cpp | 6 +++++- Code/ForceField/UFF/BondStretch.h | 6 +++++- Code/ForceField/UFF/Contribs.h | 6 +++++- Code/ForceField/UFF/DistanceConstraint.cpp | 6 +++++- Code/ForceField/UFF/DistanceConstraint.h | 6 +++++- Code/ForceField/UFF/Nonbonded.cpp | 6 +++++- Code/ForceField/UFF/Nonbonded.h | 6 +++++- Code/ForceField/UFF/Params.cpp | 6 +++++- Code/ForceField/UFF/Params.h | 6 +++++- Code/ForceField/UFF/TorsionAngle.cpp | 6 +++++- Code/ForceField/UFF/TorsionAngle.h | 6 +++++- Code/ForceField/Wrap/ForceField.cpp | 6 +++++- Code/ForceField/Wrap/PyForceField.h | 6 +++++- Code/ForceField/testForceField.cpp | 6 +++++- Code/Geometry/Grid3D.h | 6 +++++- Code/Geometry/GridUtils.cpp | 6 +++++- Code/Geometry/GridUtils.h | 6 +++++- Code/Geometry/Transform.h | 6 +++++- Code/Geometry/Transform2D.cpp | 6 +++++- Code/Geometry/Transform2D.h | 6 +++++- Code/Geometry/Transform3D.cpp | 6 +++++- Code/Geometry/Transform3D.h | 6 +++++- Code/Geometry/UniformGrid3D.cpp | 6 +++++- Code/Geometry/UniformGrid3D.h | 6 +++++- Code/Geometry/Utils.h | 6 +++++- Code/Geometry/Wrap/Point.cpp | 6 +++++- Code/Geometry/Wrap/UniformGrid3D.cpp | 6 +++++- Code/Geometry/Wrap/rdGeometry.cpp | 6 +++++- Code/Geometry/point.cpp | 6 +++++- Code/Geometry/point.h | 6 +++++- Code/Geometry/testGrid.cpp | 6 +++++- Code/Geometry/testTransforms.cpp | 6 +++++- Code/GraphMol/AddHs.cpp | 6 +++++- Code/GraphMol/Aromaticity.cpp | 6 +++++- Code/GraphMol/Atom.cpp | 6 +++++- Code/GraphMol/Atom.h | 6 +++++- Code/GraphMol/AtomIterators.cpp | 6 +++++- Code/GraphMol/AtomIterators.h | 6 +++++- Code/GraphMol/Basement/FeatTrees/FeatTree.cpp | 6 +++++- Code/GraphMol/Basement/FeatTrees/FeatTree.h | 6 +++++- Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.cpp | 6 +++++- Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.h | 6 +++++- Code/GraphMol/Basement/FeatTrees/testFeatTrees.cpp | 6 +++++- Code/GraphMol/Bond.cpp | 6 +++++- Code/GraphMol/Bond.h | 6 +++++- Code/GraphMol/BondIterators.cpp | 6 +++++- Code/GraphMol/BondIterators.h | 6 +++++- Code/GraphMol/Canon.cpp | 6 +++++- Code/GraphMol/Canon.h | 6 +++++- Code/GraphMol/ChemReactions/ReactionPickler.cpp | 6 +++++- Code/GraphMol/ChemReactions/ReactionPickler.h | 6 +++++- Code/GraphMol/ChemTransforms/ChemTransforms.cpp | 6 +++++- Code/GraphMol/ChemTransforms/ChemTransforms.h | 6 +++++- Code/GraphMol/ChemTransforms/testChemTransforms.cpp | 6 +++++- Code/GraphMol/Chirality.cpp | 6 +++++- Code/GraphMol/Chirality.h | 6 +++++- Code/GraphMol/Conformer.cpp | 6 +++++- Code/GraphMol/Conformer.h | 6 +++++- Code/GraphMol/ConjugHybrid.cpp | 6 +++++- Code/GraphMol/Depictor/Basement/Depictor.cpp | 6 +++++- Code/GraphMol/Depictor/Basement/Depictor.h | 6 +++++- Code/GraphMol/Depictor/Basement/DepictorDLL.cpp | 6 +++++- Code/GraphMol/Depictor/Basement/depictTest.cpp | 6 +++++- Code/GraphMol/Depictor/DepictUtils.cpp | 6 +++++- Code/GraphMol/Depictor/DepictUtils.h | 6 +++++- Code/GraphMol/Depictor/EmbeddedFrag.cpp | 6 +++++- Code/GraphMol/Depictor/EmbeddedFrag.h | 6 +++++- Code/GraphMol/Depictor/RDDepictor.cpp | 6 +++++- Code/GraphMol/Depictor/RDDepictor.h | 6 +++++- Code/GraphMol/Depictor/Wrap/rdDepictor.cpp | 6 +++++- Code/GraphMol/Depictor/testDepictor.cpp | 6 +++++- Code/GraphMol/Descriptors/Crippen.cpp | 6 +++++- Code/GraphMol/Descriptors/Crippen.h | 6 +++++- Code/GraphMol/Descriptors/MolDescriptors.cpp | 6 +++++- Code/GraphMol/Descriptors/MolDescriptors.h | 6 +++++- Code/GraphMol/Descriptors/MolSurf.cpp | 6 +++++- Code/GraphMol/Descriptors/MolSurf.h | 6 +++++- Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp | 6 +++++- Code/GraphMol/Descriptors/test.cpp | 6 +++++- Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp | 6 +++++- Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h | 6 +++++- Code/GraphMol/DistGeomHelpers/Embedder.cpp | 6 +++++- Code/GraphMol/DistGeomHelpers/Embedder.h | 6 +++++- Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp | 6 +++++- Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp | 6 +++++- Code/GraphMol/FileParsers/FileParserUtils.h | 6 +++++- Code/GraphMol/FileParsers/FileParsers.h | 6 +++++- Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp | 6 +++++- Code/GraphMol/FileParsers/MolFileParser.cpp | 6 +++++- Code/GraphMol/FileParsers/MolFileStereochem.cpp | 6 +++++- Code/GraphMol/FileParsers/MolFileStereochem.h | 6 +++++- Code/GraphMol/FileParsers/MolFileWriter.cpp | 6 +++++- Code/GraphMol/FileParsers/MolSupplier.h | 6 +++++- Code/GraphMol/FileParsers/MolWriters.h | 6 +++++- Code/GraphMol/FileParsers/SDMolSupplier.cpp | 6 +++++- Code/GraphMol/FileParsers/SDWriter.cpp | 6 +++++- Code/GraphMol/FileParsers/SmilesMolSupplier.cpp | 6 +++++- Code/GraphMol/FileParsers/SmilesWriter.cpp | 6 +++++- Code/GraphMol/FileParsers/TDTMolSupplier.cpp | 6 +++++- Code/GraphMol/FileParsers/TDTWriter.cpp | 6 +++++- Code/GraphMol/FileParsers/TplFileParser.cpp | 6 +++++- Code/GraphMol/FileParsers/TplFileWriter.cpp | 6 +++++- Code/GraphMol/FileParsers/test1.cpp | 6 +++++- Code/GraphMol/FileParsers/testMolSupplier.cpp | 6 +++++- Code/GraphMol/FileParsers/testMolWriter.cpp | 6 +++++- Code/GraphMol/FileParsers/testTpls.cpp | 6 +++++- Code/GraphMol/FindRings.cpp | 6 +++++- Code/GraphMol/Fingerprints/AtomPairs.cpp | 6 +++++- Code/GraphMol/Fingerprints/AtomPairs.h | 6 +++++- Code/GraphMol/Fingerprints/Fingerprints.cpp | 6 +++++- Code/GraphMol/Fingerprints/Fingerprints.h | 6 +++++- Code/GraphMol/Fingerprints/test1.cpp | 6 +++++- Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp | 6 +++++- Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h | 6 +++++- Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp | 6 +++++- Code/GraphMol/ForceFieldHelpers/UFF/Builder.h | 6 +++++- Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp | 6 +++++- Code/GraphMol/ForceFieldHelpers/testHelpers.cpp | 6 +++++- Code/GraphMol/FragCatalog/FragCatGenerator.cpp | 6 +++++- Code/GraphMol/FragCatalog/FragCatGenerator.h | 6 +++++- Code/GraphMol/FragCatalog/FragCatParams.cpp | 6 +++++- Code/GraphMol/FragCatalog/FragCatParams.h | 6 +++++- Code/GraphMol/FragCatalog/FragCatalogEntry.cpp | 6 +++++- Code/GraphMol/FragCatalog/FragCatalogEntry.h | 6 +++++- Code/GraphMol/FragCatalog/FragCatalogUtils.cpp | 6 +++++- Code/GraphMol/FragCatalog/FragCatalogUtils.h | 6 +++++- Code/GraphMol/FragCatalog/FragFPGenerator.cpp | 6 +++++- Code/GraphMol/FragCatalog/FragFPGenerator.h | 6 +++++- Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp | 6 +++++- Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp | 6 +++++- Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp | 6 +++++- Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp | 6 +++++- Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp | 6 +++++- Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h | 6 +++++- Code/GraphMol/FragCatalog/test1.cpp | 6 +++++- Code/GraphMol/GraphMol.cpp | 6 +++++- Code/GraphMol/GraphMol.h | 6 +++++- Code/GraphMol/Kekulize.cpp | 6 +++++- Code/GraphMol/Matrices.cpp | 6 +++++- Code/GraphMol/MolAlign/AlignMolecules.cpp | 6 +++++- Code/GraphMol/MolAlign/AlignMolecules.h | 6 +++++- Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp | 6 +++++- Code/GraphMol/MolAlign/testMolAlign.cpp | 6 +++++- Code/GraphMol/MolCatalog/MolCatalogEntry.cpp | 6 +++++- Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h | 6 +++++- Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp | 6 +++++- Code/GraphMol/MolChemicalFeatures/FeatureParser.h | 6 +++++- Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp | 6 +++++- Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h | 6 +++++- .../GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp | 6 +++++- Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h | 6 +++++- .../MolChemicalFeatures/MolChemicalFeatureFactory.cpp | 6 +++++- .../MolChemicalFeatures/MolChemicalFeatureFactory.h | 6 +++++- .../MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp | 6 +++++- .../MolChemicalFeatures/Wrap/MolChemicalFeature.cpp | 6 +++++- .../MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp | 6 +++++- .../MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp | 6 +++++- Code/GraphMol/MolChemicalFeatures/testFeatures.cpp | 6 +++++- Code/GraphMol/MolDiscriminators.cpp | 6 +++++- Code/GraphMol/MolOps.cpp | 6 +++++- Code/GraphMol/MolOps.h | 6 +++++- Code/GraphMol/MolPickler.cpp | 6 +++++- Code/GraphMol/MolPickler.h | 6 +++++- Code/GraphMol/MolTransforms/MolTransforms.cpp | 6 +++++- Code/GraphMol/MolTransforms/MolTransforms.h | 6 +++++- Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp | 6 +++++- Code/GraphMol/MolTransforms/test1.cpp | 6 +++++- Code/GraphMol/PartialCharges/GasteigerCharges.cpp | 6 +++++- Code/GraphMol/PartialCharges/GasteigerCharges.h | 6 +++++- Code/GraphMol/PartialCharges/GasteigerParams.cpp | 6 +++++- Code/GraphMol/PartialCharges/GasteigerParams.h | 6 +++++- Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp | 6 +++++- Code/GraphMol/PeriodicTable.cpp | 6 +++++- Code/GraphMol/PeriodicTable.h | 6 +++++- Code/GraphMol/QueryAtom.cpp | 6 +++++- Code/GraphMol/QueryAtom.h | 6 +++++- Code/GraphMol/QueryBond.cpp | 6 +++++- Code/GraphMol/QueryBond.h | 6 +++++- Code/GraphMol/QueryOps.cpp | 6 +++++- Code/GraphMol/QueryOps.h | 6 +++++- Code/GraphMol/RDKitBase.h | 6 +++++- Code/GraphMol/RDKitQueries.h | 6 +++++- Code/GraphMol/ROMol.cpp | 6 +++++- Code/GraphMol/ROMol.h | 6 +++++- Code/GraphMol/RWMol.cpp | 6 +++++- Code/GraphMol/RWMol.h | 6 +++++- Code/GraphMol/RankAtoms.cpp | 6 +++++- Code/GraphMol/RankAtoms.h | 6 +++++- Code/GraphMol/RingInfo.cpp | 6 +++++- Code/GraphMol/RingInfo.h | 6 +++++- Code/GraphMol/Rings.h | 6 +++++- Code/GraphMol/SanitException.h | 6 +++++- Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp | 6 +++++- Code/GraphMol/ShapeHelpers/ShapeEncoder.h | 6 +++++- Code/GraphMol/ShapeHelpers/ShapeUtils.cpp | 6 +++++- Code/GraphMol/ShapeHelpers/ShapeUtils.h | 6 +++++- Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp | 6 +++++- Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp | 6 +++++- Code/GraphMol/SmilesParse/SmartsWrite.cpp | 6 +++++- Code/GraphMol/SmilesParse/SmartsWrite.h | 6 +++++- Code/GraphMol/SmilesParse/SmilesParse.cpp | 6 +++++- Code/GraphMol/SmilesParse/SmilesParse.h | 6 +++++- Code/GraphMol/SmilesParse/SmilesParseOps.cpp | 6 +++++- Code/GraphMol/SmilesParse/SmilesParseOps.h | 6 +++++- Code/GraphMol/SmilesParse/SmilesWrite.cpp | 6 +++++- Code/GraphMol/SmilesParse/SmilesWrite.h | 6 +++++- Code/GraphMol/SmilesParse/main.cpp | 6 +++++- Code/GraphMol/SmilesParse/primes.h | 6 +++++- Code/GraphMol/SmilesParse/smamain.cpp | 6 +++++- Code/GraphMol/SmilesParse/smatest.cpp | 6 +++++- Code/GraphMol/SmilesParse/test.cpp | 6 +++++- Code/GraphMol/Subgraphs/SubgraphUtils.cpp | 6 +++++- Code/GraphMol/Subgraphs/SubgraphUtils.h | 6 +++++- Code/GraphMol/Subgraphs/Subgraphs.cpp | 6 +++++- Code/GraphMol/Subgraphs/Subgraphs.h | 6 +++++- Code/GraphMol/Subgraphs/test1.cpp | 6 +++++- Code/GraphMol/Subgraphs/test2.cpp | 6 +++++- Code/GraphMol/Substruct/SubstructMatch.cpp | 6 +++++- Code/GraphMol/Substruct/SubstructMatch.h | 6 +++++- Code/GraphMol/Substruct/SubstructUtils.cpp | 6 +++++- Code/GraphMol/Substruct/SubstructUtils.h | 6 +++++- Code/GraphMol/Substruct/bench.cpp | 6 +++++- Code/GraphMol/Substruct/cmd_match.cpp | 6 +++++- Code/GraphMol/Substruct/test1.cpp | 6 +++++- Code/GraphMol/Wrap/Atom.cpp | 6 +++++- Code/GraphMol/Wrap/Bond.cpp | 6 +++++- Code/GraphMol/Wrap/CompressedSDMolSupplier.cpp | 6 +++++- Code/GraphMol/Wrap/Conformer.cpp | 6 +++++- Code/GraphMol/Wrap/EditableMol.cpp | 6 +++++- Code/GraphMol/Wrap/Mol.cpp | 6 +++++- Code/GraphMol/Wrap/MolOps.cpp | 6 +++++- Code/GraphMol/Wrap/MolSupplier.h | 6 +++++- Code/GraphMol/Wrap/Queries.cpp | 6 +++++- Code/GraphMol/Wrap/RingInfo.cpp | 6 +++++- Code/GraphMol/Wrap/SDMolSupplier.cpp | 6 +++++- Code/GraphMol/Wrap/SDWriter.cpp | 6 +++++- Code/GraphMol/Wrap/SmilesMolSupplier.cpp | 6 +++++- Code/GraphMol/Wrap/SmilesWriter.cpp | 6 +++++- Code/GraphMol/Wrap/TDTMolSupplier.cpp | 6 +++++- Code/GraphMol/Wrap/TDTWriter.cpp | 6 +++++- Code/GraphMol/Wrap/Table.cpp | 6 +++++- Code/GraphMol/Wrap/rdchem.cpp | 6 +++++- Code/GraphMol/Wrap/rdchem.h | 6 +++++- Code/GraphMol/Wrap/rdmolfiles.cpp | 6 +++++- Code/GraphMol/Wrap/rdmolfiles.h | 6 +++++- Code/GraphMol/Wrap/rdmolops.cpp | 6 +++++- Code/GraphMol/Wrap/rdmolops.h | 6 +++++- Code/GraphMol/atomic_data.cpp | 6 +++++- Code/GraphMol/atomic_data.h | 6 +++++- Code/GraphMol/bulktest.cpp | 6 +++++- Code/GraphMol/cptest.cpp | 6 +++++- Code/GraphMol/itertest.cpp | 6 +++++- Code/GraphMol/molopstest.cpp | 6 +++++- 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Code/SimDivPickers/HierarchicalClusterPicker.cpp | 6 +++++- Code/SimDivPickers/HierarchicalClusterPicker.h | 6 +++++- Code/SimDivPickers/MaxMinPicker.cpp | 6 +++++- Code/SimDivPickers/MaxMinPicker.h | 6 +++++- Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp | 6 +++++- Code/SimDivPickers/Wrap/MaxMinPicker.cpp | 6 +++++- Code/SimDivPickers/Wrap/rdSimDivPickers.cpp | 6 +++++- rdkit/Chem/AllChem.py | 6 +++++- rdkit/Chem/AtomPairs/Pairs.py | 6 +++++- rdkit/Chem/AtomPairs/Torsions.py | 6 +++++- rdkit/Chem/AtomPairs/UnitTestDescriptors.py | 6 +++++- rdkit/Chem/AtomPairs/Utils.py | 6 +++++- rdkit/Chem/AvailDescriptors.py | 6 +++++- rdkit/Chem/BuildFragmentCatalog.py | 6 +++++- rdkit/Chem/ChemUtils/BulkTester.py | 6 +++++- rdkit/Chem/ChemUtils/SDFToCSV.py | 6 +++++- rdkit/Chem/ChemicalFeatures.py | 6 +++++- rdkit/Chem/ChemicalForceFields.py | 6 +++++- rdkit/Chem/Crippen.py | 6 +++++- rdkit/Chem/DSViewer.py | 6 +++++- rdkit/Chem/Descriptors.py | 6 +++++- rdkit/Chem/Draw/DrawUtils.py | 6 +++++- rdkit/Chem/Draw/MolDrawing.py | 6 +++++- rdkit/Chem/Draw/aggCanvas.py | 6 +++++- rdkit/Chem/Draw/cairoCanvas.py | 6 +++++- rdkit/Chem/Draw/mplCanvas.py | 6 +++++- rdkit/Chem/Draw/spingCanvas.py | 6 +++++- rdkit/Chem/EState/AtomTypes.py | 6 +++++- rdkit/Chem/EState/EState.py | 6 +++++- rdkit/Chem/EState/EState_VSA.py | 6 +++++- rdkit/Chem/EState/Fingerprinter.py | 6 +++++- rdkit/Chem/EState/UnitTestEState.py | 6 +++++- rdkit/Chem/EState/UnitTestFingerprints.py | 6 +++++- rdkit/Chem/EState/UnitTestTypes.py | 6 +++++- rdkit/Chem/EState/UnitTestVSA.py | 6 +++++- rdkit/Chem/FastSDMolSupplier.py | 4 ++++ rdkit/Chem/FeatFinderCLI.py | 6 +++++- rdkit/Chem/FeatMaps/FeatMapParser.py | 6 +++++- rdkit/Chem/FeatMaps/FeatMapPoint.py | 6 +++++- rdkit/Chem/FeatMaps/FeatMapUtils.py | 6 +++++- rdkit/Chem/FeatMaps/FeatMaps.py | 6 +++++- rdkit/Chem/FeatMaps/UnitTestFeatMap.py | 6 +++++- rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py | 6 +++++- rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py | 6 +++++- rdkit/Chem/Features/FeatDirUtilsRD.py | 6 +++++- rdkit/Chem/Fingerprints/ClusterMols.py | 6 +++++- rdkit/Chem/Fingerprints/DbFpSupplier.py | 6 +++++- rdkit/Chem/Fingerprints/FingerprintMols.py | 6 +++++- rdkit/Chem/Fingerprints/MolSimilarity.py | 6 +++++- rdkit/Chem/Fingerprints/SimilarityScreener.py | 6 +++++- rdkit/Chem/Fingerprints/UnitTestFingerprints.py | 6 +++++- rdkit/Chem/FragmentCatalog.py | 6 +++++- rdkit/Chem/FragmentMatcher.py | 6 +++++- rdkit/Chem/Fragments.py | 6 +++++- rdkit/Chem/GraphDescriptors.py | 6 +++++- rdkit/Chem/Graphs.py | 6 +++++- rdkit/Chem/Lipinski.py | 6 +++++- rdkit/Chem/MACCSkeys.py | 6 +++++- rdkit/Chem/MolDb/Loader.py | 4 ++++ rdkit/Chem/MolDb/Loader_orig.py | 4 ++++ rdkit/Chem/MolDb/Loader_sa.py | 4 ++++ rdkit/Chem/MolSurf.py | 6 +++++- rdkit/Chem/PeriodicTable.py | 6 +++++- rdkit/Chem/Pharm2D/Generate.py | 6 +++++- rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py | 6 +++++- rdkit/Chem/Pharm2D/LazyGenerator.py | 6 +++++- rdkit/Chem/Pharm2D/Matcher.py | 6 +++++- rdkit/Chem/Pharm2D/SigFactory.py | 6 +++++- rdkit/Chem/Pharm2D/UnitTestGobbi.py | 6 +++++- rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py | 6 +++++- rdkit/Chem/Pharm2D/UnitTestMatcher.py | 6 +++++- rdkit/Chem/Pharm2D/UnitTestSignature.py | 6 +++++- rdkit/Chem/Pharm2D/UnitTestUtils.py | 6 +++++- rdkit/Chem/Pharm2D/Utils.py | 6 +++++- rdkit/Chem/Pharm3D/EmbedLib.py | 6 +++++- rdkit/Chem/Pharm3D/ExcludedVolume.py | 6 +++++- rdkit/Chem/Pharm3D/Pharmacophore.py | 6 +++++- rdkit/Chem/Pharm3D/UnitTestEmbed.py | 6 +++++- rdkit/Chem/Pharm3D/UnitTestPharmacophore.py | 6 +++++- rdkit/Chem/PyMol.py | 6 +++++- rdkit/Chem/Randomize.py | 6 +++++- rdkit/Chem/SATIS.py | 6 +++++- rdkit/Chem/ShowMols.py | 6 +++++- rdkit/Chem/Subshape/UnitTestSubshape.py | 6 +++++- rdkit/Chem/Suppliers/DbMolSupplier.py | 6 +++++- rdkit/Chem/Suppliers/MolSupplier.py | 6 +++++- rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py | 6 +++++- rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py | 6 +++++- rdkit/Chem/TemplateAlign.py | 6 +++++- rdkit/Chem/UnitTestArom.py | 6 +++++- rdkit/Chem/UnitTestCatalog.py | 6 +++++- rdkit/Chem/UnitTestChem.py | 6 +++++- rdkit/Chem/UnitTestChemAtom.py | 6 +++++- rdkit/Chem/UnitTestChemBond.py | 6 +++++- rdkit/Chem/UnitTestChemSmarts.py | 6 +++++- rdkit/Chem/UnitTestChemv2.py | 6 +++++- rdkit/Chem/UnitTestCrippen.py | 6 +++++- rdkit/Chem/UnitTestDescriptors.py | 6 +++++- rdkit/Chem/UnitTestFragmentDescriptors.py | 6 +++++- rdkit/Chem/UnitTestGraphDescriptors.2.py | 6 +++++- rdkit/Chem/UnitTestLipinski.py | 6 +++++- rdkit/Chem/UnitTestOldBugs.py | 6 +++++- rdkit/Chem/UnitTestSATIS.py | 6 +++++- rdkit/Chem/UnitTestSmiles.py | 6 +++++- rdkit/Chem/UnitTestSuppliers.py | 6 +++++- rdkit/Chem/UnitTestSurf.py | 6 +++++- rdkit/Chem/__init__.py | 6 +++++- rdkit/DataManip/Metric/__init__.py | 6 +++++- rdkit/DataStructs/BitEnsemble.py | 6 +++++- rdkit/DataStructs/BitEnsembleDb.py | 6 +++++- rdkit/DataStructs/BitUtils.py | 6 +++++- rdkit/DataStructs/BitVect.py | 6 +++++- rdkit/DataStructs/HierarchyVis.py | 6 +++++- rdkit/DataStructs/TopNContainer.py | 6 +++++- rdkit/DataStructs/UnitTestBitEnsemble.py | 6 +++++- rdkit/DataStructs/UnitTestBitVect.py | 6 +++++- rdkit/DataStructs/UnitTestTopNContainer.py | 6 +++++- rdkit/DataStructs/UnitTestcBitVect.py | 6 +++++- rdkit/DataStructs/UnitTestcBitVect2.py | 6 +++++- rdkit/DataStructs/VectCollection.py | 6 +++++- rdkit/DataStructs/__init__.py | 6 +++++- rdkit/Dbase/DbConnection.py | 6 +++++- rdkit/Dbase/DbInfo.py | 6 +++++- rdkit/Dbase/DbModule.py | 6 +++++- rdkit/Dbase/DbReport.py | 6 +++++- rdkit/Dbase/DbUtils.py | 6 +++++- rdkit/Dbase/Pubmed/PubmedUtils.py | 6 +++++- rdkit/Dbase/Pubmed/QueryParams.py | 6 +++++- rdkit/Dbase/Pubmed/Records.py | 6 +++++- rdkit/Dbase/Pubmed/Searches.py | 6 +++++- rdkit/Dbase/StorageUtils.py | 6 +++++- rdkit/Dbase/UnitTestDbConnect.py | 6 +++++- rdkit/Dbase/UnitTestDbResultSet.py | 6 +++++- rdkit/Dbase/UnitTestDbUtils.py | 6 +++++- rdkit/Dbase/__init__.py | 6 +++++- rdkit/Excel/ExcelWrapper.py | 6 +++++- rdkit/Excel/Molecules.py | 6 +++++- rdkit/Logger/Logger.py | 6 +++++- rdkit/Logger/SpingDemo.py | 6 +++++- rdkit/Logger/UnitTestLogger.py | 6 +++++- rdkit/Logger/demo.py | 6 +++++- rdkit/ML/AnalyzeComposite.py | 6 +++++- rdkit/ML/BuildComposite.py | 6 +++++- rdkit/ML/Cluster/ClusterUtils.py | 6 +++++- rdkit/ML/Cluster/ClusterVis.py | 6 +++++- rdkit/ML/Cluster/Clusters.py | 6 +++++- rdkit/ML/Cluster/Murtagh.py | 6 +++++- rdkit/ML/Cluster/Resemblance.py | 6 +++++- rdkit/ML/Cluster/Standardize.py | 6 +++++- rdkit/ML/Cluster/UnitTestCluster.py | 6 +++++- rdkit/ML/CompositeRun.py | 6 +++++- rdkit/ML/EnrichPlot.py | 6 +++++- rdkit/ML/GrowComposite.py | 6 +++++- rdkit/ML/MatOps.py | 6 +++++- rdkit/ML/ScreenComposite.py | 6 +++++- rdkit/ML/UnitTestAnalyzeComposite.py | 6 +++++- rdkit/ML/UnitTestBuildComposite.py | 6 +++++- rdkit/ML/UnitTestScreenComposite.py | 6 +++++- rdkit/ML/__init__.py | 6 +++++- rdkit/RDConfig.py | 6 +++++- rdkit/RDLogger.py | 6 +++++- rdkit/RDRandom.py | 6 +++++- rdkit/TestRunner.py | 6 +++++- rdkit/sping/Qt/pidQt4.py | 4 ++++ rdkit/utils/chemdraw.py | 6 +++++- 561 files changed, 2735 insertions(+), 498 deletions(-) diff --git a/Code/Catalogs/Catalog.cpp b/Code/Catalogs/Catalog.cpp index bdd436d41..03ddefcdf 100755 --- a/Code/Catalogs/Catalog.cpp +++ b/Code/Catalogs/Catalog.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // diff --git a/Code/Catalogs/Catalog.h b/Code/Catalogs/Catalog.h index 758394d60..0a00b485f 100644 --- a/Code/Catalogs/Catalog.h +++ b/Code/Catalogs/Catalog.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_CATALOG_H__ diff --git a/Code/Catalogs/CatalogEntry.cpp b/Code/Catalogs/CatalogEntry.cpp index a21001503..8aee660a7 100755 --- a/Code/Catalogs/CatalogEntry.cpp +++ b/Code/Catalogs/CatalogEntry.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2004-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "CatalogEntry.h" diff --git a/Code/Catalogs/CatalogEntry.h b/Code/Catalogs/CatalogEntry.h index 9e5e2234f..915bedb65 100644 --- a/Code/Catalogs/CatalogEntry.h +++ b/Code/Catalogs/CatalogEntry.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_CATALOGENTRY_H__ #define __RD_CATALOGENTRY_H__ diff --git a/Code/Catalogs/CatalogParams.cpp b/Code/Catalogs/CatalogParams.cpp index 662fc9801..ee4975048 100755 --- a/Code/Catalogs/CatalogParams.cpp +++ b/Code/Catalogs/CatalogParams.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "CatalogParams.h" diff --git a/Code/Catalogs/CatalogParams.h b/Code/Catalogs/CatalogParams.h index 963a9c00a..3acb3e7a1 100644 --- a/Code/Catalogs/CatalogParams.h +++ b/Code/Catalogs/CatalogParams.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_CATALOGPARAMS_H__ #define __RD_CATALOGPARAMS_H__ diff --git a/Code/ChemicalFeatures/ChemicalFeature.h b/Code/ChemicalFeatures/ChemicalFeature.h index 8a1997682..9c9fd74de 100644 --- a/Code/ChemicalFeatures/ChemicalFeature.h +++ b/Code/ChemicalFeatures/ChemicalFeature.h @@ -2,6 +2,10 @@ // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __CHEMICALFEATURE_H_11012005_1310__ #define __CHEMICALFEATURE_H_11012005_1310__ diff --git a/Code/ChemicalFeatures/FreeChemicalFeature.cpp b/Code/ChemicalFeatures/FreeChemicalFeature.cpp index af12c6fe8..f6dfd7b77 100644 --- a/Code/ChemicalFeatures/FreeChemicalFeature.cpp +++ b/Code/ChemicalFeatures/FreeChemicalFeature.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2005-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FreeChemicalFeature.h" #include diff --git a/Code/ChemicalFeatures/FreeChemicalFeature.h b/Code/ChemicalFeatures/FreeChemicalFeature.h index 5b83bc359..a2a00fd1f 100644 --- a/Code/ChemicalFeatures/FreeChemicalFeature.h +++ b/Code/ChemicalFeatures/FreeChemicalFeature.h @@ -2,6 +2,10 @@ // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __FREECHEMICALFEATURE_H_13012005_1023__ #define __FREECHEMICALFEATURE_H_13012005_1023__ diff --git a/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp b/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp index c4046a026..cf9e9a5da 100644 --- a/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp +++ b/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2004-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp b/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp index c6d18cb75..881db9f3f 100644 --- a/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp +++ b/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp @@ -1,9 +1,12 @@ // $Id$ // // Copyright (C) 2003-2006 Rational Discovery LLC -// All Rights Reserved // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/ChemicalFeatures/testChemicalFeatures.cpp b/Code/ChemicalFeatures/testChemicalFeatures.cpp index 816583f2f..b080ff037 100644 --- a/Code/ChemicalFeatures/testChemicalFeatures.cpp +++ b/Code/ChemicalFeatures/testChemicalFeatures.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // diff --git a/Code/DataManip/MetricMatrixCalc/MetricFuncs.h b/Code/DataManip/MetricMatrixCalc/MetricFuncs.h index 31cdfb36a..dedb7c384 100644 --- a/Code/DataManip/MetricMatrixCalc/MetricFuncs.h +++ b/Code/DataManip/MetricMatrixCalc/MetricFuncs.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2007 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_METRICFUNCS_H__ #define __RD_METRICFUNCS_H__ diff --git a/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h b/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h index 7e721ac1e..5fc3e38b3 100644 --- a/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h +++ b/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h @@ -3,6 +3,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_METRICMATRIXCAL_H__ #define __RD_METRICMATRIXCAL_H__ diff --git a/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp b/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp index 40e1e6b9f..cfd2242bb 100755 --- a/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp +++ b/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdmetric_array_API #include diff --git a/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp b/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp index cb87f72a2..77b5c5c15 100755 --- a/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp +++ b/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "MetricFuncs.h" #include "MetricMatrixCalc.h" diff --git a/Code/DataStructs/BitOps.cpp b/Code/DataStructs/BitOps.cpp index 55429026b..59940fbfd 100755 --- a/Code/DataStructs/BitOps.cpp +++ b/Code/DataStructs/BitOps.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2010 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include "BitVects.h" diff --git a/Code/DataStructs/BitOps.h b/Code/DataStructs/BitOps.h index b45b7ae2c..f70943959 100644 --- a/Code/DataStructs/BitOps.h +++ b/Code/DataStructs/BitOps.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2010 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_BITOPS_H__ #define __RD_BITOPS_H__ diff --git a/Code/DataStructs/BitVect.cpp b/Code/DataStructs/BitVect.cpp index b1dc932d9..f389fe541 100755 --- a/Code/DataStructs/BitVect.cpp +++ b/Code/DataStructs/BitVect.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "BitVect.h" #include diff --git a/Code/DataStructs/BitVect.h b/Code/DataStructs/BitVect.h index 4fd707914..9443c137e 100644 --- a/Code/DataStructs/BitVect.h +++ b/Code/DataStructs/BitVect.h @@ -2,6 +2,10 @@ // Copyright (c) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_BITVECT_H__ #define __RD_BITVECT_H__ diff --git a/Code/DataStructs/BitVectUtils.h b/Code/DataStructs/BitVectUtils.h index e3e9d91ab..5dff23ec6 100644 --- a/Code/DataStructs/BitVectUtils.h +++ b/Code/DataStructs/BitVectUtils.h @@ -2,6 +2,10 @@ // Copyright (c) 2002-2006 greg Landrum, Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_BITVECTS_UTILS_H__ #define __RD_BITVECTS_UTILS_H__ diff --git a/Code/DataStructs/BitVects.h b/Code/DataStructs/BitVects.h index fddb93631..790db57ae 100644 --- a/Code/DataStructs/BitVects.h +++ b/Code/DataStructs/BitVects.h @@ -2,6 +2,10 @@ // Copyright (c) 2001-2006 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file BitVects.h diff --git a/Code/DataStructs/DatastructsException.h b/Code/DataStructs/DatastructsException.h index d7c7e2706..08cbeacd6 100644 --- a/Code/DataStructs/DatastructsException.h +++ b/Code/DataStructs/DatastructsException.h @@ -2,6 +2,10 @@ // Copyright (C) 2005-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _DATASTRUCTS_EXCEPTION_H_20050126 diff --git a/Code/DataStructs/DiscreteDistMat.cpp b/Code/DataStructs/DiscreteDistMat.cpp index 410c512b5..38222dd3c 100644 --- a/Code/DataStructs/DiscreteDistMat.cpp +++ b/Code/DataStructs/DiscreteDistMat.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2004-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "DiscreteDistMat.h" #include "DiscreteValueVect.h" diff --git a/Code/DataStructs/DiscreteDistMat.h b/Code/DataStructs/DiscreteDistMat.h index 5a53d6271..546558b53 100644 --- a/Code/DataStructs/DiscreteDistMat.h +++ b/Code/DataStructs/DiscreteDistMat.h @@ -2,6 +2,10 @@ // Copyright (C) 2004-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_DISCRETEDISTMAT_H__ #define __RD_DISCRETEDISTMAT_H__ diff --git a/Code/DataStructs/DiscreteValueVect.cpp b/Code/DataStructs/DiscreteValueVect.cpp index f14ed5807..0ea8cae0f 100644 --- a/Code/DataStructs/DiscreteValueVect.cpp +++ b/Code/DataStructs/DiscreteValueVect.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "DiscreteValueVect.h" #include diff --git a/Code/DataStructs/DiscreteValueVect.h b/Code/DataStructs/DiscreteValueVect.h index 382257e1b..6abd1bb17 100644 --- a/Code/DataStructs/DiscreteValueVect.h +++ b/Code/DataStructs/DiscreteValueVect.h @@ -2,6 +2,10 @@ // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_DISCRETE_VALUE_VECT_20050124__ #define __RD_DISCRETE_VALUE_VECT_20050124__ diff --git a/Code/DataStructs/ExplicitBitVect.cpp b/Code/DataStructs/ExplicitBitVect.cpp index 583371b83..d79803162 100755 --- a/Code/DataStructs/ExplicitBitVect.cpp +++ b/Code/DataStructs/ExplicitBitVect.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2001-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/DataStructs/ExplicitBitVect.h b/Code/DataStructs/ExplicitBitVect.h index 85037f80d..45b3c724e 100644 --- a/Code/DataStructs/ExplicitBitVect.h +++ b/Code/DataStructs/ExplicitBitVect.h @@ -2,6 +2,10 @@ // Copyright (c) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_EXPLICITBITVECTS_H__ #define __RD_EXPLICITBITVECTS_H__ diff --git a/Code/DataStructs/SparseBitVect.cpp b/Code/DataStructs/SparseBitVect.cpp index e7ca7dec2..96c5b5b18 100755 --- a/Code/DataStructs/SparseBitVect.cpp +++ b/Code/DataStructs/SparseBitVect.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2001-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "SparseBitVect.h" #include diff --git a/Code/DataStructs/SparseBitVect.h b/Code/DataStructs/SparseBitVect.h index bf8648709..45bd5461b 100644 --- a/Code/DataStructs/SparseBitVect.h +++ b/Code/DataStructs/SparseBitVect.h @@ -2,6 +2,10 @@ // Copyright (c) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_SPARSEBITVECTS_H__ #define __RD_SPARSEBITVECTS_H__ diff --git a/Code/DataStructs/SparseIntVect.h b/Code/DataStructs/SparseIntVect.h index 7eb0d5a44..8a1b6e79e 100644 --- a/Code/DataStructs/SparseIntVect.h +++ b/Code/DataStructs/SparseIntVect.h @@ -3,6 +3,10 @@ // Copyright (C) 2007-2008 Greg Landrum // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_SPARSE_INT_VECT_20070921__ #define __RD_SPARSE_INT_VECT_20070921__ diff --git a/Code/DataStructs/Utils.cpp b/Code/DataStructs/Utils.cpp index 699a45842..a3ec5ffef 100755 --- a/Code/DataStructs/Utils.cpp +++ b/Code/DataStructs/Utils.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2002-20`0 greg Landrum, Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "BitVects.h" #include "BitVectUtils.h" diff --git a/Code/DataStructs/Wrap/DataStructs.cpp b/Code/DataStructs/Wrap/DataStructs.cpp index dbdbaf988..f7498462c 100755 --- a/Code/DataStructs/Wrap/DataStructs.cpp +++ b/Code/DataStructs/Wrap/DataStructs.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2001-2006 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/DataStructs/Wrap/DataStructs.h b/Code/DataStructs/Wrap/DataStructs.h index cb3085728..19cc93b92 100644 --- a/Code/DataStructs/Wrap/DataStructs.h +++ b/Code/DataStructs/Wrap/DataStructs.h @@ -2,5 +2,9 @@ // Copyright (c) 2001-2006 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // diff --git a/Code/DataStructs/Wrap/DiscreteValueVect.cpp b/Code/DataStructs/Wrap/DiscreteValueVect.cpp index 82a902d61..4ccc4f7ad 100644 --- a/Code/DataStructs/Wrap/DiscreteValueVect.cpp +++ b/Code/DataStructs/Wrap/DiscreteValueVect.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2005-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/DataStructs/Wrap/SparseIntVect.cpp b/Code/DataStructs/Wrap/SparseIntVect.cpp index 94ceb3583..f1c9118b9 100644 --- a/Code/DataStructs/Wrap/SparseIntVect.cpp +++ b/Code/DataStructs/Wrap/SparseIntVect.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2007-2008 Greg Landrum // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/DataStructs/Wrap/wrap_BitOps.cpp b/Code/DataStructs/Wrap/wrap_BitOps.cpp index 5dc2f667d..c55739e2b 100755 --- a/Code/DataStructs/Wrap/wrap_BitOps.cpp +++ b/Code/DataStructs/Wrap/wrap_BitOps.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp b/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp index 56615198d..fa521bea8 100755 --- a/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp +++ b/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/DataStructs/Wrap/wrap_SparseBV.cpp b/Code/DataStructs/Wrap/wrap_SparseBV.cpp index 1ff12d348..6682dcd84 100755 --- a/Code/DataStructs/Wrap/wrap_SparseBV.cpp +++ b/Code/DataStructs/Wrap/wrap_SparseBV.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/DataStructs/Wrap/wrap_Utils.cpp b/Code/DataStructs/Wrap/wrap_Utils.cpp index 7a3b1e9ff..628937bea 100755 --- a/Code/DataStructs/Wrap/wrap_Utils.cpp +++ b/Code/DataStructs/Wrap/wrap_Utils.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/DataStructs/Wrap/wrap_helpers.h b/Code/DataStructs/Wrap/wrap_helpers.h index cb0f250d6..4d75a7b74 100644 --- a/Code/DataStructs/Wrap/wrap_helpers.h +++ b/Code/DataStructs/Wrap/wrap_helpers.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_WRAPHELPERS_H__ #define __RD_WRAPHELPERS_H__ diff --git a/Code/DataStructs/base64.cpp b/Code/DataStructs/base64.cpp index 639177a52..30d8b7aef 100755 --- a/Code/DataStructs/base64.cpp +++ b/Code/DataStructs/base64.cpp @@ -3,6 +3,10 @@ // Copyright (c) 2002-2008 greg landrum and rational discovery llc // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/DataStructs/base64.h b/Code/DataStructs/base64.h index 1bccdb41c..c58c7c315 100644 --- a/Code/DataStructs/base64.h +++ b/Code/DataStructs/base64.h @@ -2,6 +2,10 @@ // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_BASE64_H__ #define __RD_BASE64_H__ diff --git a/Code/DataStructs/testDatastructs.cpp b/Code/DataStructs/testDatastructs.cpp index dcd2d8f77..7a7a87812 100644 --- a/Code/DataStructs/testDatastructs.cpp +++ b/Code/DataStructs/testDatastructs.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Demos/RDKit/Draw/MolDrawing.h b/Code/Demos/RDKit/Draw/MolDrawing.h index ff1bda38d..59ce7fcd4 100644 --- a/Code/Demos/RDKit/Draw/MolDrawing.h +++ b/Code/Demos/RDKit/Draw/MolDrawing.h @@ -2,7 +2,11 @@ // // Copyright (C) 2009 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOLDRAWING_H_ #define _RD_MOLDRAWING_H_ diff --git a/Code/Demos/RDKit/Draw/demo.cpp b/Code/Demos/RDKit/Draw/demo.cpp index adc94fe0c..52abb2227 100644 --- a/Code/Demos/RDKit/Draw/demo.cpp +++ b/Code/Demos/RDKit/Draw/demo.cpp @@ -1,7 +1,10 @@ // $Id: sample.cpp 793 2008-08-17 14:33:30Z glandrum $ // // Copyright (C) 2009 Greg Landrum -// All Rights Reserved +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/Demos/RDKit/GettingStarted/sample.cpp b/Code/Demos/RDKit/GettingStarted/sample.cpp index 02fc69b8e..ddc2f3f68 100644 --- a/Code/Demos/RDKit/GettingStarted/sample.cpp +++ b/Code/Demos/RDKit/GettingStarted/sample.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2008-2010 Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // Can be built with: // g++ -o sample.exe sample.cpp -I$RDBASE/Code -I$RDBASE/Extern \ diff --git a/Code/Demos/RDKit/MPI/rdkexample1.cpp b/Code/Demos/RDKit/MPI/rdkexample1.cpp index 3a2a4be1f..e5c4a2acf 100644 --- a/Code/Demos/RDKit/MPI/rdkexample1.cpp +++ b/Code/Demos/RDKit/MPI/rdkexample1.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2009 Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/Demos/RDKit/MPI/rdkexample2.cpp b/Code/Demos/RDKit/MPI/rdkexample2.cpp index dce187c8b..d1a3ba4ef 100644 --- a/Code/Demos/RDKit/MPI/rdkexample2.cpp +++ b/Code/Demos/RDKit/MPI/rdkexample2.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2009 Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/Demos/SWIG/RDKFuncs.cpp b/Code/Demos/SWIG/RDKFuncs.cpp index 24156b1f2..cbe61cc29 100644 --- a/Code/Demos/SWIG/RDKFuncs.cpp +++ b/Code/Demos/SWIG/RDKFuncs.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2008 Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // diff --git a/Code/Demos/SWIG/RDKFuncs.h b/Code/Demos/SWIG/RDKFuncs.h index 3f07c2015..92622b88e 100644 --- a/Code/Demos/SWIG/RDKFuncs.h +++ b/Code/Demos/SWIG/RDKFuncs.h @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2008-2010 Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Demos/sqlite/rdk_funcs.cpp b/Code/Demos/sqlite/rdk_funcs.cpp index 797289122..8de6af8a1 100644 --- a/Code/Demos/sqlite/rdk_funcs.cpp +++ b/Code/Demos/sqlite/rdk_funcs.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2007,2008 Greg Landrum // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/DistGeom/BoundsMatrix.h b/Code/DistGeom/BoundsMatrix.h index 77c216c43..83875c421 100644 --- a/Code/DistGeom/BoundsMatrix.h +++ b/Code/DistGeom/BoundsMatrix.h @@ -1,8 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC -// All Rights Reserved // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_BOUNDS_MATRIX_H__ #define __RD_BOUNDS_MATRIX_H__ diff --git a/Code/DistGeom/ChiralSet.h b/Code/DistGeom/ChiralSet.h index 1312f72a3..141acfa14 100644 --- a/Code/DistGeom/ChiralSet.h +++ b/Code/DistGeom/ChiralSet.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_CHIRAL_SET_H__ #define __RD_CHIRAL_SET_H__ diff --git a/Code/DistGeom/DistGeomUtils.cpp b/Code/DistGeom/DistGeomUtils.cpp index 113417a8d..f5e8c421a 100644 --- a/Code/DistGeom/DistGeomUtils.cpp +++ b/Code/DistGeom/DistGeomUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "BoundsMatrix.h" #include "DistGeomUtils.h" diff --git a/Code/DistGeom/DistGeomUtils.h b/Code/DistGeom/DistGeomUtils.h index 4a9995ca4..15163578d 100644 --- a/Code/DistGeom/DistGeomUtils.h +++ b/Code/DistGeom/DistGeomUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2007 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_DISTGEOMUTILS_H_ #define _RD_DISTGEOMUTILS_H_ diff --git a/Code/DistGeom/DistViolationContrib.cpp b/Code/DistGeom/DistViolationContrib.cpp index 9c44ac2fe..147a2e203 100644 --- a/Code/DistGeom/DistViolationContrib.cpp +++ b/Code/DistGeom/DistViolationContrib.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "DistViolationContrib.h" diff --git a/Code/DistGeom/DistViolationContrib.h b/Code/DistGeom/DistViolationContrib.h index 00f91aace..604114a71 100644 --- a/Code/DistGeom/DistViolationContrib.h +++ b/Code/DistGeom/DistViolationContrib.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_DISTVIOLATIONCONTRIB_H__ #define __RD_DISTVIOLATIONCONTRIB_H__ diff --git a/Code/DistGeom/TriangleSmooth.cpp b/Code/DistGeom/TriangleSmooth.cpp index c2d3d2842..8069f5955 100644 --- a/Code/DistGeom/TriangleSmooth.cpp +++ b/Code/DistGeom/TriangleSmooth.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "BoundsMatrix.h" #include "TriangleSmooth.h" diff --git a/Code/DistGeom/TriangleSmooth.h b/Code/DistGeom/TriangleSmooth.h index 55548ece9..6c7801d67 100644 --- a/Code/DistGeom/TriangleSmooth.h +++ b/Code/DistGeom/TriangleSmooth.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_TRIANGLE_SMOOTH_H__ #define __RD_TRIANGLE_SMOOTH_H__ diff --git a/Code/DistGeom/Wrap/DistGeom.cpp b/Code/DistGeom/Wrap/DistGeom.cpp index d97d0ea9a..1d7689d1b 100644 --- a/Code/DistGeom/Wrap/DistGeom.cpp +++ b/Code/DistGeom/Wrap/DistGeom.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/DistGeom/testDistGeom.cpp b/Code/DistGeom/testDistGeom.cpp index 95ec4dfec..ff54b878c 100644 --- a/Code/DistGeom/testDistGeom.cpp +++ b/Code/DistGeom/testDistGeom.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // diff --git a/Code/Features/Feature.cpp b/Code/Features/Feature.cpp index ad951d07e..2d4b992e0 100644 --- a/Code/Features/Feature.cpp +++ b/Code/Features/Feature.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include namespace RDFeatures { diff --git a/Code/Features/Feature.h b/Code/Features/Feature.h index 0bff0a39b..b474cf572 100644 --- a/Code/Features/Feature.h +++ b/Code/Features/Feature.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __FEATURE_H_30112004_1121__ #define __FEATURE_H_30112004_1121__ diff --git a/Code/Features/testFeatures.cpp b/Code/Features/testFeatures.cpp index 5ecf81b3d..9ca46545e 100644 --- a/Code/Features/testFeatures.cpp +++ b/Code/Features/testFeatures.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/ForceField/Contrib.h b/Code/ForceField/Contrib.h index 707912adc..2c7b64e10 100644 --- a/Code/ForceField/Contrib.h +++ b/Code/ForceField/Contrib.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_FFCONTRIB_H__ #define __RD_FFCONTRIB_H__ diff --git a/Code/ForceField/ForceField.cpp b/Code/ForceField/ForceField.cpp index 7b6eaaca4..dbaaa952a 100644 --- a/Code/ForceField/ForceField.cpp +++ b/Code/ForceField/ForceField.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "ForceField.h" #include "Contrib.h" diff --git a/Code/ForceField/ForceField.h b/Code/ForceField/ForceField.h index fe9f2c847..1a5a2dfb9 100644 --- a/Code/ForceField/ForceField.h +++ b/Code/ForceField/ForceField.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_FORCEFIELD_H__ #define __RD_FORCEFIELD_H__ diff --git a/Code/ForceField/UFF/AngleBend.cpp b/Code/ForceField/UFF/AngleBend.cpp index 393a3f503..9666c3c60 100644 --- a/Code/ForceField/UFF/AngleBend.cpp +++ b/Code/ForceField/UFF/AngleBend.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "AngleBend.h" #include "BondStretch.h" diff --git a/Code/ForceField/UFF/AngleBend.h b/Code/ForceField/UFF/AngleBend.h index ed0422bfa..e4b968397 100644 --- a/Code/ForceField/UFF/AngleBend.h +++ b/Code/ForceField/UFF/AngleBend.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_ANGLEBEND_H__ #define __RD_ANGLEBEND_H__ diff --git a/Code/ForceField/UFF/BondStretch.cpp b/Code/ForceField/UFF/BondStretch.cpp index 164673b56..6d2dd1def 100644 --- a/Code/ForceField/UFF/BondStretch.cpp +++ b/Code/ForceField/UFF/BondStretch.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "BondStretch.h" diff --git a/Code/ForceField/UFF/BondStretch.h b/Code/ForceField/UFF/BondStretch.h index bf694dd84..2609a9598 100644 --- a/Code/ForceField/UFF/BondStretch.h +++ b/Code/ForceField/UFF/BondStretch.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_BONDSTRETCH_H__ #define __RD_BONDSTRETCH_H__ diff --git a/Code/ForceField/UFF/Contribs.h b/Code/ForceField/UFF/Contribs.h index 8e3bb6e10..993d55761 100644 --- a/Code/ForceField/UFF/Contribs.h +++ b/Code/ForceField/UFF/Contribs.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_UFFCONTRIBS_H__ #define __RD_UFFCONTRIBS_H__ diff --git a/Code/ForceField/UFF/DistanceConstraint.cpp b/Code/ForceField/UFF/DistanceConstraint.cpp index 5796288da..45c6bae94 100644 --- a/Code/ForceField/UFF/DistanceConstraint.cpp +++ b/Code/ForceField/UFF/DistanceConstraint.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "DistanceConstraint.h" #include diff --git a/Code/ForceField/UFF/DistanceConstraint.h b/Code/ForceField/UFF/DistanceConstraint.h index 552c43c1d..72efc755b 100644 --- a/Code/ForceField/UFF/DistanceConstraint.h +++ b/Code/ForceField/UFF/DistanceConstraint.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_DISTANCECONSTRAINT_H__ #define __RD_DISTANCECONSTRAINT_H__ diff --git a/Code/ForceField/UFF/Nonbonded.cpp b/Code/ForceField/UFF/Nonbonded.cpp index 2671b7379..aa165c5ca 100644 --- a/Code/ForceField/UFF/Nonbonded.cpp +++ b/Code/ForceField/UFF/Nonbonded.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Nonbonded.h" #include "Params.h" diff --git a/Code/ForceField/UFF/Nonbonded.h b/Code/ForceField/UFF/Nonbonded.h index d1821c9fd..e582357b6 100644 --- a/Code/ForceField/UFF/Nonbonded.h +++ b/Code/ForceField/UFF/Nonbonded.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_NONBONDED_H__ #define __RD_NONBONDED_H__ diff --git a/Code/ForceField/UFF/Params.cpp b/Code/ForceField/UFF/Params.cpp index 20f624d21..f3542c36f 100644 --- a/Code/ForceField/UFF/Params.cpp +++ b/Code/ForceField/UFF/Params.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifdef WIN32 #define _USE_MATH_DEFINES diff --git a/Code/ForceField/UFF/Params.h b/Code/ForceField/UFF/Params.h index 2e3fa6a86..c10305d26 100644 --- a/Code/ForceField/UFF/Params.h +++ b/Code/ForceField/UFF/Params.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_PARAMS_H__ #define __RD_PARAMS_H__ diff --git a/Code/ForceField/UFF/TorsionAngle.cpp b/Code/ForceField/UFF/TorsionAngle.cpp index 2145b997b..47d1ec1f8 100644 --- a/Code/ForceField/UFF/TorsionAngle.cpp +++ b/Code/ForceField/UFF/TorsionAngle.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "TorsionAngle.h" #include "Params.h" diff --git a/Code/ForceField/UFF/TorsionAngle.h b/Code/ForceField/UFF/TorsionAngle.h index e8b9d6980..53d6de32d 100644 --- a/Code/ForceField/UFF/TorsionAngle.h +++ b/Code/ForceField/UFF/TorsionAngle.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_TORSIONANGLE_H__ #define __RD_TORSIONANGLE_H__ diff --git a/Code/ForceField/Wrap/ForceField.cpp b/Code/ForceField/Wrap/ForceField.cpp index 4eee5c7a7..fcb14b42e 100644 --- a/Code/ForceField/Wrap/ForceField.cpp +++ b/Code/ForceField/Wrap/ForceField.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/ForceField/Wrap/PyForceField.h b/Code/ForceField/Wrap/PyForceField.h index 96a9b98a7..8b881c17b 100644 --- a/Code/ForceField/Wrap/PyForceField.h +++ b/Code/ForceField/Wrap/PyForceField.h @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/ForceField/testForceField.cpp b/Code/ForceField/testForceField.cpp index 214894026..f493180e4 100644 --- a/Code/ForceField/testForceField.cpp +++ b/Code/ForceField/testForceField.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Geometry/Grid3D.h b/Code/Geometry/Grid3D.h index 917b2e001..f82a08e77 100644 --- a/Code/Geometry/Grid3D.h +++ b/Code/Geometry/Grid3D.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _GRID3D_H_20050124_1113 #define _GRID3D_H_20050124_1113 diff --git a/Code/Geometry/GridUtils.cpp b/Code/Geometry/GridUtils.cpp index 3bb11c50d..e3c349ea0 100644 --- a/Code/Geometry/GridUtils.cpp +++ b/Code/Geometry/GridUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2007 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "GridUtils.h" #include "Grid3D.h" diff --git a/Code/Geometry/GridUtils.h b/Code/Geometry/GridUtils.h index 6a94744c4..bc4d77411 100644 --- a/Code/Geometry/GridUtils.h +++ b/Code/Geometry/GridUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2007 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _GRIDUTILS_H_20050126 #define _GRIDUTILS_H_20050126 diff --git a/Code/Geometry/Transform.h b/Code/Geometry/Transform.h index f4cc08a69..b369bb495 100644 --- a/Code/Geometry/Transform.h +++ b/Code/Geometry/Transform.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_TRANSFORM_H__ #define __RD_TRANSFORM_H__ diff --git a/Code/Geometry/Transform2D.cpp b/Code/Geometry/Transform2D.cpp index 366084995..087c2db75 100644 --- a/Code/Geometry/Transform2D.cpp +++ b/Code/Geometry/Transform2D.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Geometry/Transform2D.h b/Code/Geometry/Transform2D.h index ba1f04c0b..3a2fcdc5e 100644 --- a/Code/Geometry/Transform2D.h +++ b/Code/Geometry/Transform2D.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_TRANSFORM2D_H__ #define __RD_TRANSFORM2D_H__ diff --git a/Code/Geometry/Transform3D.cpp b/Code/Geometry/Transform3D.cpp index 2640da341..b8f03326d 100644 --- a/Code/Geometry/Transform3D.cpp +++ b/Code/Geometry/Transform3D.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/Geometry/Transform3D.h b/Code/Geometry/Transform3D.h index bb704d057..5244baa20 100644 --- a/Code/Geometry/Transform3D.h +++ b/Code/Geometry/Transform3D.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_TRANSFORM3D_H__ #define __RD_TRANSFORM3D_H__ diff --git a/Code/Geometry/UniformGrid3D.cpp b/Code/Geometry/UniformGrid3D.cpp index a6e872ced..fb045a9e2 100644 --- a/Code/Geometry/UniformGrid3D.cpp +++ b/Code/Geometry/UniformGrid3D.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "UniformGrid3D.h" #include diff --git a/Code/Geometry/UniformGrid3D.h b/Code/Geometry/UniformGrid3D.h index 79d733b13..a082e10c2 100644 --- a/Code/Geometry/UniformGrid3D.h +++ b/Code/Geometry/UniformGrid3D.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _UNIFORMGRID3D_H_20050124_1703 #define _UNIFORMGRID3D_H_20050124_1703 diff --git a/Code/Geometry/Utils.h b/Code/Geometry/Utils.h index 20651faa2..729c3f5d3 100644 --- a/Code/Geometry/Utils.h +++ b/Code/Geometry/Utils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_DIST_UTILS_H__ #define __RD_DIST_UTILS_H__ diff --git a/Code/Geometry/Wrap/Point.cpp b/Code/Geometry/Wrap/Point.cpp index 932331c85..cf65358bb 100644 --- a/Code/Geometry/Wrap/Point.cpp +++ b/Code/Geometry/Wrap/Point.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Geometry/Wrap/UniformGrid3D.cpp b/Code/Geometry/Wrap/UniformGrid3D.cpp index 71e282fbc..7c10fa9d2 100644 --- a/Code/Geometry/Wrap/UniformGrid3D.cpp +++ b/Code/Geometry/Wrap/UniformGrid3D.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/Geometry/Wrap/rdGeometry.cpp b/Code/Geometry/Wrap/rdGeometry.cpp index bf4cf46c0..10a52a3e6 100644 --- a/Code/Geometry/Wrap/rdGeometry.cpp +++ b/Code/Geometry/Wrap/rdGeometry.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Geometry/point.cpp b/Code/Geometry/point.cpp index dd0f6a3a6..f9e7c2045 100644 --- a/Code/Geometry/point.cpp +++ b/Code/Geometry/point.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "point.h" //#include diff --git a/Code/Geometry/point.h b/Code/Geometry/point.h index b56ce76f5..4f63620be 100644 --- a/Code/Geometry/point.h +++ b/Code/Geometry/point.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // diff --git a/Code/Geometry/testGrid.cpp b/Code/Geometry/testGrid.cpp index 8bbb8788d..ea51efdd4 100644 --- a/Code/Geometry/testGrid.cpp +++ b/Code/Geometry/testGrid.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "UniformGrid3D.h" #include diff --git a/Code/Geometry/testTransforms.cpp b/Code/Geometry/testTransforms.cpp index 115361c24..a38555ab8 100644 --- a/Code/Geometry/testTransforms.cpp +++ b/Code/Geometry/testTransforms.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/AddHs.cpp b/Code/GraphMol/AddHs.cpp index bc4bf4e58..591f2c105 100644 --- a/Code/GraphMol/AddHs.cpp +++ b/Code/GraphMol/AddHs.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDKitBase.h" #include diff --git a/Code/GraphMol/Aromaticity.cpp b/Code/GraphMol/Aromaticity.cpp index 70882f81a..be7cd60cd 100644 --- a/Code/GraphMol/Aromaticity.cpp +++ b/Code/GraphMol/Aromaticity.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Atom.cpp b/Code/GraphMol/Atom.cpp index e8021a9b5..66c9af14a 100644 --- a/Code/GraphMol/Atom.cpp +++ b/Code/GraphMol/Atom.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Atom.h b/Code/GraphMol/Atom.h index ef681f0c9..3716d1fb7 100644 --- a/Code/GraphMol/Atom.h +++ b/Code/GraphMol/Atom.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file Atom.h diff --git a/Code/GraphMol/AtomIterators.cpp b/Code/GraphMol/AtomIterators.cpp index dfc2c95d7..7d2f684b8 100644 --- a/Code/GraphMol/AtomIterators.cpp +++ b/Code/GraphMol/AtomIterators.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "AtomIterators.h" #include "RDKitBase.h" diff --git a/Code/GraphMol/AtomIterators.h b/Code/GraphMol/AtomIterators.h index b65f94ae2..7bdcc918f 100644 --- a/Code/GraphMol/AtomIterators.h +++ b/Code/GraphMol/AtomIterators.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file AtomIterators.h diff --git a/Code/GraphMol/Basement/FeatTrees/FeatTree.cpp b/Code/GraphMol/Basement/FeatTrees/FeatTree.cpp index 8f8a6051b..c11a2c5b6 100644 --- a/Code/GraphMol/Basement/FeatTrees/FeatTree.cpp +++ b/Code/GraphMol/Basement/FeatTrees/FeatTree.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Basement/FeatTrees/FeatTree.h b/Code/GraphMol/Basement/FeatTrees/FeatTree.h index 3f579a15f..148b344ca 100644 --- a/Code/GraphMol/Basement/FeatTrees/FeatTree.h +++ b/Code/GraphMol/Basement/FeatTrees/FeatTree.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FEATTREE_H_ diff --git a/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.cpp b/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.cpp index 2bde3eafb..3d51a40d6 100644 --- a/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.cpp +++ b/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.h b/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.h index d29a81e6d..ac0ea48f8 100644 --- a/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.h +++ b/Code/GraphMol/Basement/FeatTrees/FeatTreeUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file FeatTreeUtils.h diff --git a/Code/GraphMol/Basement/FeatTrees/testFeatTrees.cpp b/Code/GraphMol/Basement/FeatTrees/testFeatTrees.cpp index e0e6f558f..481495fa6 100644 --- a/Code/GraphMol/Basement/FeatTrees/testFeatTrees.cpp +++ b/Code/GraphMol/Basement/FeatTrees/testFeatTrees.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Bond.cpp b/Code/GraphMol/Bond.cpp index 83e70cc77..c5bc6941d 100644 --- a/Code/GraphMol/Bond.cpp +++ b/Code/GraphMol/Bond.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Bond.h" #include "Atom.h" diff --git a/Code/GraphMol/Bond.h b/Code/GraphMol/Bond.h index 274eb3230..b22bd36b7 100644 --- a/Code/GraphMol/Bond.h +++ b/Code/GraphMol/Bond.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_BOND_H #define _RD_BOND_H diff --git a/Code/GraphMol/BondIterators.cpp b/Code/GraphMol/BondIterators.cpp index cd49c8ff0..619c525cd 100644 --- a/Code/GraphMol/BondIterators.cpp +++ b/Code/GraphMol/BondIterators.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "BondIterators.h" diff --git a/Code/GraphMol/BondIterators.h b/Code/GraphMol/BondIterators.h index db6ff78ce..9c562900d 100644 --- a/Code/GraphMol/BondIterators.h +++ b/Code/GraphMol/BondIterators.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file BondIterators.h diff --git a/Code/GraphMol/Canon.cpp b/Code/GraphMol/Canon.cpp index 842ef9abb..a16915990 100644 --- a/Code/GraphMol/Canon.cpp +++ b/Code/GraphMol/Canon.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Canon.h b/Code/GraphMol/Canon.h index 1054e2dfc..30f4f00de 100644 --- a/Code/GraphMol/Canon.h +++ b/Code/GraphMol/Canon.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_CANON_H_ #define _RD_CANON_H_ diff --git a/Code/GraphMol/ChemReactions/ReactionPickler.cpp b/Code/GraphMol/ChemReactions/ReactionPickler.cpp index f14c69adb..b9abc365b 100644 --- a/Code/GraphMol/ChemReactions/ReactionPickler.cpp +++ b/Code/GraphMol/ChemReactions/ReactionPickler.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2009 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/ChemReactions/ReactionPickler.h b/Code/GraphMol/ChemReactions/ReactionPickler.h index 27406f93d..8571fd251 100644 --- a/Code/GraphMol/ChemReactions/ReactionPickler.h +++ b/Code/GraphMol/ChemReactions/ReactionPickler.h @@ -1,7 +1,11 @@ // // Copyright (C) 2009 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_RXNPICKLE_H_2JUNE2009_ #define _RD_RXNPICKLE_H_2JUNE2009_ diff --git a/Code/GraphMol/ChemTransforms/ChemTransforms.cpp b/Code/GraphMol/ChemTransforms/ChemTransforms.cpp index 318611de7..7a6e9866b 100644 --- a/Code/GraphMol/ChemTransforms/ChemTransforms.cpp +++ b/Code/GraphMol/ChemTransforms/ChemTransforms.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2006-2008 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/ChemTransforms/ChemTransforms.h b/Code/GraphMol/ChemTransforms/ChemTransforms.h index 73401c69d..4b72d1a1e 100644 --- a/Code/GraphMol/ChemTransforms/ChemTransforms.h +++ b/Code/GraphMol/ChemTransforms/ChemTransforms.h @@ -1,7 +1,11 @@ // // Copyright (C) 2006-2008 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_CHEMTRANSFORMS_H__ #define _RD_CHEMTRANSFORMS_H__ diff --git a/Code/GraphMol/ChemTransforms/testChemTransforms.cpp b/Code/GraphMol/ChemTransforms/testChemTransforms.cpp index d71a4f3d2..7c9d1d0ff 100644 --- a/Code/GraphMol/ChemTransforms/testChemTransforms.cpp +++ b/Code/GraphMol/ChemTransforms/testChemTransforms.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2006 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Chirality.cpp b/Code/GraphMol/Chirality.cpp index 2d09d1290..d559888ca 100644 --- a/Code/GraphMol/Chirality.cpp +++ b/Code/GraphMol/Chirality.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Chirality.h b/Code/GraphMol/Chirality.h index 80f76a1da..28d4b6a54 100644 --- a/Code/GraphMol/Chirality.h +++ b/Code/GraphMol/Chirality.h @@ -1,7 +1,11 @@ // // Copyright (C) 2008 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file Chirality.h diff --git a/Code/GraphMol/Conformer.cpp b/Code/GraphMol/Conformer.cpp index 4b36fda52..211d305b8 100644 --- a/Code/GraphMol/Conformer.cpp +++ b/Code/GraphMol/Conformer.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Conformer.h" #include "ROMol.h" diff --git a/Code/GraphMol/Conformer.h b/Code/GraphMol/Conformer.h index 82af5bf7f..f5cca3c4d 100644 --- a/Code/GraphMol/Conformer.h +++ b/Code/GraphMol/Conformer.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_CONFORMER_H #define _RD_CONFORMER_H diff --git a/Code/GraphMol/ConjugHybrid.cpp b/Code/GraphMol/ConjugHybrid.cpp index 837d84c72..e8d3843e9 100755 --- a/Code/GraphMol/ConjugHybrid.cpp +++ b/Code/GraphMol/ConjugHybrid.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "ROMol.h" #include "RWMol.h" diff --git a/Code/GraphMol/Depictor/Basement/Depictor.cpp b/Code/GraphMol/Depictor/Basement/Depictor.cpp index 0c5866f67..4e05b4db0 100755 --- a/Code/GraphMol/Depictor/Basement/Depictor.cpp +++ b/Code/GraphMol/Depictor/Basement/Depictor.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Depictor/Basement/Depictor.h b/Code/GraphMol/Depictor/Basement/Depictor.h index 877cdafb9..5dc30b3b3 100644 --- a/Code/GraphMol/Depictor/Basement/Depictor.h +++ b/Code/GraphMol/Depictor/Basement/Depictor.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_DEPICTOR_H_ #define _RD_DEPICTOR_H_ diff --git a/Code/GraphMol/Depictor/Basement/DepictorDLL.cpp b/Code/GraphMol/Depictor/Basement/DepictorDLL.cpp index 6684f8e89..e939fd6da 100755 --- a/Code/GraphMol/Depictor/Basement/DepictorDLL.cpp +++ b/Code/GraphMol/Depictor/Basement/DepictorDLL.cpp @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Depictor/Basement/depictTest.cpp b/Code/GraphMol/Depictor/Basement/depictTest.cpp index 8e04d7581..72b0724c2 100755 --- a/Code/GraphMol/Depictor/Basement/depictTest.cpp +++ b/Code/GraphMol/Depictor/Basement/depictTest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Depictor/DepictUtils.cpp b/Code/GraphMol/Depictor/DepictUtils.cpp index d9f900e95..60a256a39 100755 --- a/Code/GraphMol/Depictor/DepictUtils.cpp +++ b/Code/GraphMol/Depictor/DepictUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Depictor/DepictUtils.h b/Code/GraphMol/Depictor/DepictUtils.h index 0190f9fe2..27dde8d4a 100644 --- a/Code/GraphMol/Depictor/DepictUtils.h +++ b/Code/GraphMol/Depictor/DepictUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_DEPICT_UTILS_H_ #define _RD_DEPICT_UTILS_H_ diff --git a/Code/GraphMol/Depictor/EmbeddedFrag.cpp b/Code/GraphMol/Depictor/EmbeddedFrag.cpp index 29ba2da2d..8571958f1 100755 --- a/Code/GraphMol/Depictor/EmbeddedFrag.cpp +++ b/Code/GraphMol/Depictor/EmbeddedFrag.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Depictor/EmbeddedFrag.h b/Code/GraphMol/Depictor/EmbeddedFrag.h index 9f5f964cf..6263e214c 100644 --- a/Code/GraphMol/Depictor/EmbeddedFrag.h +++ b/Code/GraphMol/Depictor/EmbeddedFrag.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_EMBEDDED_FRAG_H_ #define _RD_EMBEDDED_FRAG_H_ diff --git a/Code/GraphMol/Depictor/RDDepictor.cpp b/Code/GraphMol/Depictor/RDDepictor.cpp index 5d17fc6c0..6bdaac292 100755 --- a/Code/GraphMol/Depictor/RDDepictor.cpp +++ b/Code/GraphMol/Depictor/RDDepictor.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDDepictor.h" diff --git a/Code/GraphMol/Depictor/RDDepictor.h b/Code/GraphMol/Depictor/RDDepictor.h index a93f1db6f..35356a43d 100644 --- a/Code/GraphMol/Depictor/RDDepictor.h +++ b/Code/GraphMol/Depictor/RDDepictor.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDDEPICTOR_H_ diff --git a/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp b/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp index 9bbac8f64..151b9e7ce 100755 --- a/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp +++ b/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Depictor/testDepictor.cpp b/Code/GraphMol/Depictor/testDepictor.cpp index 67ef71ac7..230269836 100755 --- a/Code/GraphMol/Depictor/testDepictor.cpp +++ b/Code/GraphMol/Depictor/testDepictor.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Descriptors/Crippen.cpp b/Code/GraphMol/Descriptors/Crippen.cpp index f3e12ae8c..216249e55 100644 --- a/Code/GraphMol/Descriptors/Crippen.cpp +++ b/Code/GraphMol/Descriptors/Crippen.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Descriptors/Crippen.h b/Code/GraphMol/Descriptors/Crippen.h index 49f6f9d9b..5364a8585 100644 --- a/Code/GraphMol/Descriptors/Crippen.h +++ b/Code/GraphMol/Descriptors/Crippen.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2007 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file Crippen.h diff --git a/Code/GraphMol/Descriptors/MolDescriptors.cpp b/Code/GraphMol/Descriptors/MolDescriptors.cpp index e0f16631c..ccb503d90 100644 --- a/Code/GraphMol/Descriptors/MolDescriptors.cpp +++ b/Code/GraphMol/Descriptors/MolDescriptors.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Descriptors/MolDescriptors.h b/Code/GraphMol/Descriptors/MolDescriptors.h index 1da33390f..13bf6efd4 100644 --- a/Code/GraphMol/Descriptors/MolDescriptors.h +++ b/Code/GraphMol/Descriptors/MolDescriptors.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOLDESCRIPTORS_H_ diff --git a/Code/GraphMol/Descriptors/MolSurf.cpp b/Code/GraphMol/Descriptors/MolSurf.cpp index ce62e1ed1..5f9f1f36c 100644 --- a/Code/GraphMol/Descriptors/MolSurf.cpp +++ b/Code/GraphMol/Descriptors/MolSurf.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Descriptors/MolSurf.h b/Code/GraphMol/Descriptors/MolSurf.h index 8c3aa2131..e8d2cadd6 100644 --- a/Code/GraphMol/Descriptors/MolSurf.h +++ b/Code/GraphMol/Descriptors/MolSurf.h @@ -1,7 +1,11 @@ // // Copyright (C) 2007 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file MolSurf.h diff --git a/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp b/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp index 5ace18715..37970e4a6 100644 --- a/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp +++ b/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007-2010 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Descriptors/test.cpp b/Code/GraphMol/Descriptors/test.cpp index c290fba87..6eee3e4ec 100644 --- a/Code/GraphMol/Descriptors/test.cpp +++ b/Code/GraphMol/Descriptors/test.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp b/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp index 42edb21f2..4fbbca368 100644 --- a/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp +++ b/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h b/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h index 52ae13be3..ebc81f030 100644 --- a/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h +++ b/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_BOUNDS_MATRIX_BUILDER_H_ #define _RD_BOUNDS_MATRIX_BUILDER_H_ diff --git a/Code/GraphMol/DistGeomHelpers/Embedder.cpp b/Code/GraphMol/DistGeomHelpers/Embedder.cpp index ee03a1775..716f781ba 100644 --- a/Code/GraphMol/DistGeomHelpers/Embedder.cpp +++ b/Code/GraphMol/DistGeomHelpers/Embedder.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Embedder.h" diff --git a/Code/GraphMol/DistGeomHelpers/Embedder.h b/Code/GraphMol/DistGeomHelpers/Embedder.h index 388f9e2c9..e213280db 100644 --- a/Code/GraphMol/DistGeomHelpers/Embedder.h +++ b/Code/GraphMol/DistGeomHelpers/Embedder.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_EMBEDDER_H_ diff --git a/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp b/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp index 7adfee4e8..6f35c4061 100644 --- a/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp +++ b/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #define PY_ARRAY_UNIQUE_SYMBOL rdDistGeom_array_API diff --git a/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp b/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp index 817ee6b40..db220ea7e 100644 --- a/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp +++ b/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/FileParserUtils.h b/Code/GraphMol/FileParsers/FileParserUtils.h index b34595ea3..77454623b 100644 --- a/Code/GraphMol/FileParsers/FileParserUtils.h +++ b/Code/GraphMol/FileParsers/FileParserUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FILEPARSERUTILS_H #define _RD_FILEPARSERUTILS_H diff --git a/Code/GraphMol/FileParsers/FileParsers.h b/Code/GraphMol/FileParsers/FileParsers.h index 70782645d..e916848c5 100644 --- a/Code/GraphMol/FileParsers/FileParsers.h +++ b/Code/GraphMol/FileParsers/FileParsers.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FILEPARSERS_H #define _RD_FILEPARSERS_H diff --git a/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp b/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp index 4bc05334f..ad445b750 100644 --- a/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp +++ b/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2009 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/MolFileParser.cpp b/Code/GraphMol/FileParsers/MolFileParser.cpp index 27c027b1b..09c930489 100755 --- a/Code/GraphMol/FileParsers/MolFileParser.cpp +++ b/Code/GraphMol/FileParsers/MolFileParser.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FileParsers.h" diff --git a/Code/GraphMol/FileParsers/MolFileStereochem.cpp b/Code/GraphMol/FileParsers/MolFileStereochem.cpp index 82671e586..ddbe203f5 100644 --- a/Code/GraphMol/FileParsers/MolFileStereochem.cpp +++ b/Code/GraphMol/FileParsers/MolFileStereochem.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // #include diff --git a/Code/GraphMol/FileParsers/MolFileStereochem.h b/Code/GraphMol/FileParsers/MolFileStereochem.h index e07da3a0e..cd05c47ad 100644 --- a/Code/GraphMol/FileParsers/MolFileStereochem.h +++ b/Code/GraphMol/FileParsers/MolFileStereochem.h @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOL_FILE_STEREOCHEM_H_ #define _RD_MOL_FILE_STEREOCHEM_H_ diff --git a/Code/GraphMol/FileParsers/MolFileWriter.cpp b/Code/GraphMol/FileParsers/MolFileWriter.cpp index 7726301da..809d01095 100755 --- a/Code/GraphMol/FileParsers/MolFileWriter.cpp +++ b/Code/GraphMol/FileParsers/MolFileWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FileParsers.h" #include "MolFileStereochem.h" diff --git a/Code/GraphMol/FileParsers/MolSupplier.h b/Code/GraphMol/FileParsers/MolSupplier.h index 4d1ca98b6..3c7c130a1 100644 --- a/Code/GraphMol/FileParsers/MolSupplier.h +++ b/Code/GraphMol/FileParsers/MolSupplier.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2008 greg landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOLSUPPLIER_H #define _RD_MOLSUPPLIER_H diff --git a/Code/GraphMol/FileParsers/MolWriters.h b/Code/GraphMol/FileParsers/MolWriters.h index cb81d5205..522adfee0 100644 --- a/Code/GraphMol/FileParsers/MolWriters.h +++ b/Code/GraphMol/FileParsers/MolWriters.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2010 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOLWRITERS_H_ diff --git a/Code/GraphMol/FileParsers/SDMolSupplier.cpp b/Code/GraphMol/FileParsers/SDMolSupplier.cpp index 5208e45f9..1843655c9 100755 --- a/Code/GraphMol/FileParsers/SDMolSupplier.cpp +++ b/Code/GraphMol/FileParsers/SDMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/SDWriter.cpp b/Code/GraphMol/FileParsers/SDWriter.cpp index ef8e10682..b43492add 100755 --- a/Code/GraphMol/FileParsers/SDWriter.cpp +++ b/Code/GraphMol/FileParsers/SDWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp b/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp index ec63716a3..db2cb8bd1 100755 --- a/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp +++ b/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/SmilesWriter.cpp b/Code/GraphMol/FileParsers/SmilesWriter.cpp index 89c0b81a2..069348a77 100755 --- a/Code/GraphMol/FileParsers/SmilesWriter.cpp +++ b/Code/GraphMol/FileParsers/SmilesWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/TDTMolSupplier.cpp b/Code/GraphMol/FileParsers/TDTMolSupplier.cpp index 74ebd2c04..0cd7978a0 100644 --- a/Code/GraphMol/FileParsers/TDTMolSupplier.cpp +++ b/Code/GraphMol/FileParsers/TDTMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/TDTWriter.cpp b/Code/GraphMol/FileParsers/TDTWriter.cpp index 6918efef4..237e3276e 100644 --- a/Code/GraphMol/FileParsers/TDTWriter.cpp +++ b/Code/GraphMol/FileParsers/TDTWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/TplFileParser.cpp b/Code/GraphMol/FileParsers/TplFileParser.cpp index 7a9394f76..1abd72cc9 100755 --- a/Code/GraphMol/FileParsers/TplFileParser.cpp +++ b/Code/GraphMol/FileParsers/TplFileParser.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007-2010 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FileParsers.h" diff --git a/Code/GraphMol/FileParsers/TplFileWriter.cpp b/Code/GraphMol/FileParsers/TplFileWriter.cpp index 4f69aabf8..a46467aef 100644 --- a/Code/GraphMol/FileParsers/TplFileWriter.cpp +++ b/Code/GraphMol/FileParsers/TplFileWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007-2008 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FileParsers.h" diff --git a/Code/GraphMol/FileParsers/test1.cpp b/Code/GraphMol/FileParsers/test1.cpp index cf571e9bc..4d2d180fb 100755 --- a/Code/GraphMol/FileParsers/test1.cpp +++ b/Code/GraphMol/FileParsers/test1.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2002-2010 Greg Landrum and Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/FileParsers/testMolSupplier.cpp b/Code/GraphMol/FileParsers/testMolSupplier.cpp index c520f8847..d532a9ec4 100755 --- a/Code/GraphMol/FileParsers/testMolSupplier.cpp +++ b/Code/GraphMol/FileParsers/testMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/testMolWriter.cpp b/Code/GraphMol/FileParsers/testMolWriter.cpp index b8f76e84b..4585b8bfe 100644 --- a/Code/GraphMol/FileParsers/testMolWriter.cpp +++ b/Code/GraphMol/FileParsers/testMolWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FileParsers/testTpls.cpp b/Code/GraphMol/FileParsers/testTpls.cpp index ab98f9652..0dbb503b7 100755 --- a/Code/GraphMol/FileParsers/testTpls.cpp +++ b/Code/GraphMol/FileParsers/testTpls.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2007 Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/FindRings.cpp b/Code/GraphMol/FindRings.cpp index cfba81980..cebe09cf3 100755 --- a/Code/GraphMol/FindRings.cpp +++ b/Code/GraphMol/FindRings.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDKitBase.h" #include diff --git a/Code/GraphMol/Fingerprints/AtomPairs.cpp b/Code/GraphMol/Fingerprints/AtomPairs.cpp index 50c64fa28..02827dea5 100644 --- a/Code/GraphMol/Fingerprints/AtomPairs.cpp +++ b/Code/GraphMol/Fingerprints/AtomPairs.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007-2010 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Fingerprints/AtomPairs.h b/Code/GraphMol/Fingerprints/AtomPairs.h index 8f28043fd..9286667c3 100644 --- a/Code/GraphMol/Fingerprints/AtomPairs.h +++ b/Code/GraphMol/Fingerprints/AtomPairs.h @@ -1,7 +1,11 @@ // // Copyright (C) 2007-2010 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file AtomPairs.h diff --git a/Code/GraphMol/Fingerprints/Fingerprints.cpp b/Code/GraphMol/Fingerprints/Fingerprints.cpp index 53a9df3ea..9546baa31 100755 --- a/Code/GraphMol/Fingerprints/Fingerprints.cpp +++ b/Code/GraphMol/Fingerprints/Fingerprints.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Fingerprints/Fingerprints.h b/Code/GraphMol/Fingerprints/Fingerprints.h index c3a6f20b8..45fbdbe1c 100644 --- a/Code/GraphMol/Fingerprints/Fingerprints.h +++ b/Code/GraphMol/Fingerprints/Fingerprints.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FINGERPRINTS_H_ #define _RD_FINGERPRINTS_H_ diff --git a/Code/GraphMol/Fingerprints/test1.cpp b/Code/GraphMol/Fingerprints/test1.cpp index 834a3b1c8..3d76a6a41 100755 --- a/Code/GraphMol/Fingerprints/test1.cpp +++ b/Code/GraphMol/Fingerprints/test1.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp b/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp index f195fb882..7f866374b 100644 --- a/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp +++ b/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h b/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h index 117da355f..beacd1f1c 100644 --- a/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h +++ b/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_UFFATOMTYPER_H__ #define _RD_UFFATOMTYPER_H__ diff --git a/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp b/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp index ac6fa4cd5..0c95151c8 100644 --- a/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp +++ b/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h b/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h index c565920a6..4cd006cca 100644 --- a/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h +++ b/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_UFFBUILDER_H_ #define _RD_UFFBUILDER_H_ diff --git a/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp b/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp index 52847945b..a34600fcd 100644 --- a/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp +++ b/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/ForceFieldHelpers/testHelpers.cpp b/Code/GraphMol/ForceFieldHelpers/testHelpers.cpp index 5b6ddb4a9..968575066 100644 --- a/Code/GraphMol/ForceFieldHelpers/testHelpers.cpp +++ b/Code/GraphMol/ForceFieldHelpers/testHelpers.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/FragCatalog/FragCatGenerator.cpp b/Code/GraphMol/FragCatalog/FragCatGenerator.cpp index 47545d5f3..90778571e 100644 --- a/Code/GraphMol/FragCatalog/FragCatGenerator.cpp +++ b/Code/GraphMol/FragCatalog/FragCatGenerator.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include "FragCatGenerator.h" diff --git a/Code/GraphMol/FragCatalog/FragCatGenerator.h b/Code/GraphMol/FragCatalog/FragCatGenerator.h index 6a794d4ae..4c0e9e353 100644 --- a/Code/GraphMol/FragCatalog/FragCatGenerator.h +++ b/Code/GraphMol/FragCatalog/FragCatGenerator.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FRAG_CAT_GENERATOR_H_ #define _RD_FRAG_CAT_GENRATOR_H_ diff --git a/Code/GraphMol/FragCatalog/FragCatParams.cpp b/Code/GraphMol/FragCatalog/FragCatParams.cpp index 055d35e8f..3105fbd32 100644 --- a/Code/GraphMol/FragCatalog/FragCatParams.cpp +++ b/Code/GraphMol/FragCatalog/FragCatParams.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FragCatParams.h" #include "FragCatalogUtils.h" diff --git a/Code/GraphMol/FragCatalog/FragCatParams.h b/Code/GraphMol/FragCatalog/FragCatParams.h index daf10d984..e8b5194bd 100644 --- a/Code/GraphMol/FragCatalog/FragCatParams.h +++ b/Code/GraphMol/FragCatalog/FragCatParams.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FRAG_CAT_PARAMS_H_ #define _RD_FRAG_CAT_PARAMS_H_ diff --git a/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp b/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp index 2e581de21..c0c2867b1 100644 --- a/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp +++ b/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FragCatalogEntry.h" diff --git a/Code/GraphMol/FragCatalog/FragCatalogEntry.h b/Code/GraphMol/FragCatalog/FragCatalogEntry.h index 657f16313..db1de779c 100644 --- a/Code/GraphMol/FragCatalog/FragCatalogEntry.h +++ b/Code/GraphMol/FragCatalog/FragCatalogEntry.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FRAGCATALOGENTRY_H_ #define _RD_FRAGCATALOGENTRY_H_ diff --git a/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp b/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp index dba8d281e..7be011d39 100644 --- a/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp +++ b/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // REVIEW: move this to a GraphMol/FuncGroups directory diff --git a/Code/GraphMol/FragCatalog/FragCatalogUtils.h b/Code/GraphMol/FragCatalog/FragCatalogUtils.h index e64b11a6e..84f133109 100644 --- a/Code/GraphMol/FragCatalog/FragCatalogUtils.h +++ b/Code/GraphMol/FragCatalog/FragCatalogUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FRAG_CATALOG_UTILS_H_ #define _RD_FRAG_CATALOG_UTILS_H_ diff --git a/Code/GraphMol/FragCatalog/FragFPGenerator.cpp b/Code/GraphMol/FragCatalog/FragFPGenerator.cpp index 352ada124..d31f29fda 100644 --- a/Code/GraphMol/FragCatalog/FragFPGenerator.cpp +++ b/Code/GraphMol/FragCatalog/FragFPGenerator.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include "FragFPGenerator.h" diff --git a/Code/GraphMol/FragCatalog/FragFPGenerator.h b/Code/GraphMol/FragCatalog/FragFPGenerator.h index 4963e2c58..e67395ce4 100644 --- a/Code/GraphMol/FragCatalog/FragFPGenerator.h +++ b/Code/GraphMol/FragCatalog/FragFPGenerator.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FRAG_FP_GENERATOR_H_ #define _RD_FRAG_FP_GENERATOR_H_ diff --git a/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp b/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp index 0ae88e4d5..4bad265ef 100644 --- a/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp +++ b/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp b/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp index d272234b4..6999bc8a4 100644 --- a/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp +++ b/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp b/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp index 63e4579c1..636abfb86 100644 --- a/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp +++ b/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp b/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp index 0bd820a1b..2611433a8 100644 --- a/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp +++ b/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp b/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp index bba8a958a..8ab362e9e 100644 --- a/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp +++ b/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "rdfragcatalog.h" #include diff --git a/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h b/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h index d44825776..7cbfbe602 100644 --- a/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h +++ b/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDFRAGCAT_INCL_ #define _RDFRAGCAT_INCL_ diff --git a/Code/GraphMol/FragCatalog/test1.cpp b/Code/GraphMol/FragCatalog/test1.cpp index 02423c35e..c09338ad3 100644 --- a/Code/GraphMol/FragCatalog/test1.cpp +++ b/Code/GraphMol/FragCatalog/test1.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/GraphMol.cpp b/Code/GraphMol/GraphMol.cpp index 2d60bcf6d..378203af5 100755 --- a/Code/GraphMol/GraphMol.cpp +++ b/Code/GraphMol/GraphMol.cpp @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "GraphMol.h" diff --git a/Code/GraphMol/GraphMol.h b/Code/GraphMol/GraphMol.h index 382d6f483..45c1bee63 100644 --- a/Code/GraphMol/GraphMol.h +++ b/Code/GraphMol/GraphMol.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file GraphMol.h diff --git a/Code/GraphMol/Kekulize.cpp b/Code/GraphMol/Kekulize.cpp index 9218b6c93..bdb9db2ec 100755 --- a/Code/GraphMol/Kekulize.cpp +++ b/Code/GraphMol/Kekulize.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Matrices.cpp b/Code/GraphMol/Matrices.cpp index d9ad78420..e5c7656f7 100755 --- a/Code/GraphMol/Matrices.cpp +++ b/Code/GraphMol/Matrices.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolAlign/AlignMolecules.cpp b/Code/GraphMol/MolAlign/AlignMolecules.cpp index 6c1d0010b..e1bae0770 100644 --- a/Code/GraphMol/MolAlign/AlignMolecules.cpp +++ b/Code/GraphMol/MolAlign/AlignMolecules.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "AlignMolecules.h" #include diff --git a/Code/GraphMol/MolAlign/AlignMolecules.h b/Code/GraphMol/MolAlign/AlignMolecules.h index 41e839873..5d3d28da8 100644 --- a/Code/GraphMol/MolAlign/AlignMolecules.h +++ b/Code/GraphMol/MolAlign/AlignMolecules.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_ALIGNMOLECULES_H_ #define _RD_ALIGNMOLECULES_H_ diff --git a/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp b/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp index 5f14e081d..a18281f48 100644 --- a/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp +++ b/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdmolalign_array_API #include diff --git a/Code/GraphMol/MolAlign/testMolAlign.cpp b/Code/GraphMol/MolAlign/testMolAlign.cpp index 854214bb7..645ef8f8c 100644 --- a/Code/GraphMol/MolAlign/testMolAlign.cpp +++ b/Code/GraphMol/MolAlign/testMolAlign.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "AlignMolecules.h" #include diff --git a/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp b/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp index 4cd057823..1ab79dce8 100644 --- a/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp +++ b/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2006-2008 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "MolCatalogEntry.h" diff --git a/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h b/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h index b6d060e48..7dc4fc6db 100644 --- a/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h +++ b/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.h @@ -1,7 +1,11 @@ // // Copyright (C) 2006 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDMOLCATALOG_WRAP_INCL_ #define _RDMOLCATALOG_WRAP_INCL_ diff --git a/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp b/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp index be4510b8a..e4d2c525b 100644 --- a/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp +++ b/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "FeatureParser.h" #include "MolChemicalFeatureDef.h" diff --git a/Code/GraphMol/MolChemicalFeatures/FeatureParser.h b/Code/GraphMol/MolChemicalFeatures/FeatureParser.h index 0aaa4f126..21c5bbbd6 100644 --- a/Code/GraphMol/MolChemicalFeatures/FeatureParser.h +++ b/Code/GraphMol/MolChemicalFeatures/FeatureParser.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __FEATUREPARSER_H_02122004_1810__ #define __FEATUREPARSER_H_02122004_1810__ diff --git a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp index 547d23963..7107eed61 100644 --- a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp +++ b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h index 7ce62ed68..b0a78b910 100644 --- a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h +++ b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __MOLCHEMICALFEATURE_H_11012005_1404__ #define __MOLCHEMICALFEATURE_H_11012005_1404__ diff --git a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp index 193e7faef..873ff8afe 100644 --- a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp +++ b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h index 053554e49..3b45459af 100644 --- a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h +++ b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __CHEMICALFEATUREDEF_H_02122004_1750__ #define __CHEMICALFEATUREDEF_H_02122004_1750__ diff --git a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp index b13c5c975..65c528549 100644 --- a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp +++ b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "MolChemicalFeature.h" #include "MolChemicalFeatureDef.h" diff --git a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h index d866b5d74..d5e0fdb1e 100644 --- a/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h +++ b/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __CHEMICALFEATUREFACTORY_H_02122004_1545__ #define __CHEMICALFEATUREFACTORY_H_02122004_1545__ diff --git a/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp b/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp index d2cf8c895..05e9fe7ad 100644 --- a/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp +++ b/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp b/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp index 929c88077..d475891a4 100644 --- a/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp +++ b/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp b/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp index 52a3de4ba..5ff285742 100644 --- a/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp +++ b/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp b/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp index 455fc8a8e..e336e68e4 100644 --- a/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp +++ b/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp b/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp index 9ab64aaf0..99273483a 100644 --- a/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp +++ b/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolDiscriminators.cpp b/Code/GraphMol/MolDiscriminators.cpp index 2da882ec2..d16efb744 100755 --- a/Code/GraphMol/MolDiscriminators.cpp +++ b/Code/GraphMol/MolDiscriminators.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "MolOps.h" #include "RDKitBase.h" diff --git a/Code/GraphMol/MolOps.cpp b/Code/GraphMol/MolOps.cpp index 4d2085230..1f2e072a5 100755 --- a/Code/GraphMol/MolOps.cpp +++ b/Code/GraphMol/MolOps.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolOps.h b/Code/GraphMol/MolOps.h index 55e0b2db1..bae7e78dd 100644 --- a/Code/GraphMol/MolOps.h +++ b/Code/GraphMol/MolOps.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOL_OPS_H_ #define _RD_MOL_OPS_H_ diff --git a/Code/GraphMol/MolPickler.cpp b/Code/GraphMol/MolPickler.cpp index 2b3c205c6..f23e552c1 100755 --- a/Code/GraphMol/MolPickler.cpp +++ b/Code/GraphMol/MolPickler.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/MolPickler.h b/Code/GraphMol/MolPickler.h index f66a601aa..24db48564 100644 --- a/Code/GraphMol/MolPickler.h +++ b/Code/GraphMol/MolPickler.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOLPICKLE_H #define _RD_MOLPICKLE_H diff --git a/Code/GraphMol/MolTransforms/MolTransforms.cpp b/Code/GraphMol/MolTransforms/MolTransforms.cpp index 40b50bc12..0e98341c4 100755 --- a/Code/GraphMol/MolTransforms/MolTransforms.cpp +++ b/Code/GraphMol/MolTransforms/MolTransforms.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "MolTransforms.h" #include diff --git a/Code/GraphMol/MolTransforms/MolTransforms.h b/Code/GraphMol/MolTransforms/MolTransforms.h index e6d129123..94b801b2f 100644 --- a/Code/GraphMol/MolTransforms/MolTransforms.h +++ b/Code/GraphMol/MolTransforms/MolTransforms.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_MOLTRANSFORMS_H_ #define _RD_MOLTRANSFORMS_H_ diff --git a/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp b/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp index eb6ea4297..65682fc6e 100644 --- a/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp +++ b/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdmoltransforms_array_API #include diff --git a/Code/GraphMol/MolTransforms/test1.cpp b/Code/GraphMol/MolTransforms/test1.cpp index 02de345f6..6e677848c 100755 --- a/Code/GraphMol/MolTransforms/test1.cpp +++ b/Code/GraphMol/MolTransforms/test1.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/PartialCharges/GasteigerCharges.cpp b/Code/GraphMol/PartialCharges/GasteigerCharges.cpp index 5982a7034..fd4014f6c 100755 --- a/Code/GraphMol/PartialCharges/GasteigerCharges.cpp +++ b/Code/GraphMol/PartialCharges/GasteigerCharges.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "GasteigerCharges.h" #include diff --git a/Code/GraphMol/PartialCharges/GasteigerCharges.h b/Code/GraphMol/PartialCharges/GasteigerCharges.h index ba65f0ca3..3ace80393 100644 --- a/Code/GraphMol/PartialCharges/GasteigerCharges.h +++ b/Code/GraphMol/PartialCharges/GasteigerCharges.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_GASTEIGERCHARGES_H #define _RD_GASTEIGERCHARGES_H diff --git a/Code/GraphMol/PartialCharges/GasteigerParams.cpp b/Code/GraphMol/PartialCharges/GasteigerParams.cpp index e5c224a7d..1ba0eca77 100755 --- a/Code/GraphMol/PartialCharges/GasteigerParams.cpp +++ b/Code/GraphMol/PartialCharges/GasteigerParams.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include typedef boost::tokenizer > tokenizer; diff --git a/Code/GraphMol/PartialCharges/GasteigerParams.h b/Code/GraphMol/PartialCharges/GasteigerParams.h index 840cd53c4..de3e1a319 100644 --- a/Code/GraphMol/PartialCharges/GasteigerParams.h +++ b/Code/GraphMol/PartialCharges/GasteigerParams.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_GASTEIGERPARAMS_H #define _RD_GASTEIGERPARAMS_H diff --git a/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp b/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp index b6f940dc9..06aecebad 100755 --- a/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp +++ b/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/PeriodicTable.cpp b/Code/GraphMol/PeriodicTable.cpp index d804339d0..16fa08109 100755 --- a/Code/GraphMol/PeriodicTable.cpp +++ b/Code/GraphMol/PeriodicTable.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "PeriodicTable.h" #include diff --git a/Code/GraphMol/PeriodicTable.h b/Code/GraphMol/PeriodicTable.h index a115fb6aa..4a94110b3 100644 --- a/Code/GraphMol/PeriodicTable.h +++ b/Code/GraphMol/PeriodicTable.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_PERIODIC_TABLE_H #define _RD_PERIODIC_TABLE_H diff --git a/Code/GraphMol/QueryAtom.cpp b/Code/GraphMol/QueryAtom.cpp index d2a564f69..2eb172a28 100755 --- a/Code/GraphMol/QueryAtom.cpp +++ b/Code/GraphMol/QueryAtom.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/QueryAtom.h b/Code/GraphMol/QueryAtom.h index e9f64c57e..eadb14bb9 100644 --- a/Code/GraphMol/QueryAtom.h +++ b/Code/GraphMol/QueryAtom.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_QUERYATOM_H_ #define _RD_QUERYATOM_H_ diff --git a/Code/GraphMol/QueryBond.cpp b/Code/GraphMol/QueryBond.cpp index fb62ad567..f1900b1ca 100755 --- a/Code/GraphMol/QueryBond.cpp +++ b/Code/GraphMol/QueryBond.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/QueryBond.h b/Code/GraphMol/QueryBond.h index d74059d24..961298af1 100644 --- a/Code/GraphMol/QueryBond.h +++ b/Code/GraphMol/QueryBond.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_QUERYBOND_H #define _RD_QUERYBOND_H diff --git a/Code/GraphMol/QueryOps.cpp b/Code/GraphMol/QueryOps.cpp index 04e135900..6fe92ca39 100755 --- a/Code/GraphMol/QueryOps.cpp +++ b/Code/GraphMol/QueryOps.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "QueryOps.h" #include diff --git a/Code/GraphMol/QueryOps.h b/Code/GraphMol/QueryOps.h index e741a0902..612c6f664 100644 --- a/Code/GraphMol/QueryOps.h +++ b/Code/GraphMol/QueryOps.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // //! \file QueryOps.h diff --git a/Code/GraphMol/RDKitBase.h b/Code/GraphMol/RDKitBase.h index 535738b5e..c8f395923 100644 --- a/Code/GraphMol/RDKitBase.h +++ b/Code/GraphMol/RDKitBase.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file RDKitBase.h diff --git a/Code/GraphMol/RDKitQueries.h b/Code/GraphMol/RDKitQueries.h index 1f7f22bbe..e8419c8c6 100644 --- a/Code/GraphMol/RDKitQueries.h +++ b/Code/GraphMol/RDKitQueries.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file RDKitQueries.h diff --git a/Code/GraphMol/ROMol.cpp b/Code/GraphMol/ROMol.cpp index b25955633..7db4ddeea 100755 --- a/Code/GraphMol/ROMol.cpp +++ b/Code/GraphMol/ROMol.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/ROMol.h b/Code/GraphMol/ROMol.h index bd755b143..a7ea70060 100644 --- a/Code/GraphMol/ROMol.h +++ b/Code/GraphMol/ROMol.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file ROMol.h diff --git a/Code/GraphMol/RWMol.cpp b/Code/GraphMol/RWMol.cpp index d4011e9ce..d1be03ce7 100755 --- a/Code/GraphMol/RWMol.cpp +++ b/Code/GraphMol/RWMol.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/RWMol.h b/Code/GraphMol/RWMol.h index ca3b657d5..2b234acf5 100644 --- a/Code/GraphMol/RWMol.h +++ b/Code/GraphMol/RWMol.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file RWMol.h diff --git a/Code/GraphMol/RankAtoms.cpp b/Code/GraphMol/RankAtoms.cpp index 4798e7226..773583495 100755 --- a/Code/GraphMol/RankAtoms.cpp +++ b/Code/GraphMol/RankAtoms.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/RankAtoms.h b/Code/GraphMol/RankAtoms.h index a03074499..767d35de7 100644 --- a/Code/GraphMol/RankAtoms.h +++ b/Code/GraphMol/RankAtoms.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // //! \file RankAtoms.h diff --git a/Code/GraphMol/RingInfo.cpp b/Code/GraphMol/RingInfo.cpp index 016b7f845..36a556765 100644 --- a/Code/GraphMol/RingInfo.cpp +++ b/Code/GraphMol/RingInfo.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RingInfo.h" #include diff --git a/Code/GraphMol/RingInfo.h b/Code/GraphMol/RingInfo.h index a80c373ae..c7efaa9a7 100644 --- a/Code/GraphMol/RingInfo.h +++ b/Code/GraphMol/RingInfo.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_RINGINFO_H #define _RD_RINGINFO_H diff --git a/Code/GraphMol/Rings.h b/Code/GraphMol/Rings.h index 333dfd1a4..79d61613b 100644 --- a/Code/GraphMol/Rings.h +++ b/Code/GraphMol/Rings.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // //! \file Rings.h diff --git a/Code/GraphMol/SanitException.h b/Code/GraphMol/SanitException.h index ff3bc9143..e1a82d5f3 100644 --- a/Code/GraphMol/SanitException.h +++ b/Code/GraphMol/SanitException.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SANITEXCEPTION_H diff --git a/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp b/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp index fae5df2fd..0f76702ee 100644 --- a/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp +++ b/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/ShapeHelpers/ShapeEncoder.h b/Code/GraphMol/ShapeHelpers/ShapeEncoder.h index 45f46983a..97341e696 100644 --- a/Code/GraphMol/ShapeHelpers/ShapeEncoder.h +++ b/Code/GraphMol/ShapeHelpers/ShapeEncoder.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SHAPE_ENCODER_H_20050125_0800_ #define _RD_SHAPE_ENCODER_H_20050125_0800_ diff --git a/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp b/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp index e6d26945a..814fb6577 100644 --- a/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp +++ b/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "ShapeUtils.h" #include "ShapeEncoder.h" diff --git a/Code/GraphMol/ShapeHelpers/ShapeUtils.h b/Code/GraphMol/ShapeHelpers/ShapeUtils.h index 737d079c1..58b38691f 100644 --- a/Code/GraphMol/ShapeHelpers/ShapeUtils.h +++ b/Code/GraphMol/ShapeHelpers/ShapeUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SHAPE_UTILS_H_20050128_ #define _RD_SHAPE_UTILS_H_20050128_ diff --git a/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp b/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp index 5a459e618..a2926c79c 100644 --- a/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp +++ b/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdshapehelpers_array_API #include diff --git a/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp b/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp index dcefb69f4..3520838a2 100644 --- a/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp +++ b/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/SmilesParse/SmartsWrite.cpp b/Code/GraphMol/SmilesParse/SmartsWrite.cpp index 5e8797f37..8917c12e1 100644 --- a/Code/GraphMol/SmilesParse/SmartsWrite.cpp +++ b/Code/GraphMol/SmilesParse/SmartsWrite.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "SmartsWrite.h" #include diff --git a/Code/GraphMol/SmilesParse/SmartsWrite.h b/Code/GraphMol/SmilesParse/SmartsWrite.h index 264b8f1bd..0ea7531ae 100644 --- a/Code/GraphMol/SmilesParse/SmartsWrite.h +++ b/Code/GraphMol/SmilesParse/SmartsWrite.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SMARTSWRITE_H #define _RD_SMARTSWRITE_H diff --git a/Code/GraphMol/SmilesParse/SmilesParse.cpp b/Code/GraphMol/SmilesParse/SmilesParse.cpp index 3c39388fc..78bc42956 100755 --- a/Code/GraphMol/SmilesParse/SmilesParse.cpp +++ b/Code/GraphMol/SmilesParse/SmilesParse.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // ---------------------------------------------------------------------------------- diff --git a/Code/GraphMol/SmilesParse/SmilesParse.h b/Code/GraphMol/SmilesParse/SmilesParse.h index da9471cdc..fd727c632 100644 --- a/Code/GraphMol/SmilesParse/SmilesParse.h +++ b/Code/GraphMol/SmilesParse/SmilesParse.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SMILESPARSE_H_ #define _RD_SMILESPARSE_H_ diff --git a/Code/GraphMol/SmilesParse/SmilesParseOps.cpp b/Code/GraphMol/SmilesParse/SmilesParseOps.cpp index 5ccd0f4d1..0cd4a62f9 100755 --- a/Code/GraphMol/SmilesParse/SmilesParseOps.cpp +++ b/Code/GraphMol/SmilesParse/SmilesParseOps.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/SmilesParse/SmilesParseOps.h b/Code/GraphMol/SmilesParse/SmilesParseOps.h index 7389d6627..3ceab7b9f 100644 --- a/Code/GraphMol/SmilesParse/SmilesParseOps.h +++ b/Code/GraphMol/SmilesParse/SmilesParseOps.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SMILESPARSEOPS_H #define _RD_SMILESPARSEOPS_H diff --git a/Code/GraphMol/SmilesParse/SmilesWrite.cpp b/Code/GraphMol/SmilesParse/SmilesWrite.cpp index 7f2125194..1fe557de0 100755 --- a/Code/GraphMol/SmilesParse/SmilesWrite.cpp +++ b/Code/GraphMol/SmilesParse/SmilesWrite.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "SmilesWrite.h" #include diff --git a/Code/GraphMol/SmilesParse/SmilesWrite.h b/Code/GraphMol/SmilesParse/SmilesWrite.h index 7a8cb162b..0a818ff38 100644 --- a/Code/GraphMol/SmilesParse/SmilesWrite.h +++ b/Code/GraphMol/SmilesParse/SmilesWrite.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SMILESWRITE_H #define _RD_SMILESWRITE_H diff --git a/Code/GraphMol/SmilesParse/main.cpp b/Code/GraphMol/SmilesParse/main.cpp index 673ccd3fb..800f73d66 100755 --- a/Code/GraphMol/SmilesParse/main.cpp +++ b/Code/GraphMol/SmilesParse/main.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2006 Randal Henne, Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/SmilesParse/primes.h b/Code/GraphMol/SmilesParse/primes.h index 64d7bc78f..2a92fb8d3 100644 --- a/Code/GraphMol/SmilesParse/primes.h +++ b/Code/GraphMol/SmilesParse/primes.h @@ -1,7 +1,11 @@ // // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_PRIMES_H #define _RD_PRIMES_H diff --git a/Code/GraphMol/SmilesParse/smamain.cpp b/Code/GraphMol/SmilesParse/smamain.cpp index 27d70c320..467b9cd3f 100755 --- a/Code/GraphMol/SmilesParse/smamain.cpp +++ b/Code/GraphMol/SmilesParse/smamain.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2006 Randal Henne, Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include "SmilesParse.h" diff --git a/Code/GraphMol/SmilesParse/smatest.cpp b/Code/GraphMol/SmilesParse/smatest.cpp index 14614e9d8..0506df867 100755 --- a/Code/GraphMol/SmilesParse/smatest.cpp +++ b/Code/GraphMol/SmilesParse/smatest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/SmilesParse/test.cpp b/Code/GraphMol/SmilesParse/test.cpp index 538281b9d..914827604 100755 --- a/Code/GraphMol/SmilesParse/test.cpp +++ b/Code/GraphMol/SmilesParse/test.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Subgraphs/SubgraphUtils.cpp b/Code/GraphMol/Subgraphs/SubgraphUtils.cpp index 1eb494009..f2269fb5b 100755 --- a/Code/GraphMol/Subgraphs/SubgraphUtils.cpp +++ b/Code/GraphMol/Subgraphs/SubgraphUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "SubgraphUtils.h" #include "Subgraphs.h" diff --git a/Code/GraphMol/Subgraphs/SubgraphUtils.h b/Code/GraphMol/Subgraphs/SubgraphUtils.h index 528e0f5a6..6b77193a5 100644 --- a/Code/GraphMol/Subgraphs/SubgraphUtils.h +++ b/Code/GraphMol/Subgraphs/SubgraphUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SUBGRAPHUTILS_H_ #define _RD_SUBGRAPHUTILS_H_ diff --git a/Code/GraphMol/Subgraphs/Subgraphs.cpp b/Code/GraphMol/Subgraphs/Subgraphs.cpp index 55e465436..d3b8c6acc 100755 --- a/Code/GraphMol/Subgraphs/Subgraphs.cpp +++ b/Code/GraphMol/Subgraphs/Subgraphs.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/Subgraphs/Subgraphs.h b/Code/GraphMol/Subgraphs/Subgraphs.h index c39adba1e..8baaa3d44 100644 --- a/Code/GraphMol/Subgraphs/Subgraphs.h +++ b/Code/GraphMol/Subgraphs/Subgraphs.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file Subgraphs.h diff --git a/Code/GraphMol/Subgraphs/test1.cpp b/Code/GraphMol/Subgraphs/test1.cpp index b49d9edc6..56921d6ab 100755 --- a/Code/GraphMol/Subgraphs/test1.cpp +++ b/Code/GraphMol/Subgraphs/test1.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Subgraphs/test2.cpp b/Code/GraphMol/Subgraphs/test2.cpp index 8f5e8ec19..1bacac750 100755 --- a/Code/GraphMol/Subgraphs/test2.cpp +++ b/Code/GraphMol/Subgraphs/test2.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Substruct/SubstructMatch.cpp b/Code/GraphMol/Substruct/SubstructMatch.cpp index a30fa71a2..ec77680f3 100755 --- a/Code/GraphMol/Substruct/SubstructMatch.cpp +++ b/Code/GraphMol/Substruct/SubstructMatch.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/Substruct/SubstructMatch.h b/Code/GraphMol/Substruct/SubstructMatch.h index cad4876cb..a5d1c76a5 100644 --- a/Code/GraphMol/Substruct/SubstructMatch.h +++ b/Code/GraphMol/Substruct/SubstructMatch.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SUBSTRUCTMATCH_H__ #define _RD_SUBSTRUCTMATCH_H__ diff --git a/Code/GraphMol/Substruct/SubstructUtils.cpp b/Code/GraphMol/Substruct/SubstructUtils.cpp index 7137d7390..fd1245c5f 100755 --- a/Code/GraphMol/Substruct/SubstructUtils.cpp +++ b/Code/GraphMol/Substruct/SubstructUtils.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "SubstructUtils.h" #include diff --git a/Code/GraphMol/Substruct/SubstructUtils.h b/Code/GraphMol/Substruct/SubstructUtils.h index d026a477f..01d736042 100644 --- a/Code/GraphMol/Substruct/SubstructUtils.h +++ b/Code/GraphMol/Substruct/SubstructUtils.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_SUBSTRUCT_UTILS_H_ #define _RD_SUBSTRUCT_UTILS_H_ diff --git a/Code/GraphMol/Substruct/bench.cpp b/Code/GraphMol/Substruct/bench.cpp index 4b18c9e9c..2ff09b9f8 100755 --- a/Code/GraphMol/Substruct/bench.cpp +++ b/Code/GraphMol/Substruct/bench.cpp @@ -1,7 +1,11 @@ // // Copyright (C) 2001,2003 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifdef WIN32 #pragma warning (disable: 4786) // warning: long & complicated stl warning diff --git a/Code/GraphMol/Substruct/cmd_match.cpp b/Code/GraphMol/Substruct/cmd_match.cpp index 878cacaef..56e69552b 100755 --- a/Code/GraphMol/Substruct/cmd_match.cpp +++ b/Code/GraphMol/Substruct/cmd_match.cpp @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2005 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // std bits diff --git a/Code/GraphMol/Substruct/test1.cpp b/Code/GraphMol/Substruct/test1.cpp index 3fdad9cad..c6a6cc21e 100755 --- a/Code/GraphMol/Substruct/test1.cpp +++ b/Code/GraphMol/Substruct/test1.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // diff --git a/Code/GraphMol/Wrap/Atom.cpp b/Code/GraphMol/Wrap/Atom.cpp index 0149da125..9f6ff5f3d 100755 --- a/Code/GraphMol/Wrap/Atom.cpp +++ b/Code/GraphMol/Wrap/Atom.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/Bond.cpp b/Code/GraphMol/Wrap/Bond.cpp index f2633dd4e..21b9371a5 100755 --- a/Code/GraphMol/Wrap/Bond.cpp +++ b/Code/GraphMol/Wrap/Bond.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/CompressedSDMolSupplier.cpp b/Code/GraphMol/Wrap/CompressedSDMolSupplier.cpp index 4c8f513a6..7a7386ebb 100644 --- a/Code/GraphMol/Wrap/CompressedSDMolSupplier.cpp +++ b/Code/GraphMol/Wrap/CompressedSDMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2009 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/Conformer.cpp b/Code/GraphMol/Wrap/Conformer.cpp index 73fed9758..ab21e01ce 100644 --- a/Code/GraphMol/Wrap/Conformer.cpp +++ b/Code/GraphMol/Wrap/Conformer.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/EditableMol.cpp b/Code/GraphMol/Wrap/EditableMol.cpp index ab5017197..8f4f816a6 100755 --- a/Code/GraphMol/Wrap/EditableMol.cpp +++ b/Code/GraphMol/Wrap/EditableMol.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/Wrap/Mol.cpp b/Code/GraphMol/Wrap/Mol.cpp index 9315228b2..f39e54863 100755 --- a/Code/GraphMol/Wrap/Mol.cpp +++ b/Code/GraphMol/Wrap/Mol.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/Wrap/MolOps.cpp b/Code/GraphMol/Wrap/MolOps.cpp index bd3bd9a7d..7a7f1c9f8 100755 --- a/Code/GraphMol/Wrap/MolOps.cpp +++ b/Code/GraphMol/Wrap/MolOps.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2009 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include "rdmolops.h" diff --git a/Code/GraphMol/Wrap/MolSupplier.h b/Code/GraphMol/Wrap/MolSupplier.h index e4b51c239..46713c9d7 100644 --- a/Code/GraphMol/Wrap/MolSupplier.h +++ b/Code/GraphMol/Wrap/MolSupplier.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2008 Greg Landrumm and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_WRAP_MOLSUPPLIER_H_ #define _RD_WRAP_MOLSUPPLIER_H_ diff --git a/Code/GraphMol/Wrap/Queries.cpp b/Code/GraphMol/Wrap/Queries.cpp index 3b93f2ed9..0dd5ab029 100755 --- a/Code/GraphMol/Wrap/Queries.cpp +++ b/Code/GraphMol/Wrap/Queries.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/Wrap/RingInfo.cpp b/Code/GraphMol/Wrap/RingInfo.cpp index a8a642080..f63b144b0 100644 --- a/Code/GraphMol/Wrap/RingInfo.cpp +++ b/Code/GraphMol/Wrap/RingInfo.cpp @@ -2,7 +2,11 @@ // // Created by Greg Landrum: January 2007 // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/SDMolSupplier.cpp b/Code/GraphMol/Wrap/SDMolSupplier.cpp index 024ca9187..798c120f0 100755 --- a/Code/GraphMol/Wrap/SDMolSupplier.cpp +++ b/Code/GraphMol/Wrap/SDMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/SDWriter.cpp b/Code/GraphMol/Wrap/SDWriter.cpp index 6da4c0980..f5e0eead9 100755 --- a/Code/GraphMol/Wrap/SDWriter.cpp +++ b/Code/GraphMol/Wrap/SDWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/SmilesMolSupplier.cpp b/Code/GraphMol/Wrap/SmilesMolSupplier.cpp index 0e51e74ba..75b4419fb 100755 --- a/Code/GraphMol/Wrap/SmilesMolSupplier.cpp +++ b/Code/GraphMol/Wrap/SmilesMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/SmilesWriter.cpp b/Code/GraphMol/Wrap/SmilesWriter.cpp index cbee9290e..182607c41 100755 --- a/Code/GraphMol/Wrap/SmilesWriter.cpp +++ b/Code/GraphMol/Wrap/SmilesWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/Wrap/TDTMolSupplier.cpp b/Code/GraphMol/Wrap/TDTMolSupplier.cpp index d9407e7ba..08e926579 100644 --- a/Code/GraphMol/Wrap/TDTMolSupplier.cpp +++ b/Code/GraphMol/Wrap/TDTMolSupplier.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY #include diff --git a/Code/GraphMol/Wrap/TDTWriter.cpp b/Code/GraphMol/Wrap/TDTWriter.cpp index 81b0aacb1..d34d08b9f 100644 --- a/Code/GraphMol/Wrap/TDTWriter.cpp +++ b/Code/GraphMol/Wrap/TDTWriter.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2010 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/Table.cpp b/Code/GraphMol/Wrap/Table.cpp index 83d8efe32..13db33242 100755 --- a/Code/GraphMol/Wrap/Table.cpp +++ b/Code/GraphMol/Wrap/Table.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/GraphMol/Wrap/rdchem.cpp b/Code/GraphMol/Wrap/rdchem.cpp index 173113a98..4f54159f4 100755 --- a/Code/GraphMol/Wrap/rdchem.cpp +++ b/Code/GraphMol/Wrap/rdchem.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdchem_array_API #include diff --git a/Code/GraphMol/Wrap/rdchem.h b/Code/GraphMol/Wrap/rdchem.h index d127f35b5..1b21ca505 100644 --- a/Code/GraphMol/Wrap/rdchem.h +++ b/Code/GraphMol/Wrap/rdchem.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDCHEM_INCL_ #define _RDCHEM_INCL_ diff --git a/Code/GraphMol/Wrap/rdmolfiles.cpp b/Code/GraphMol/Wrap/rdmolfiles.cpp index ed0b8abc9..92f5640ec 100644 --- a/Code/GraphMol/Wrap/rdmolfiles.cpp +++ b/Code/GraphMol/Wrap/rdmolfiles.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "rdmolops.h" #include diff --git a/Code/GraphMol/Wrap/rdmolfiles.h b/Code/GraphMol/Wrap/rdmolfiles.h index b86e78d92..c115693e2 100644 --- a/Code/GraphMol/Wrap/rdmolfiles.h +++ b/Code/GraphMol/Wrap/rdmolfiles.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDMOLFILES_INCL_ #define _RDMOLFILES_INCL_ diff --git a/Code/GraphMol/Wrap/rdmolops.cpp b/Code/GraphMol/Wrap/rdmolops.cpp index 7279a3aa5..e322df5a4 100755 --- a/Code/GraphMol/Wrap/rdmolops.cpp +++ b/Code/GraphMol/Wrap/rdmolops.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "rdmolops.h" diff --git a/Code/GraphMol/Wrap/rdmolops.h b/Code/GraphMol/Wrap/rdmolops.h index 41d45d935..0b254fae1 100644 --- a/Code/GraphMol/Wrap/rdmolops.h +++ b/Code/GraphMol/Wrap/rdmolops.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDMOLOPS_INCL_ #define _RDMOLOPS_INCL_ diff --git a/Code/GraphMol/atomic_data.cpp b/Code/GraphMol/atomic_data.cpp index e149f1107..55c7efd1a 100644 --- a/Code/GraphMol/atomic_data.cpp +++ b/Code/GraphMol/atomic_data.cpp @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // Automatically generated from elements.txt diff --git a/Code/GraphMol/atomic_data.h b/Code/GraphMol/atomic_data.h index f982c0435..e1d867df8 100644 --- a/Code/GraphMol/atomic_data.h +++ b/Code/GraphMol/atomic_data.h @@ -1,7 +1,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file atomic_data.h diff --git a/Code/GraphMol/bulktest.cpp b/Code/GraphMol/bulktest.cpp index f06a6a424..75dd63fe0 100644 --- a/Code/GraphMol/bulktest.cpp +++ b/Code/GraphMol/bulktest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/cptest.cpp b/Code/GraphMol/cptest.cpp index 8db591957..8455d504a 100755 --- a/Code/GraphMol/cptest.cpp +++ b/Code/GraphMol/cptest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/itertest.cpp b/Code/GraphMol/itertest.cpp index f14b6676c..652ffc422 100755 --- a/Code/GraphMol/itertest.cpp +++ b/Code/GraphMol/itertest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/molopstest.cpp b/Code/GraphMol/molopstest.cpp index a22dbb5b1..361d5374e 100755 --- a/Code/GraphMol/molopstest.cpp +++ b/Code/GraphMol/molopstest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2010 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/querytest.cpp b/Code/GraphMol/querytest.cpp index 94e7672d7..a93b6ce4e 100755 --- a/Code/GraphMol/querytest.cpp +++ b/Code/GraphMol/querytest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/sanitTest.cpp b/Code/GraphMol/sanitTest.cpp index df40dcfc4..ecbaeb957 100755 --- a/Code/GraphMol/sanitTest.cpp +++ b/Code/GraphMol/sanitTest.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2002-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/test1.cpp b/Code/GraphMol/test1.cpp index 9a7b83722..04f06d0d2 100755 --- a/Code/GraphMol/test1.cpp +++ b/Code/GraphMol/test1.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2001-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include diff --git a/Code/GraphMol/testCanon.cpp b/Code/GraphMol/testCanon.cpp index bd18eed80..1e291b77d 100755 --- a/Code/GraphMol/testCanon.cpp +++ b/Code/GraphMol/testCanon.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/GraphMol/testChirality.cpp b/Code/GraphMol/testChirality.cpp index c3c237e10..e2ecfc351 100755 --- a/Code/GraphMol/testChirality.cpp +++ b/Code/GraphMol/testChirality.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2007-2010 Greg Landrum // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // // There are chirality test cases spread all over the place. Many of the diff --git a/Code/GraphMol/testPickler.cpp b/Code/GraphMol/testPickler.cpp index 6610c1906..c5f4dc3f8 100644 --- a/Code/GraphMol/testPickler.cpp +++ b/Code/GraphMol/testPickler.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/ML/Cluster/Murtagh/Clustering.cpp b/Code/ML/Cluster/Murtagh/Clustering.cpp index e38039463..658a5ec05 100644 --- a/Code/ML/Cluster/Murtagh/Clustering.cpp +++ b/Code/ML/Cluster/Murtagh/Clustering.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2002-2010 Greg Landrum and Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifdef WIN32 #define CALGORITHMS_EXPORTS diff --git a/Code/ML/Data/cQuantize.cpp b/Code/ML/Data/cQuantize.cpp index cc3b4e24f..0710a69e7 100644 --- a/Code/ML/Data/cQuantize.cpp +++ b/Code/ML/Data/cQuantize.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright 2003-2008 Rational Discovery LLC and Greg Landrum -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifdef WIN32 #define CQUANTIZE_EXPORTS diff --git a/Code/ML/FeatureSelect/Wrap/rdFeatSelect.cpp b/Code/ML/FeatureSelect/Wrap/rdFeatSelect.cpp index bef70c160..1b5f5121f 100644 --- a/Code/ML/FeatureSelect/Wrap/rdFeatSelect.cpp +++ b/Code/ML/FeatureSelect/Wrap/rdFeatSelect.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2005-2006 Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/ML/InfoTheory/CorrMatGenerator.h b/Code/ML/InfoTheory/CorrMatGenerator.h index 40c2d8f4d..5abe8fb76 100644 --- a/Code/ML/InfoTheory/CorrMatGenerator.h +++ b/Code/ML/InfoTheory/CorrMatGenerator.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_CORRMATGENERATOR_H_ #define _RD_CORRMATGENERATOR_H_ diff --git a/Code/ML/InfoTheory/InfoBitRanker.cpp b/Code/ML/InfoTheory/InfoBitRanker.cpp index 10801a042..f110ccff8 100644 --- a/Code/ML/InfoTheory/InfoBitRanker.cpp +++ b/Code/ML/InfoTheory/InfoBitRanker.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC -// @All Rights Reserved@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "InfoBitRanker.h" diff --git a/Code/ML/InfoTheory/InfoBitRanker.h b/Code/ML/InfoTheory/InfoBitRanker.h index 37cea16d3..742f3e483 100644 --- a/Code/ML/InfoTheory/InfoBitRanker.h +++ b/Code/ML/InfoTheory/InfoBitRanker.h @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2007 Greg Landrum and Rational Discovery LLC -// @All Rights Reserved@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_INFORANKER_H_ diff --git a/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp b/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp index dc0f9ada8..2b47852a9 100644 --- a/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp +++ b/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // diff --git a/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp b/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp index e4d0b37be..490bc3fac 100644 --- a/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp +++ b/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp b/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp index 10ee591a6..ce74c99e8 100644 --- a/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp +++ b/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdinfotheory_array_API #include diff --git a/Code/ML/InfoTheory/cEntropy.cpp b/Code/ML/InfoTheory/cEntropy.cpp index 906dfb1f3..60f78971a 100644 --- a/Code/ML/InfoTheory/cEntropy.cpp +++ b/Code/ML/InfoTheory/cEntropy.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2001-2008 greg Landrum and Rational Discovery LLC -// All Rights Reserved +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifdef WIN32 #define CENTROPY_EXPORTS diff --git a/Code/Numerics/Alignment/AlignPoints.cpp b/Code/Numerics/Alignment/AlignPoints.cpp index 7f745e473..6d252312e 100644 --- a/Code/Numerics/Alignment/AlignPoints.cpp +++ b/Code/Numerics/Alignment/AlignPoints.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "AlignPoints.h" #include diff --git a/Code/Numerics/Alignment/AlignPoints.h b/Code/Numerics/Alignment/AlignPoints.h index af35c8501..2fc1dfb42 100644 --- a/Code/Numerics/Alignment/AlignPoints.h +++ b/Code/Numerics/Alignment/AlignPoints.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_ALIGN_POINTS_H__ #define __RD_ALIGN_POINTS_H__ diff --git a/Code/Numerics/Alignment/Wrap/rdAlignment.cpp b/Code/Numerics/Alignment/Wrap/rdAlignment.cpp index 86c6fd4b7..e2e30aca7 100644 --- a/Code/Numerics/Alignment/Wrap/rdAlignment.cpp +++ b/Code/Numerics/Alignment/Wrap/rdAlignment.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdalignment_array_API #include diff --git a/Code/Numerics/Alignment/testAlignment.cpp b/Code/Numerics/Alignment/testAlignment.cpp index 9323e0081..87a2b6a8a 100644 --- a/Code/Numerics/Alignment/testAlignment.cpp +++ b/Code/Numerics/Alignment/testAlignment.cpp @@ -1,7 +1,11 @@ // $Id$ // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "AlignPoints.h" #include diff --git a/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp b/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp index 99ede9faa..237b1f6e9 100644 --- a/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp +++ b/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "PowerEigenSolver.h" #include diff --git a/Code/Numerics/EigenSolvers/PowerEigenSolver.h b/Code/Numerics/EigenSolvers/PowerEigenSolver.h index a761a0d37..0e7624ad8 100644 --- a/Code/Numerics/EigenSolvers/PowerEigenSolver.h +++ b/Code/Numerics/EigenSolvers/PowerEigenSolver.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_POWER_EIGENSOLVER_H diff --git a/Code/Numerics/EigenSolvers/testEigenSolvers.cpp b/Code/Numerics/EigenSolvers/testEigenSolvers.cpp index fba5de3d0..835faa8b7 100644 --- a/Code/Numerics/EigenSolvers/testEigenSolvers.cpp +++ b/Code/Numerics/EigenSolvers/testEigenSolvers.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "PowerEigenSolver.h" #include diff --git a/Code/Numerics/Matrix.h b/Code/Numerics/Matrix.h index 9f2da2485..6fb7385a3 100644 --- a/Code/Numerics/Matrix.h +++ b/Code/Numerics/Matrix.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_MATRIX_H__ #define __RD_MATRIX_H__ diff --git a/Code/Numerics/Optimizer/BFGSOpt.cpp b/Code/Numerics/Optimizer/BFGSOpt.cpp index 5587641aa..9be397b46 100644 --- a/Code/Numerics/Optimizer/BFGSOpt.cpp +++ b/Code/Numerics/Optimizer/BFGSOpt.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Numerics/Optimizer/BFGSOpt.h b/Code/Numerics/Optimizer/BFGSOpt.h index 547398ecc..34adca52d 100644 --- a/Code/Numerics/Optimizer/BFGSOpt.h +++ b/Code/Numerics/Optimizer/BFGSOpt.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // namespace BFGSOpt { diff --git a/Code/Numerics/Optimizer/LinearSearch.cpp b/Code/Numerics/Optimizer/LinearSearch.cpp index eaa72fbc6..8340d7e04 100644 --- a/Code/Numerics/Optimizer/LinearSearch.cpp +++ b/Code/Numerics/Optimizer/LinearSearch.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Numerics/Optimizer/testOptimizer.cpp b/Code/Numerics/Optimizer/testOptimizer.cpp index f27af0a71..628d6bc2b 100644 --- a/Code/Numerics/Optimizer/testOptimizer.cpp +++ b/Code/Numerics/Optimizer/testOptimizer.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/Numerics/SquareMatrix.h b/Code/Numerics/SquareMatrix.h index 4a44fda80..a9e0de4ce 100644 --- a/Code/Numerics/SquareMatrix.h +++ b/Code/Numerics/SquareMatrix.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_SQUARE_MATRIX_H__ #define __RD_SQUARE_MATRIX_H__ diff --git a/Code/Numerics/SymmMatrix.h b/Code/Numerics/SymmMatrix.h index b53fc7d55..114fefdc8 100644 --- a/Code/Numerics/SymmMatrix.h +++ b/Code/Numerics/SymmMatrix.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_SYMM_MATRIX_H__ #define __RD_SYMM_MATRIX_H__ diff --git a/Code/Numerics/Vector.h b/Code/Numerics/Vector.h index b5f8d0182..edbe927a6 100644 --- a/Code/Numerics/Vector.h +++ b/Code/Numerics/Vector.h @@ -1,7 +1,11 @@ // // Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_VECTOR_H__ #define __RD_VECTOR_H__ diff --git a/Code/Numerics/testMatrices.cpp b/Code/Numerics/testMatrices.cpp index 3e82d47a8..82834b8b2 100644 --- a/Code/Numerics/testMatrices.cpp +++ b/Code/Numerics/testMatrices.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2004-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Matrix.h" #include "SquareMatrix.h" diff --git a/Code/PgSQL/RDLib/BitOps.cpp b/Code/PgSQL/RDLib/BitOps.cpp index ad3bd57b2..e561b27f6 100644 --- a/Code/PgSQL/RDLib/BitOps.cpp +++ b/Code/PgSQL/RDLib/BitOps.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDLib.h" #include diff --git a/Code/PgSQL/RDLib/DistMat.cpp b/Code/PgSQL/RDLib/DistMat.cpp index 26d6606bd..514d14bd7 100644 --- a/Code/PgSQL/RDLib/DistMat.cpp +++ b/Code/PgSQL/RDLib/DistMat.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // char numByteOnBits[]={ 0,1,1,2,1,2,2,3,1,2,2,3,2,3,3,4,1,2,2,3,2,3,3,4,2,3,3,4,3,4,4,5, diff --git a/Code/PgSQL/RDLib/MolOps.cpp b/Code/PgSQL/RDLib/MolOps.cpp index 0683a2b4d..ab4fd56de 100644 --- a/Code/PgSQL/RDLib/MolOps.cpp +++ b/Code/PgSQL/RDLib/MolOps.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDLib.h" #include diff --git a/Code/PgSQL/RDLib/RDLib.cpp b/Code/PgSQL/RDLib/RDLib.cpp index db4f2f73d..34ce1943f 100644 --- a/Code/PgSQL/RDLib/RDLib.cpp +++ b/Code/PgSQL/RDLib/RDLib.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2005-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDLib.h" #include diff --git a/Code/PgSQL/RDLib/RDLib.h b/Code/PgSQL/RDLib/RDLib.h index f130679ec..30b6515ba 100644 --- a/Code/PgSQL/RDLib/RDLib.h +++ b/Code/PgSQL/RDLib/RDLib.h @@ -1,7 +1,11 @@ // // Copyright (C) 2005 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // extern "C" { diff --git a/Code/Query/AndQuery.h b/Code/Query/AndQuery.h index 5feb291c4..dbfa17415 100644 --- a/Code/Query/AndQuery.h +++ b/Code/Query/AndQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_ANDQUERY_H__ #define __RD_ANDQUERY_H__ diff --git a/Code/Query/EqualityQuery.h b/Code/Query/EqualityQuery.h index fac340f13..a8cdd4ba4 100644 --- a/Code/Query/EqualityQuery.h +++ b/Code/Query/EqualityQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_EQUALITYQUERY_H__ #define __RD_EQUALITYQUERY_H__ diff --git a/Code/Query/GreaterEqualQuery.h b/Code/Query/GreaterEqualQuery.h index a80c38d6c..89d195c90 100644 --- a/Code/Query/GreaterEqualQuery.h +++ b/Code/Query/GreaterEqualQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_GREATEREQUALQUERY_H__ #define __RD_GREATEREQUALQUERY_H__ diff --git a/Code/Query/GreaterQuery.h b/Code/Query/GreaterQuery.h index b5dc37ffe..501de118c 100644 --- a/Code/Query/GreaterQuery.h +++ b/Code/Query/GreaterQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_GREATERQUERY_H__ #define __RD_GREATERQUERY_H__ diff --git a/Code/Query/LessEqualQuery.h b/Code/Query/LessEqualQuery.h index 53c0b64f6..b00cf432f 100644 --- a/Code/Query/LessEqualQuery.h +++ b/Code/Query/LessEqualQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_LESSEQUALQUERY_H__ #define __RD_LESSEQUALQUERY_H__ diff --git a/Code/Query/LessQuery.h b/Code/Query/LessQuery.h index 08229959f..039f56374 100644 --- a/Code/Query/LessQuery.h +++ b/Code/Query/LessQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_LESSQUERY_H__ #define __RD_LESSQUERY_H__ diff --git a/Code/Query/OrQuery.h b/Code/Query/OrQuery.h index be1baf020..50e0559a9 100644 --- a/Code/Query/OrQuery.h +++ b/Code/Query/OrQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_ORQUERY_H__ #define __RD_ORQUERY_H__ diff --git a/Code/Query/Query.h b/Code/Query/Query.h index e9a7e840b..7d753a2fa 100644 --- a/Code/Query/Query.h +++ b/Code/Query/Query.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_QUERY_H__ #define __RD_QUERY_H__ diff --git a/Code/Query/QueryObjects.h b/Code/Query/QueryObjects.h index 993c274f3..237cfb2c5 100644 --- a/Code/Query/QueryObjects.h +++ b/Code/Query/QueryObjects.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file QueryObjects.h diff --git a/Code/Query/RangeQuery.h b/Code/Query/RangeQuery.h index 4968bcf7e..1485ae2f9 100644 --- a/Code/Query/RangeQuery.h +++ b/Code/Query/RangeQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_RANGEQUERY_H__ #define __RD_RANGEQUERY_H__ diff --git a/Code/Query/SetQuery.h b/Code/Query/SetQuery.h index 5a8178d9d..ac74f6b9f 100644 --- a/Code/Query/SetQuery.h +++ b/Code/Query/SetQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2008 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_SETQUERY_H__ #define __RD_SETQUERY_H__ diff --git a/Code/Query/XOrQuery.h b/Code/Query/XOrQuery.h index e5e947683..eee7eaa6c 100644 --- a/Code/Query/XOrQuery.h +++ b/Code/Query/XOrQuery.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_XORQUERY_H__ #define __RD_XORQUERY_H__ diff --git a/Code/Query/test.cpp b/Code/Query/test.cpp index 8c4246ab2..ee40db536 100755 --- a/Code/Query/test.cpp +++ b/Code/Query/test.cpp @@ -2,7 +2,11 @@ // // Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "QueryObjects.h" diff --git a/Code/RDBoost/Exceptions.h b/Code/RDBoost/Exceptions.h index 1ed6f67bc..fdda5eb7b 100644 --- a/Code/RDBoost/Exceptions.h +++ b/Code/RDBoost/Exceptions.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2005 greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_EXCEPTIONS_H #define _RD_EXCEPTIONS_H diff --git a/Code/RDBoost/PySequenceHolder.h b/Code/RDBoost/PySequenceHolder.h index 5343a2396..44393c474 100644 --- a/Code/RDBoost/PySequenceHolder.h +++ b/Code/RDBoost/PySequenceHolder.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2006 greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_PYSEQUENCEHOLDER_H_ diff --git a/Code/RDBoost/Wrap.cpp b/Code/RDBoost/Wrap.cpp index 7061f48a2..1f34170e6 100644 --- a/Code/RDBoost/Wrap.cpp +++ b/Code/RDBoost/Wrap.cpp @@ -2,7 +2,11 @@ // // Copyright (c) 2003-2006 greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // diff --git a/Code/RDBoost/Wrap.h b/Code/RDBoost/Wrap.h index 9a10884e7..c35f5d4f9 100644 --- a/Code/RDBoost/Wrap.h +++ b/Code/RDBoost/Wrap.h @@ -1,7 +1,11 @@ // // Copyright (c) 2003-2008 greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_WRAP_H_ #define _RD_WRAP_H_ diff --git a/Code/RDBoost/Wrap/RDBase.cpp b/Code/RDBoost/Wrap/RDBase.cpp index 6dfda36d3..a6f582855 100644 --- a/Code/RDBoost/Wrap/RDBase.cpp +++ b/Code/RDBoost/Wrap/RDBase.cpp @@ -2,7 +2,11 @@ // // Copyright (c) 2004-2010 greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include #include diff --git a/Code/RDGeneral/BadFileException.h b/Code/RDGeneral/BadFileException.h index 4cd07274e..26071498c 100644 --- a/Code/RDGeneral/BadFileException.h +++ b/Code/RDGeneral/BadFileException.h @@ -2,6 +2,10 @@ // Copyright 2003-2006 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_BADFILEEXCEPTION_H #define _RD_BADFILEEXCEPTION_H diff --git a/Code/RDGeneral/Dict.cpp b/Code/RDGeneral/Dict.cpp index 579055942..4b50d2df4 100755 --- a/Code/RDGeneral/Dict.cpp +++ b/Code/RDGeneral/Dict.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Dict.h" diff --git a/Code/RDGeneral/Dict.h b/Code/RDGeneral/Dict.h index a33c66009..d3d1d2ffa 100644 --- a/Code/RDGeneral/Dict.h +++ b/Code/RDGeneral/Dict.h @@ -2,6 +2,10 @@ // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // /*! \file Dict.h diff --git a/Code/RDGeneral/FileParseException.h b/Code/RDGeneral/FileParseException.h index 961106623..760023ea3 100644 --- a/Code/RDGeneral/FileParseException.h +++ b/Code/RDGeneral/FileParseException.h @@ -2,6 +2,10 @@ // Copyright 2003-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_FILEPARSEEXCEPTION_H #define _RD_FILEPARSEEXCEPTION_H diff --git a/Code/RDGeneral/Invariant.cpp b/Code/RDGeneral/Invariant.cpp index 7f380cc82..32507f420 100755 --- a/Code/RDGeneral/Invariant.cpp +++ b/Code/RDGeneral/Invariant.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2001-2008 Greg Landrum, Randal M. Henne, and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "Invariant.h" diff --git a/Code/RDGeneral/Invariant.h b/Code/RDGeneral/Invariant.h index d676495ca..a4c197095 100644 --- a/Code/RDGeneral/Invariant.h +++ b/Code/RDGeneral/Invariant.h @@ -2,6 +2,10 @@ // Copyright (C) 2001-2008 Greg Landrum, Randal M. Henne and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_INVARIANT_H__ diff --git a/Code/RDGeneral/RDLog.cpp b/Code/RDGeneral/RDLog.cpp index e0786872a..8de2483e5 100644 --- a/Code/RDGeneral/RDLog.cpp +++ b/Code/RDGeneral/RDLog.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2005-2010 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "RDLog.h" diff --git a/Code/RDGeneral/RDLog.h b/Code/RDGeneral/RDLog.h index 61c6674c6..6b5ebb65f 100644 --- a/Code/RDGeneral/RDLog.h +++ b/Code/RDGeneral/RDLog.h @@ -2,6 +2,10 @@ // Copyright (C) 2005-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RDLOG_H_29JUNE2005_ diff --git a/Code/RDGeneral/StreamOps.h b/Code/RDGeneral/StreamOps.h index 34e3558a5..1c1995e94 100644 --- a/Code/RDGeneral/StreamOps.h +++ b/Code/RDGeneral/StreamOps.h @@ -2,6 +2,10 @@ // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // #ifndef _RD_STREAMOPS_H diff --git a/Code/RDGeneral/testDict.cpp b/Code/RDGeneral/testDict.cpp index aa6767677..a7804b395 100755 --- a/Code/RDGeneral/testDict.cpp +++ b/Code/RDGeneral/testDict.cpp @@ -3,6 +3,10 @@ // Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // diff --git a/Code/RDGeneral/types.cpp b/Code/RDGeneral/types.cpp index 70615707b..b42285940 100755 --- a/Code/RDGeneral/types.cpp +++ b/Code/RDGeneral/types.cpp @@ -4,6 +4,10 @@ // Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // diff --git a/Code/RDGeneral/types.h b/Code/RDGeneral/types.h index 45d53f230..f72c48c9a 100644 --- a/Code/RDGeneral/types.h +++ b/Code/RDGeneral/types.h @@ -2,6 +2,10 @@ // Copyright (C) 2001-2006 Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_TYPES_H__ diff --git a/Code/RDGeneral/utils.cpp b/Code/RDGeneral/utils.cpp index 37d5ec2de..bb4554e3a 100755 --- a/Code/RDGeneral/utils.cpp +++ b/Code/RDGeneral/utils.cpp @@ -3,6 +3,10 @@ // Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "utils.h" #include diff --git a/Code/RDGeneral/utils.h b/Code/RDGeneral/utils.h index e6ea7ca5d..84de74c57 100644 --- a/Code/RDGeneral/utils.h +++ b/Code/RDGeneral/utils.h @@ -2,6 +2,10 @@ // Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC // // @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // // #ifndef __RD_UTILS_H__ diff --git a/Code/RDGeneral/versions.h b/Code/RDGeneral/versions.h index a7d3221a6..10de7e088 100644 --- a/Code/RDGeneral/versions.h +++ b/Code/RDGeneral/versions.h @@ -10,5 +10,5 @@ namespace RDKit { // The Boost version as detected at build time. // CMake's Boost_LIB_VERSION is defined by the FindBoost.cmake module // to be the same as the value from - const char *boostVersion="1_43"; + const char *boostVersion="1_44"; } diff --git a/Code/SimDivPickers/DistPicker.cpp b/Code/SimDivPickers/DistPicker.cpp index 28bf2f171..9aa68f41a 100644 --- a/Code/SimDivPickers/DistPicker.cpp +++ b/Code/SimDivPickers/DistPicker.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "DistPicker.h" diff --git a/Code/SimDivPickers/DistPicker.h b/Code/SimDivPickers/DistPicker.h index 3180cab11..a14c490d0 100644 --- a/Code/SimDivPickers/DistPicker.h +++ b/Code/SimDivPickers/DistPicker.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _RD_DISTPICKER_H #define _RD_DISTPICKER_H diff --git a/Code/SimDivPickers/HierarchicalClusterPicker.cpp b/Code/SimDivPickers/HierarchicalClusterPicker.cpp index e14d5d6d7..9afcf4087 100644 --- a/Code/SimDivPickers/HierarchicalClusterPicker.cpp +++ b/Code/SimDivPickers/HierarchicalClusterPicker.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "HierarchicalClusterPicker.h" #include diff --git a/Code/SimDivPickers/HierarchicalClusterPicker.h b/Code/SimDivPickers/HierarchicalClusterPicker.h index ca6a8f763..d30542553 100644 --- a/Code/SimDivPickers/HierarchicalClusterPicker.h +++ b/Code/SimDivPickers/HierarchicalClusterPicker.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef _HIERARCHCLUSTERPICKER_H #define _HIERARCHCLUSTERPICKER_H diff --git a/Code/SimDivPickers/MaxMinPicker.cpp b/Code/SimDivPickers/MaxMinPicker.cpp index ddbcff3f8..9922920e2 100644 --- a/Code/SimDivPickers/MaxMinPicker.cpp +++ b/Code/SimDivPickers/MaxMinPicker.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2007 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #include "MaxMinPicker.h" diff --git a/Code/SimDivPickers/MaxMinPicker.h b/Code/SimDivPickers/MaxMinPicker.h index 20ba31cfc..dde9a6ef1 100644 --- a/Code/SimDivPickers/MaxMinPicker.h +++ b/Code/SimDivPickers/MaxMinPicker.h @@ -1,7 +1,11 @@ // // Copyright (C) 2003-2007 Greg Landrum and Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #ifndef __RD_MAXMINPICKER_H__ #define __RD_MAXMINPICKER_H__ diff --git a/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp b/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp index d36a32296..ce8e8ef09 100644 --- a/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp +++ b/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/SimDivPickers/Wrap/MaxMinPicker.cpp b/Code/SimDivPickers/Wrap/MaxMinPicker.cpp index fd9145226..eaa970647 100644 --- a/Code/SimDivPickers/Wrap/MaxMinPicker.cpp +++ b/Code/SimDivPickers/Wrap/MaxMinPicker.cpp @@ -1,7 +1,11 @@ // $Id$ // // Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define NO_IMPORT_ARRAY diff --git a/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp b/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp index e935e6d03..15672ab9d 100644 --- a/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp +++ b/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp @@ -2,7 +2,11 @@ // // Copyright (C) 2003-2006 Rational Discovery LLC // -// @@ All Rights Reserved @@ +// @@ All Rights Reserved @@ +// This file is part of the RDKit. +// The contents are covered by the terms of the BSD license +// which is included in the file license.txt, found at the root +// of the RDKit source tree. // #define PY_ARRAY_UNIQUE_SYMBOL rdpicker_array_API #include diff --git a/rdkit/Chem/AllChem.py b/rdkit/Chem/AllChem.py index 7266c55b5..6c43bdb44 100644 --- a/rdkit/Chem/AllChem.py +++ b/rdkit/Chem/AllChem.py @@ -4,7 +4,11 @@ # # Copyright (C) 2006-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Import all RDKit chemistry modules diff --git a/rdkit/Chem/AtomPairs/Pairs.py b/rdkit/Chem/AtomPairs/Pairs.py index 4383608d2..3dba62783 100755 --- a/rdkit/Chem/AtomPairs/Pairs.py +++ b/rdkit/Chem/AtomPairs/Pairs.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2007 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Contains an implementation of Atom-pair fingerprints, as described in: diff --git a/rdkit/Chem/AtomPairs/Torsions.py b/rdkit/Chem/AtomPairs/Torsions.py index d4649dd4c..ba6624e00 100755 --- a/rdkit/Chem/AtomPairs/Torsions.py +++ b/rdkit/Chem/AtomPairs/Torsions.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Contains an implementation of Topological-torsion fingerprints, as described in: diff --git a/rdkit/Chem/AtomPairs/UnitTestDescriptors.py b/rdkit/Chem/AtomPairs/UnitTestDescriptors.py index 0e4ad0bb2..f6740dacf 100755 --- a/rdkit/Chem/AtomPairs/UnitTestDescriptors.py +++ b/rdkit/Chem/AtomPairs/UnitTestDescriptors.py @@ -2,7 +2,11 @@ # # Copyright (C) 2007 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import unittest,cPickle,os,gzip from rdkit import Chem diff --git a/rdkit/Chem/AtomPairs/Utils.py b/rdkit/Chem/AtomPairs/Utils.py index 6034bebf4..1d917a733 100755 --- a/rdkit/Chem/AtomPairs/Utils.py +++ b/rdkit/Chem/AtomPairs/Utils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem from rdkit.Chem import rdMolDescriptors diff --git a/rdkit/Chem/AvailDescriptors.py b/rdkit/Chem/AvailDescriptors.py index 39569fd6d..464c9a93e 100755 --- a/rdkit/Chem/AvailDescriptors.py +++ b/rdkit/Chem/AvailDescriptors.py @@ -4,7 +4,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ constructs the list of available descriptors diff --git a/rdkit/Chem/BuildFragmentCatalog.py b/rdkit/Chem/BuildFragmentCatalog.py index ba63ef472..5a16f7591 100755 --- a/rdkit/Chem/BuildFragmentCatalog.py +++ b/rdkit/Chem/BuildFragmentCatalog.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ command line utility for working with FragmentCatalogs (CASE-type analysis) diff --git a/rdkit/Chem/ChemUtils/BulkTester.py b/rdkit/Chem/ChemUtils/BulkTester.py index 9e70b2200..6595062a7 100644 --- a/rdkit/Chem/ChemUtils/BulkTester.py +++ b/rdkit/Chem/ChemUtils/BulkTester.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem import sys diff --git a/rdkit/Chem/ChemUtils/SDFToCSV.py b/rdkit/Chem/ChemUtils/SDFToCSV.py index 7f6d1b21e..f0fe2ef09 100644 --- a/rdkit/Chem/ChemUtils/SDFToCSV.py +++ b/rdkit/Chem/ChemUtils/SDFToCSV.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig from rdkit import Chem diff --git a/rdkit/Chem/ChemicalFeatures.py b/rdkit/Chem/ChemicalFeatures.py index 827899c53..6659fe8ca 100644 --- a/rdkit/Chem/ChemicalFeatures.py +++ b/rdkit/Chem/ChemicalFeatures.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdMolChemicalFeatures import * from rdChemicalFeatures import * diff --git a/rdkit/Chem/ChemicalForceFields.py b/rdkit/Chem/ChemicalForceFields.py index f50f86117..757668632 100644 --- a/rdkit/Chem/ChemicalForceFields.py +++ b/rdkit/Chem/ChemicalForceFields.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit.ForceField import * from rdkit.Chem.rdForceFieldHelpers import * diff --git a/rdkit/Chem/Crippen.py b/rdkit/Chem/Crippen.py index d622376fc..cf868e5cc 100755 --- a/rdkit/Chem/Crippen.py +++ b/rdkit/Chem/Crippen.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Atom-based calculation of LogP and MR using Crippen's approach diff --git a/rdkit/Chem/DSViewer.py b/rdkit/Chem/DSViewer.py index e31b1261c..64b91e8ae 100644 --- a/rdkit/Chem/DSViewer.py +++ b/rdkit/Chem/DSViewer.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ uses DSViewer to interact with molecules diff --git a/rdkit/Chem/Descriptors.py b/rdkit/Chem/Descriptors.py index e1915bc85..c6dce31bb 100755 --- a/rdkit/Chem/Descriptors.py +++ b/rdkit/Chem/Descriptors.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2010 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem from rdkit.Chem import rdMolDescriptors diff --git a/rdkit/Chem/Draw/DrawUtils.py b/rdkit/Chem/Draw/DrawUtils.py index e54e4d075..acca1a897 100644 --- a/rdkit/Chem/Draw/DrawUtils.py +++ b/rdkit/Chem/Draw/DrawUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import os from MolDrawing import MolDrawing diff --git a/rdkit/Chem/Draw/MolDrawing.py b/rdkit/Chem/Draw/MolDrawing.py index e0cc92b02..1034b23f0 100644 --- a/rdkit/Chem/Draw/MolDrawing.py +++ b/rdkit/Chem/Draw/MolDrawing.py @@ -2,7 +2,11 @@ # # Copyright (C) 2008 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem from rdkit import RDConfig diff --git a/rdkit/Chem/Draw/aggCanvas.py b/rdkit/Chem/Draw/aggCanvas.py index 0e9a1c84b..38b79036b 100644 --- a/rdkit/Chem/Draw/aggCanvas.py +++ b/rdkit/Chem/Draw/aggCanvas.py @@ -2,7 +2,11 @@ # # Copyright (C) 2008 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from aggdraw import Brush, Pen from aggdraw import Font diff --git a/rdkit/Chem/Draw/cairoCanvas.py b/rdkit/Chem/Draw/cairoCanvas.py index fb22b10a7..58bafba45 100644 --- a/rdkit/Chem/Draw/cairoCanvas.py +++ b/rdkit/Chem/Draw/cairoCanvas.py @@ -3,7 +3,11 @@ # Copyright (C) 2008 Greg Landrum # Copyright (C) 2009 Uwe Hoffmann # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import cairo import math diff --git a/rdkit/Chem/Draw/mplCanvas.py b/rdkit/Chem/Draw/mplCanvas.py index bc91d3501..971a01b20 100644 --- a/rdkit/Chem/Draw/mplCanvas.py +++ b/rdkit/Chem/Draw/mplCanvas.py @@ -2,7 +2,11 @@ # # Copyright (C) 2008 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from matplotlib.lines import Line2D from matplotlib.patches import Polygon diff --git a/rdkit/Chem/Draw/spingCanvas.py b/rdkit/Chem/Draw/spingCanvas.py index d872f0763..3d9e047d5 100644 --- a/rdkit/Chem/Draw/spingCanvas.py +++ b/rdkit/Chem/Draw/spingCanvas.py @@ -2,7 +2,11 @@ # # Copyright (C) 2008 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit.sping import pid import math diff --git a/rdkit/Chem/EState/AtomTypes.py b/rdkit/Chem/EState/AtomTypes.py index 72517ef98..98caafa7c 100755 --- a/rdkit/Chem/EState/AtomTypes.py +++ b/rdkit/Chem/EState/AtomTypes.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ contains SMARTS definitions and calculators for EState atom types diff --git a/rdkit/Chem/EState/EState.py b/rdkit/Chem/EState/EState.py index ad6c10d41..075bc0c43 100755 --- a/rdkit/Chem/EState/EState.py +++ b/rdkit/Chem/EState/EState.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Basic EState definitions diff --git a/rdkit/Chem/EState/EState_VSA.py b/rdkit/Chem/EState/EState_VSA.py index 9c65801cc..1ba40fa09 100755 --- a/rdkit/Chem/EState/EState_VSA.py +++ b/rdkit/Chem/EState/EState_VSA.py @@ -2,7 +2,11 @@ # # Copyright (C)2003-2010 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Hybrid EState-VSA descriptors (like the MOE VSA descriptors) diff --git a/rdkit/Chem/EState/Fingerprinter.py b/rdkit/Chem/EState/Fingerprinter.py index 5a31d7ed7..30a96874c 100755 --- a/rdkit/Chem/EState/Fingerprinter.py +++ b/rdkit/Chem/EState/Fingerprinter.py @@ -4,7 +4,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ EState fingerprinting diff --git a/rdkit/Chem/EState/UnitTestEState.py b/rdkit/Chem/EState/UnitTestEState.py index 0b39bcab6..1170d885e 100755 --- a/rdkit/Chem/EState/UnitTestEState.py +++ b/rdkit/Chem/EState/UnitTestEState.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the EState indices diff --git a/rdkit/Chem/EState/UnitTestFingerprints.py b/rdkit/Chem/EState/UnitTestFingerprints.py index ef0b86444..751d02104 100755 --- a/rdkit/Chem/EState/UnitTestFingerprints.py +++ b/rdkit/Chem/EState/UnitTestFingerprints.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the EState fingerprinting diff --git a/rdkit/Chem/EState/UnitTestTypes.py b/rdkit/Chem/EState/UnitTestTypes.py index 2a1d07ff5..6bc6fef14 100755 --- a/rdkit/Chem/EState/UnitTestTypes.py +++ b/rdkit/Chem/EState/UnitTestTypes.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the EState atom typing diff --git a/rdkit/Chem/EState/UnitTestVSA.py b/rdkit/Chem/EState/UnitTestVSA.py index 390441d94..95b8ffa3c 100644 --- a/rdkit/Chem/EState/UnitTestVSA.py +++ b/rdkit/Chem/EState/UnitTestVSA.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for MOE-type descriptors with EStates diff --git a/rdkit/Chem/FastSDMolSupplier.py b/rdkit/Chem/FastSDMolSupplier.py index 30882fc62..4a9910289 100644 --- a/rdkit/Chem/FastSDMolSupplier.py +++ b/rdkit/Chem/FastSDMolSupplier.py @@ -2,6 +2,10 @@ # # Copyright (C) 2007 Greg Landrum # @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import sys from rdkit import Chem diff --git a/rdkit/Chem/FeatFinderCLI.py b/rdkit/Chem/FeatFinderCLI.py index 7a655abc6..cc45ac81b 100644 --- a/rdkit/Chem/FeatFinderCLI.py +++ b/rdkit/Chem/FeatFinderCLI.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # _version = "$Rev$" _splashMessage=""" diff --git a/rdkit/Chem/FeatMaps/FeatMapParser.py b/rdkit/Chem/FeatMaps/FeatMapParser.py index 77134c9a7..40a7bc755 100644 --- a/rdkit/Chem/FeatMaps/FeatMapParser.py +++ b/rdkit/Chem/FeatMaps/FeatMapParser.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Geometry from rdkit.Chem import ChemicalFeatures diff --git a/rdkit/Chem/FeatMaps/FeatMapPoint.py b/rdkit/Chem/FeatMaps/FeatMapPoint.py index 148a14f4c..7f2395a21 100644 --- a/rdkit/Chem/FeatMaps/FeatMapPoint.py +++ b/rdkit/Chem/FeatMaps/FeatMapPoint.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Geometry from rdkit import Chem diff --git a/rdkit/Chem/FeatMaps/FeatMapUtils.py b/rdkit/Chem/FeatMaps/FeatMapUtils.py index 705083153..54a38d602 100644 --- a/rdkit/Chem/FeatMaps/FeatMapUtils.py +++ b/rdkit/Chem/FeatMaps/FeatMapUtils.py @@ -4,7 +4,11 @@ # # Copyright (C) 2006 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit.Chem.FeatMaps import FeatMaps import copy diff --git a/rdkit/Chem/FeatMaps/FeatMaps.py b/rdkit/Chem/FeatMaps/FeatMaps.py index 67900d48c..2cb9348ea 100644 --- a/rdkit/Chem/FeatMaps/FeatMaps.py +++ b/rdkit/Chem/FeatMaps/FeatMaps.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Geometry from rdkit import Chem diff --git a/rdkit/Chem/FeatMaps/UnitTestFeatMap.py b/rdkit/Chem/FeatMaps/UnitTestFeatMap.py index dbfcd86f2..cf47cd6eb 100644 --- a/rdkit/Chem/FeatMaps/UnitTestFeatMap.py +++ b/rdkit/Chem/FeatMaps/UnitTestFeatMap.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest,sys,os,math diff --git a/rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py b/rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py index 5dc4db76f..c62ea5b40 100644 --- a/rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py +++ b/rdkit/Chem/FeatMaps/UnitTestFeatMapParser.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest,sys,os,math diff --git a/rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py b/rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py index 49200ca7c..82b74c6fa 100644 --- a/rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py +++ b/rdkit/Chem/FeatMaps/UnitTestFeatMapUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest,sys,os,math diff --git a/rdkit/Chem/Features/FeatDirUtilsRD.py b/rdkit/Chem/Features/FeatDirUtilsRD.py index 0e595e805..23390d838 100644 --- a/rdkit/Chem/Features/FeatDirUtilsRD.py +++ b/rdkit/Chem/Features/FeatDirUtilsRD.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Geometry from rdkit import Chem diff --git a/rdkit/Chem/Fingerprints/ClusterMols.py b/rdkit/Chem/Fingerprints/ClusterMols.py index 4a1121e4e..99433f569 100755 --- a/rdkit/Chem/Fingerprints/ClusterMols.py +++ b/rdkit/Chem/Fingerprints/ClusterMols.py @@ -2,7 +2,11 @@ # # Copyright (c) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ utility functionality for clustering molecules using fingerprints includes a command line app for clustering diff --git a/rdkit/Chem/Fingerprints/DbFpSupplier.py b/rdkit/Chem/Fingerprints/DbFpSupplier.py index a6d496114..3f4126e0e 100755 --- a/rdkit/Chem/Fingerprints/DbFpSupplier.py +++ b/rdkit/Chem/Fingerprints/DbFpSupplier.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Supplies a class for working with fingerprints from databases #DOC diff --git a/rdkit/Chem/Fingerprints/FingerprintMols.py b/rdkit/Chem/Fingerprints/FingerprintMols.py index a83400058..5d5347d0c 100755 --- a/rdkit/Chem/Fingerprints/FingerprintMols.py +++ b/rdkit/Chem/Fingerprints/FingerprintMols.py @@ -2,7 +2,11 @@ # # Copyright (c) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ utility functionality for fingerprinting sets of molecules includes a command line app for working with fingerprints diff --git a/rdkit/Chem/Fingerprints/MolSimilarity.py b/rdkit/Chem/Fingerprints/MolSimilarity.py index 4c912f1de..32a3e9bed 100755 --- a/rdkit/Chem/Fingerprints/MolSimilarity.py +++ b/rdkit/Chem/Fingerprints/MolSimilarity.py @@ -2,7 +2,11 @@ # # Copyright (c) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ utility functionality for molecular similarity includes a command line app for screening databases diff --git a/rdkit/Chem/Fingerprints/SimilarityScreener.py b/rdkit/Chem/Fingerprints/SimilarityScreener.py index e880c5b50..e679fed12 100755 --- a/rdkit/Chem/Fingerprints/SimilarityScreener.py +++ b/rdkit/Chem/Fingerprints/SimilarityScreener.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ class definitions for similarity screening diff --git a/rdkit/Chem/Fingerprints/UnitTestFingerprints.py b/rdkit/Chem/Fingerprints/UnitTestFingerprints.py index 1d998cb31..788405a7e 100755 --- a/rdkit/Chem/Fingerprints/UnitTestFingerprints.py +++ b/rdkit/Chem/Fingerprints/UnitTestFingerprints.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for fingerprinting diff --git a/rdkit/Chem/FragmentCatalog.py b/rdkit/Chem/FragmentCatalog.py index 003d1e393..17b11a094 100755 --- a/rdkit/Chem/FragmentCatalog.py +++ b/rdkit/Chem/FragmentCatalog.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem from rdfragcatalog import * diff --git a/rdkit/Chem/FragmentMatcher.py b/rdkit/Chem/FragmentMatcher.py index 0cf738068..8277fa14a 100755 --- a/rdkit/Chem/FragmentMatcher.py +++ b/rdkit/Chem/FragmentMatcher.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ exposes a class for matching fragments of molecules. diff --git a/rdkit/Chem/Fragments.py b/rdkit/Chem/Fragments.py index 8480d2db3..5db52c1dd 100755 --- a/rdkit/Chem/Fragments.py +++ b/rdkit/Chem/Fragments.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2010 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ functions to match a bunch of fragment descriptors from a file diff --git a/rdkit/Chem/GraphDescriptors.py b/rdkit/Chem/GraphDescriptors.py index a3a208e5e..6bd719190 100755 --- a/rdkit/Chem/GraphDescriptors.py +++ b/rdkit/Chem/GraphDescriptors.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Calculation of topological/topochemical descriptors. diff --git a/rdkit/Chem/Graphs.py b/rdkit/Chem/Graphs.py index bbcabddb3..c76e0d7ba 100755 --- a/rdkit/Chem/Graphs.py +++ b/rdkit/Chem/Graphs.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg landrum and rational discovery llc # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Python functions for manipulating molecular graphs diff --git a/rdkit/Chem/Lipinski.py b/rdkit/Chem/Lipinski.py index 42a819978..dcf60a1c0 100755 --- a/rdkit/Chem/Lipinski.py +++ b/rdkit/Chem/Lipinski.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Calculation of Lipinski parameters for molecules diff --git a/rdkit/Chem/MACCSkeys.py b/rdkit/Chem/MACCSkeys.py index c8c78aa2e..1be089fab 100755 --- a/rdkit/Chem/MACCSkeys.py +++ b/rdkit/Chem/MACCSkeys.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ SMARTS definitions for the publically available MACCS keys and a MACCS fingerprinter diff --git a/rdkit/Chem/MolDb/Loader.py b/rdkit/Chem/MolDb/Loader.py index 859ad71d6..e4918176d 100644 --- a/rdkit/Chem/MolDb/Loader.py +++ b/rdkit/Chem/MolDb/Loader.py @@ -2,6 +2,10 @@ # # Copyright (C) 2007-2009 Greg Landrum # @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # try: import sqlalchemy diff --git a/rdkit/Chem/MolDb/Loader_orig.py b/rdkit/Chem/MolDb/Loader_orig.py index 90bad1632..49a3467d0 100644 --- a/rdkit/Chem/MolDb/Loader_orig.py +++ b/rdkit/Chem/MolDb/Loader_orig.py @@ -2,6 +2,10 @@ # # Copyright (C) 2007-2008 Greg Landrum # @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem from rdkit.Chem import AllChem diff --git a/rdkit/Chem/MolDb/Loader_sa.py b/rdkit/Chem/MolDb/Loader_sa.py index 9093666b6..84282da0a 100644 --- a/rdkit/Chem/MolDb/Loader_sa.py +++ b/rdkit/Chem/MolDb/Loader_sa.py @@ -2,6 +2,10 @@ # # Copyright (C) 2007-2009 Greg Landrum # @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import sqlalchemy diff --git a/rdkit/Chem/MolSurf.py b/rdkit/Chem/MolSurf.py index 1f8ad2196..6a4bb78a3 100755 --- a/rdkit/Chem/MolSurf.py +++ b/rdkit/Chem/MolSurf.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Exposes functionality for MOE-like approximate molecular surface area descriptors. diff --git a/rdkit/Chem/PeriodicTable.py b/rdkit/Chem/PeriodicTable.py index ab7b88638..6cc0f3975 100755 --- a/rdkit/Chem/PeriodicTable.py +++ b/rdkit/Chem/PeriodicTable.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ periodic table data, **obsolete** diff --git a/rdkit/Chem/Pharm2D/Generate.py b/rdkit/Chem/Pharm2D/Generate.py index c039e36ae..38a0b1e0f 100755 --- a/rdkit/Chem/Pharm2D/Generate.py +++ b/rdkit/Chem/Pharm2D/Generate.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ generation of 2D pharmacophores diff --git a/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py b/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py index 0e297f8fa..03554ebad 100755 --- a/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py +++ b/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Definitions for 2D Pharmacophores from: Gobbi and Poppinger, Biotech. Bioeng. _61_ 47-54 (1998) diff --git a/rdkit/Chem/Pharm2D/LazyGenerator.py b/rdkit/Chem/Pharm2D/LazyGenerator.py index 3d354ad64..f91bc04f5 100755 --- a/rdkit/Chem/Pharm2D/LazyGenerator.py +++ b/rdkit/Chem/Pharm2D/LazyGenerator.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # raise NotImplementedError,'not finished yet' """ lazy generator of 2D pharmacophore signature data diff --git a/rdkit/Chem/Pharm2D/Matcher.py b/rdkit/Chem/Pharm2D/Matcher.py index f293d20d4..0a7fdb803 100755 --- a/rdkit/Chem/Pharm2D/Matcher.py +++ b/rdkit/Chem/Pharm2D/Matcher.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ functionality for finding pharmacophore matches in molecules diff --git a/rdkit/Chem/Pharm2D/SigFactory.py b/rdkit/Chem/Pharm2D/SigFactory.py index f80b6a2d6..8a6b1129b 100755 --- a/rdkit/Chem/Pharm2D/SigFactory.py +++ b/rdkit/Chem/Pharm2D/SigFactory.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ contains factory class for producing signatures diff --git a/rdkit/Chem/Pharm2D/UnitTestGobbi.py b/rdkit/Chem/Pharm2D/UnitTestGobbi.py index 0cadd6762..097c88a4a 100755 --- a/rdkit/Chem/Pharm2D/UnitTestGobbi.py +++ b/rdkit/Chem/Pharm2D/UnitTestGobbi.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the signatures diff --git a/rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py b/rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py index e1ae1a491..40e60323f 100755 --- a/rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py +++ b/rdkit/Chem/Pharm2D/UnitTestLazyGenerator.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the lazy signature generator diff --git a/rdkit/Chem/Pharm2D/UnitTestMatcher.py b/rdkit/Chem/Pharm2D/UnitTestMatcher.py index 816c7a76d..d13f92485 100755 --- a/rdkit/Chem/Pharm2D/UnitTestMatcher.py +++ b/rdkit/Chem/Pharm2D/UnitTestMatcher.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the signatures diff --git a/rdkit/Chem/Pharm2D/UnitTestSignature.py b/rdkit/Chem/Pharm2D/UnitTestSignature.py index 4d0a996f0..dfc02f7a0 100755 --- a/rdkit/Chem/Pharm2D/UnitTestSignature.py +++ b/rdkit/Chem/Pharm2D/UnitTestSignature.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the signatures diff --git a/rdkit/Chem/Pharm2D/UnitTestUtils.py b/rdkit/Chem/Pharm2D/UnitTestUtils.py index 83bb3b0e4..5fa3bd3eb 100755 --- a/rdkit/Chem/Pharm2D/UnitTestUtils.py +++ b/rdkit/Chem/Pharm2D/UnitTestUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the signature utils diff --git a/rdkit/Chem/Pharm2D/Utils.py b/rdkit/Chem/Pharm2D/Utils.py index f4277bc5e..fed156a1e 100755 --- a/rdkit/Chem/Pharm2D/Utils.py +++ b/rdkit/Chem/Pharm2D/Utils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ utility functionality for the 2D pharmacophores code diff --git a/rdkit/Chem/Pharm3D/EmbedLib.py b/rdkit/Chem/Pharm3D/EmbedLib.py index e403ea436..bd64c4044 100644 --- a/rdkit/Chem/Pharm3D/EmbedLib.py +++ b/rdkit/Chem/Pharm3D/EmbedLib.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig diff --git a/rdkit/Chem/Pharm3D/ExcludedVolume.py b/rdkit/Chem/Pharm3D/ExcludedVolume.py index 1234a2831..73be3087e 100644 --- a/rdkit/Chem/Pharm3D/ExcludedVolume.py +++ b/rdkit/Chem/Pharm3D/ExcludedVolume.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # class ExcludedVolume(object): def __init__(self, featInfo,index=-1,exclusionDist=3.0): diff --git a/rdkit/Chem/Pharm3D/Pharmacophore.py b/rdkit/Chem/Pharm3D/Pharmacophore.py index fd978c97b..df2a37698 100644 --- a/rdkit/Chem/Pharm3D/Pharmacophore.py +++ b/rdkit/Chem/Pharm3D/Pharmacophore.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Geometry import numpy diff --git a/rdkit/Chem/Pharm3D/UnitTestEmbed.py b/rdkit/Chem/Pharm3D/UnitTestEmbed.py index 4d2df5bb6..8fa2d1a08 100644 --- a/rdkit/Chem/Pharm3D/UnitTestEmbed.py +++ b/rdkit/Chem/Pharm3D/UnitTestEmbed.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest,sys,os,cPickle diff --git a/rdkit/Chem/Pharm3D/UnitTestPharmacophore.py b/rdkit/Chem/Pharm3D/UnitTestPharmacophore.py index a53dfe1da..3591ad47f 100644 --- a/rdkit/Chem/Pharm3D/UnitTestPharmacophore.py +++ b/rdkit/Chem/Pharm3D/UnitTestPharmacophore.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest,sys,os,cPickle diff --git a/rdkit/Chem/PyMol.py b/rdkit/Chem/PyMol.py index f983dedf8..ce0e300b2 100644 --- a/rdkit/Chem/PyMol.py +++ b/rdkit/Chem/PyMol.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ uses pymol to interact with molecules diff --git a/rdkit/Chem/Randomize.py b/rdkit/Chem/Randomize.py index ca018718d..a5fc3312a 100644 --- a/rdkit/Chem/Randomize.py +++ b/rdkit/Chem/Randomize.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import random from rdkit import Chem diff --git a/rdkit/Chem/SATIS.py b/rdkit/Chem/SATIS.py index bd7188453..d48e601f4 100755 --- a/rdkit/Chem/SATIS.py +++ b/rdkit/Chem/SATIS.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Functionality for SATIS typing atoms diff --git a/rdkit/Chem/ShowMols.py b/rdkit/Chem/ShowMols.py index 35728e5f4..f89ce1c28 100644 --- a/rdkit/Chem/ShowMols.py +++ b/rdkit/Chem/ShowMols.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig diff --git a/rdkit/Chem/Subshape/UnitTestSubshape.py b/rdkit/Chem/Subshape/UnitTestSubshape.py index 298660dd4..6812c2ab1 100755 --- a/rdkit/Chem/Subshape/UnitTestSubshape.py +++ b/rdkit/Chem/Subshape/UnitTestSubshape.py @@ -1,7 +1,11 @@ # $Id$ # # Copyright (C) 2007 Greg Landrum -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest diff --git a/rdkit/Chem/Suppliers/DbMolSupplier.py b/rdkit/Chem/Suppliers/DbMolSupplier.py index 5b1b3e168..048e34c75 100755 --- a/rdkit/Chem/Suppliers/DbMolSupplier.py +++ b/rdkit/Chem/Suppliers/DbMolSupplier.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Supplies a class for working with molecules from databases #DOC diff --git a/rdkit/Chem/Suppliers/MolSupplier.py b/rdkit/Chem/Suppliers/MolSupplier.py index 7330b2142..51b77a528 100755 --- a/rdkit/Chem/Suppliers/MolSupplier.py +++ b/rdkit/Chem/Suppliers/MolSupplier.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Supplies an abstract class for working with sequences of molecules diff --git a/rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py b/rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py index 3169821e6..47c835364 100755 --- a/rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py +++ b/rdkit/Chem/Suppliers/UnitTestSDMolSupplier.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the SD file handling stuff diff --git a/rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py b/rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py index 2718c064e..77a7ac5c9 100755 --- a/rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py +++ b/rdkit/Chem/Suppliers/UnitTestSmilesMolSupplier.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the Smiles file handling stuff diff --git a/rdkit/Chem/TemplateAlign.py b/rdkit/Chem/TemplateAlign.py index 02f54c02c..adaea30c0 100644 --- a/rdkit/Chem/TemplateAlign.py +++ b/rdkit/Chem/TemplateAlign.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import Chem from rdkit.Chem import rdDepictor diff --git a/rdkit/Chem/UnitTestArom.py b/rdkit/Chem/UnitTestArom.py index 9cda28bb3..69bfb2843 100755 --- a/rdkit/Chem/UnitTestArom.py +++ b/rdkit/Chem/UnitTestArom.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the Crippen clogp and MR calculators diff --git a/rdkit/Chem/UnitTestCatalog.py b/rdkit/Chem/UnitTestCatalog.py index ac300d471..8748a74c8 100755 --- a/rdkit/Chem/UnitTestCatalog.py +++ b/rdkit/Chem/UnitTestCatalog.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import unittest diff --git a/rdkit/Chem/UnitTestChem.py b/rdkit/Chem/UnitTestChem.py index f7893a9ba..ccb3882fc 100755 --- a/rdkit/Chem/UnitTestChem.py +++ b/rdkit/Chem/UnitTestChem.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """basic unit testing code for the molecule boost wrapper diff --git a/rdkit/Chem/UnitTestChemAtom.py b/rdkit/Chem/UnitTestChemAtom.py index 411535880..470c998d1 100755 --- a/rdkit/Chem/UnitTestChemAtom.py +++ b/rdkit/Chem/UnitTestChemAtom.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rationa Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """basic unit testing code for atoms diff --git a/rdkit/Chem/UnitTestChemBond.py b/rdkit/Chem/UnitTestChemBond.py index af6966b18..7463eb87c 100755 --- a/rdkit/Chem/UnitTestChemBond.py +++ b/rdkit/Chem/UnitTestChemBond.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """basic unit testing code for the Bond wrapper diff --git a/rdkit/Chem/UnitTestChemSmarts.py b/rdkit/Chem/UnitTestChemSmarts.py index 132138fda..fd3cb14f5 100755 --- a/rdkit/Chem/UnitTestChemSmarts.py +++ b/rdkit/Chem/UnitTestChemSmarts.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """basic unit testing code for the wrapper of the SMARTS matcher diff --git a/rdkit/Chem/UnitTestChemv2.py b/rdkit/Chem/UnitTestChemv2.py index a8158e66c..671ef12cb 100755 --- a/rdkit/Chem/UnitTestChemv2.py +++ b/rdkit/Chem/UnitTestChemv2.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """basic unit testing code for the rdkit Boost wrapper diff --git a/rdkit/Chem/UnitTestCrippen.py b/rdkit/Chem/UnitTestCrippen.py index 29f619eec..56b6ab7fc 100755 --- a/rdkit/Chem/UnitTestCrippen.py +++ b/rdkit/Chem/UnitTestCrippen.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the Crippen clogp and MR calculators diff --git a/rdkit/Chem/UnitTestDescriptors.py b/rdkit/Chem/UnitTestDescriptors.py index 42aac9241..821508ae3 100755 --- a/rdkit/Chem/UnitTestDescriptors.py +++ b/rdkit/Chem/UnitTestDescriptors.py @@ -2,7 +2,11 @@ # # Copyright (C) 2007-2010 Greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ General descriptor testing code diff --git a/rdkit/Chem/UnitTestFragmentDescriptors.py b/rdkit/Chem/UnitTestFragmentDescriptors.py index 1592f6ef1..a42627b3b 100755 --- a/rdkit/Chem/UnitTestFragmentDescriptors.py +++ b/rdkit/Chem/UnitTestFragmentDescriptors.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Unit Test code for Fragment Descriptors diff --git a/rdkit/Chem/UnitTestGraphDescriptors.2.py b/rdkit/Chem/UnitTestGraphDescriptors.2.py index 8b82ac3b3..c5be84261 100755 --- a/rdkit/Chem/UnitTestGraphDescriptors.2.py +++ b/rdkit/Chem/UnitTestGraphDescriptors.2.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for graph-theoretical descriptors diff --git a/rdkit/Chem/UnitTestLipinski.py b/rdkit/Chem/UnitTestLipinski.py index 8fd6e42b2..657765213 100755 --- a/rdkit/Chem/UnitTestLipinski.py +++ b/rdkit/Chem/UnitTestLipinski.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for Lipinski parameter calculation diff --git a/rdkit/Chem/UnitTestOldBugs.py b/rdkit/Chem/UnitTestOldBugs.py index 3d70e7abd..f39403167 100755 --- a/rdkit/Chem/UnitTestOldBugs.py +++ b/rdkit/Chem/UnitTestOldBugs.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """testing code inspired by old bugs diff --git a/rdkit/Chem/UnitTestSATIS.py b/rdkit/Chem/UnitTestSATIS.py index 1f09b7a00..d10b90eb9 100755 --- a/rdkit/Chem/UnitTestSATIS.py +++ b/rdkit/Chem/UnitTestSATIS.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the SATIS numbers diff --git a/rdkit/Chem/UnitTestSmiles.py b/rdkit/Chem/UnitTestSmiles.py index c390363fe..721392f30 100755 --- a/rdkit/Chem/UnitTestSmiles.py +++ b/rdkit/Chem/UnitTestSmiles.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """basic unit testing code for SMILES canonicalization diff --git a/rdkit/Chem/UnitTestSuppliers.py b/rdkit/Chem/UnitTestSuppliers.py index b4386c128..1bfec4495 100755 --- a/rdkit/Chem/UnitTestSuppliers.py +++ b/rdkit/Chem/UnitTestSuppliers.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for molecule suppliers diff --git a/rdkit/Chem/UnitTestSurf.py b/rdkit/Chem/UnitTestSurf.py index 18f0eb623..8effd92ae 100755 --- a/rdkit/Chem/UnitTestSurf.py +++ b/rdkit/Chem/UnitTestSurf.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for surface calculations diff --git a/rdkit/Chem/__init__.py b/rdkit/Chem/__init__.py index 21591c3a8..23d1db858 100755 --- a/rdkit/Chem/__init__.py +++ b/rdkit/Chem/__init__.py @@ -4,7 +4,11 @@ # # Copyright (C) 2000-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ A module for molecules and stuff diff --git a/rdkit/DataManip/Metric/__init__.py b/rdkit/DataManip/Metric/__init__.py index 32c7558d7..7f2d376c4 100755 --- a/rdkit/DataManip/Metric/__init__.py +++ b/rdkit/DataManip/Metric/__init__.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import rdBase from rdMetricMatrixCalc import * diff --git a/rdkit/DataStructs/BitEnsemble.py b/rdkit/DataStructs/BitEnsemble.py index 5b00f7015..5312f5a5a 100755 --- a/rdkit/DataStructs/BitEnsemble.py +++ b/rdkit/DataStructs/BitEnsemble.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ #DOC diff --git a/rdkit/DataStructs/BitEnsembleDb.py b/rdkit/DataStructs/BitEnsembleDb.py index 4f2a8180a..1032eaab1 100755 --- a/rdkit/DataStructs/BitEnsembleDb.py +++ b/rdkit/DataStructs/BitEnsembleDb.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ This functionality gets mixed into the BitEnsemble class diff --git a/rdkit/DataStructs/BitUtils.py b/rdkit/DataStructs/BitUtils.py index ab842789f..4b00eddd9 100755 --- a/rdkit/DataStructs/BitUtils.py +++ b/rdkit/DataStructs/BitUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # def ConstructEnsembleBV(bv,bitsToKeep): """ diff --git a/rdkit/DataStructs/BitVect.py b/rdkit/DataStructs/BitVect.py index c4e6284e7..81a8725c7 100755 --- a/rdkit/DataStructs/BitVect.py +++ b/rdkit/DataStructs/BitVect.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ This has all be re-implemented in the C++ code """ diff --git a/rdkit/DataStructs/HierarchyVis.py b/rdkit/DataStructs/HierarchyVis.py index 6f0062e92..1b86e0aa7 100755 --- a/rdkit/DataStructs/HierarchyVis.py +++ b/rdkit/DataStructs/HierarchyVis.py @@ -2,7 +2,11 @@ # # Copyright (C)2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ functionality for drawing hierarchical catalogs on sping canvases diff --git a/rdkit/DataStructs/TopNContainer.py b/rdkit/DataStructs/TopNContainer.py index 04c75bc35..5ed1bba8b 100755 --- a/rdkit/DataStructs/TopNContainer.py +++ b/rdkit/DataStructs/TopNContainer.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import bisect class TopNContainer(object): diff --git a/rdkit/DataStructs/UnitTestBitEnsemble.py b/rdkit/DataStructs/UnitTestBitEnsemble.py index 0c9d97e23..7b6b3858d 100755 --- a/rdkit/DataStructs/UnitTestBitEnsemble.py +++ b/rdkit/DataStructs/UnitTestBitEnsemble.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for BitEnsembles """ diff --git a/rdkit/DataStructs/UnitTestBitVect.py b/rdkit/DataStructs/UnitTestBitVect.py index abcd779e9..bc3581f44 100755 --- a/rdkit/DataStructs/UnitTestBitVect.py +++ b/rdkit/DataStructs/UnitTestBitVect.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for the python BitVects """ diff --git a/rdkit/DataStructs/UnitTestTopNContainer.py b/rdkit/DataStructs/UnitTestTopNContainer.py index 2718a4bb7..67c808cb5 100755 --- a/rdkit/DataStructs/UnitTestTopNContainer.py +++ b/rdkit/DataStructs/UnitTestTopNContainer.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import unittest import random diff --git a/rdkit/DataStructs/UnitTestcBitVect.py b/rdkit/DataStructs/UnitTestcBitVect.py index 992536be4..19ba82e59 100755 --- a/rdkit/DataStructs/UnitTestcBitVect.py +++ b/rdkit/DataStructs/UnitTestcBitVect.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for the C++ BitVects """ diff --git a/rdkit/DataStructs/UnitTestcBitVect2.py b/rdkit/DataStructs/UnitTestcBitVect2.py index 0ed4cda65..6ac86ee05 100755 --- a/rdkit/DataStructs/UnitTestcBitVect2.py +++ b/rdkit/DataStructs/UnitTestcBitVect2.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for the C++ ExplicitBitVects """ diff --git a/rdkit/DataStructs/VectCollection.py b/rdkit/DataStructs/VectCollection.py index 23a8e9b2e..028737f8c 100644 --- a/rdkit/DataStructs/VectCollection.py +++ b/rdkit/DataStructs/VectCollection.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 greg landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import DataStructs import copy,struct,cPickle diff --git a/rdkit/DataStructs/__init__.py b/rdkit/DataStructs/__init__.py index be342acf5..b5e71ab99 100755 --- a/rdkit/DataStructs/__init__.py +++ b/rdkit/DataStructs/__init__.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import rdBase import cDataStructs diff --git a/rdkit/Dbase/DbConnection.py b/rdkit/Dbase/DbConnection.py index 9451d8bcf..a4327c279 100755 --- a/rdkit/Dbase/DbConnection.py +++ b/rdkit/Dbase/DbConnection.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ defines class _DbConnect_, for abstracting connections to databases diff --git a/rdkit/Dbase/DbInfo.py b/rdkit/Dbase/DbInfo.py index f2bdedf8f..9a7ce94b6 100755 --- a/rdkit/Dbase/DbInfo.py +++ b/rdkit/Dbase/DbInfo.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import DbModule diff --git a/rdkit/Dbase/DbModule.py b/rdkit/Dbase/DbModule.py index 0361f44b4..84a5b7aaa 100755 --- a/rdkit/Dbase/DbModule.py +++ b/rdkit/Dbase/DbModule.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig diff --git a/rdkit/Dbase/DbReport.py b/rdkit/Dbase/DbReport.py index 8bd8129af..3ffb0c99a 100755 --- a/rdkit/Dbase/DbReport.py +++ b/rdkit/Dbase/DbReport.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # try: from reportlab import platypus diff --git a/rdkit/Dbase/DbUtils.py b/rdkit/Dbase/DbUtils.py index fc4968c13..b8b8152fd 100755 --- a/rdkit/Dbase/DbUtils.py +++ b/rdkit/Dbase/DbUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ a set of functions for interacting with databases diff --git a/rdkit/Dbase/Pubmed/PubmedUtils.py b/rdkit/Dbase/Pubmed/PubmedUtils.py index 4d51cb3f8..f37dd4fe0 100755 --- a/rdkit/Dbase/Pubmed/PubmedUtils.py +++ b/rdkit/Dbase/Pubmed/PubmedUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import re,urllib import QueryParams diff --git a/rdkit/Dbase/Pubmed/QueryParams.py b/rdkit/Dbase/Pubmed/QueryParams.py index c50bd5a42..f3c12e86f 100755 --- a/rdkit/Dbase/Pubmed/QueryParams.py +++ b/rdkit/Dbase/Pubmed/QueryParams.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # import copy diff --git a/rdkit/Dbase/Pubmed/Records.py b/rdkit/Dbase/Pubmed/Records.py index 3de654668..c6c89dc22 100755 --- a/rdkit/Dbase/Pubmed/Records.py +++ b/rdkit/Dbase/Pubmed/Records.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from xml.etree import ElementTree # check the version of ElementTree. We need at least version 1.2 diff --git a/rdkit/Dbase/Pubmed/Searches.py b/rdkit/Dbase/Pubmed/Searches.py index 91eedc08a..93c152f68 100755 --- a/rdkit/Dbase/Pubmed/Searches.py +++ b/rdkit/Dbase/Pubmed/Searches.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Tools for doing PubMed searches and processing the results diff --git a/rdkit/Dbase/StorageUtils.py b/rdkit/Dbase/StorageUtils.py index 8be749534..c192f8f71 100755 --- a/rdkit/Dbase/StorageUtils.py +++ b/rdkit/Dbase/StorageUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Various storage (molecular and otherwise) functionality diff --git a/rdkit/Dbase/UnitTestDbConnect.py b/rdkit/Dbase/UnitTestDbConnect.py index c7e91253d..242813f0c 100755 --- a/rdkit/Dbase/UnitTestDbConnect.py +++ b/rdkit/Dbase/UnitTestDbConnect.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for database connection objects diff --git a/rdkit/Dbase/UnitTestDbResultSet.py b/rdkit/Dbase/UnitTestDbResultSet.py index 858dbcc15..735dc9cf7 100755 --- a/rdkit/Dbase/UnitTestDbResultSet.py +++ b/rdkit/Dbase/UnitTestDbResultSet.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the DbResultSet object diff --git a/rdkit/Dbase/UnitTestDbUtils.py b/rdkit/Dbase/UnitTestDbUtils.py index 02b42772f..e2ca29210 100755 --- a/rdkit/Dbase/UnitTestDbUtils.py +++ b/rdkit/Dbase/UnitTestDbUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the database utilities diff --git a/rdkit/Dbase/__init__.py b/rdkit/Dbase/__init__.py index f57284341..b5526d435 100755 --- a/rdkit/Dbase/__init__.py +++ b/rdkit/Dbase/__init__.py @@ -1,7 +1,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ a module for interacting with databases """ diff --git a/rdkit/Excel/ExcelWrapper.py b/rdkit/Excel/ExcelWrapper.py index 877b1d52f..353314721 100755 --- a/rdkit/Excel/ExcelWrapper.py +++ b/rdkit/Excel/ExcelWrapper.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ a wrapper for interacting with Excel diff --git a/rdkit/Excel/Molecules.py b/rdkit/Excel/Molecules.py index eb3ea08e8..21ec47d9d 100755 --- a/rdkit/Excel/Molecules.py +++ b/rdkit/Excel/Molecules.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ mixin class for dealing with ChemDraw for Excel diff --git a/rdkit/Logger/Logger.py b/rdkit/Logger/Logger.py index 82acbe0c7..4ba526936 100755 --- a/rdkit/Logger/Logger.py +++ b/rdkit/Logger/Logger.py @@ -10,7 +10,11 @@ # # Copyright (c) 2001-2006 Greg Landrum and Rational Discovery LLC, # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # #---------------------------------------------------------------------- """ Provides a Logger class which can be wrapped around another diff --git a/rdkit/Logger/SpingDemo.py b/rdkit/Logger/SpingDemo.py index 44dfa457c..e3bbe0a95 100755 --- a/rdkit/Logger/SpingDemo.py +++ b/rdkit/Logger/SpingDemo.py @@ -2,7 +2,11 @@ # # Copyright (c) 2001-2006, Greg Landrum and Rational Discovery LLC, # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ demo code for the Logger class diff --git a/rdkit/Logger/UnitTestLogger.py b/rdkit/Logger/UnitTestLogger.py index bb76bcd76..61a9d1634 100755 --- a/rdkit/Logger/UnitTestLogger.py +++ b/rdkit/Logger/UnitTestLogger.py @@ -2,7 +2,11 @@ # # Copyright (c) 2001-2006, Greg Landrum and Rational Discovery LLC, # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ unit testing code for the logger diff --git a/rdkit/Logger/demo.py b/rdkit/Logger/demo.py index e7b775324..e249c1090 100755 --- a/rdkit/Logger/demo.py +++ b/rdkit/Logger/demo.py @@ -2,7 +2,11 @@ # # Copyright (c) 2001-2006, Greg Landrum and Rational Discovery LLC, # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # # Demo code for the Logger class diff --git a/rdkit/ML/AnalyzeComposite.py b/rdkit/ML/AnalyzeComposite.py index d8bde2aca..436d259b3 100755 --- a/rdkit/ML/AnalyzeComposite.py +++ b/rdkit/ML/AnalyzeComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ command line utility to report on the contributions of descriptors to tree-based composite models diff --git a/rdkit/ML/BuildComposite.py b/rdkit/ML/BuildComposite.py index 646bc5779..b6cb2fb00 100755 --- a/rdkit/ML/BuildComposite.py +++ b/rdkit/ML/BuildComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ command line utility for building composite models diff --git a/rdkit/ML/Cluster/ClusterUtils.py b/rdkit/ML/Cluster/ClusterUtils.py index 3c16ba7a9..677a21f6e 100755 --- a/rdkit/ML/Cluster/ClusterUtils.py +++ b/rdkit/ML/Cluster/ClusterUtils.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """utility functions for clustering diff --git a/rdkit/ML/Cluster/ClusterVis.py b/rdkit/ML/Cluster/ClusterVis.py index baa1639b0..408a66308 100755 --- a/rdkit/ML/Cluster/ClusterVis.py +++ b/rdkit/ML/Cluster/ClusterVis.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """Cluster tree visualization using Sping diff --git a/rdkit/ML/Cluster/Clusters.py b/rdkit/ML/Cluster/Clusters.py index 3e2869219..93d9c38c3 100755 --- a/rdkit/ML/Cluster/Clusters.py +++ b/rdkit/ML/Cluster/Clusters.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ contains the Cluster class for representing hierarchical cluster trees diff --git a/rdkit/ML/Cluster/Murtagh.py b/rdkit/ML/Cluster/Murtagh.py index 16153d8e6..93ee8b81a 100755 --- a/rdkit/ML/Cluster/Murtagh.py +++ b/rdkit/ML/Cluster/Murtagh.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Interface to the C++ Murtagh hierarchic clustering code diff --git a/rdkit/ML/Cluster/Resemblance.py b/rdkit/ML/Cluster/Resemblance.py index e3dccc184..11be14c20 100755 --- a/rdkit/ML/Cluster/Resemblance.py +++ b/rdkit/ML/Cluster/Resemblance.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ code for dealing with resemblance (metric) matrices diff --git a/rdkit/ML/Cluster/Standardize.py b/rdkit/ML/Cluster/Standardize.py index 887ea750f..f9ff3471a 100755 --- a/rdkit/ML/Cluster/Standardize.py +++ b/rdkit/ML/Cluster/Standardize.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ contains code for standardization of data matrices for clustering diff --git a/rdkit/ML/Cluster/UnitTestCluster.py b/rdkit/ML/Cluster/UnitTestCluster.py index add82c153..4d12cf489 100755 --- a/rdkit/ML/Cluster/UnitTestCluster.py +++ b/rdkit/ML/Cluster/UnitTestCluster.py @@ -2,7 +2,11 @@ # # Copyright (C) 2001-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for clustering diff --git a/rdkit/ML/CompositeRun.py b/rdkit/ML/CompositeRun.py index 24deb0f14..9af46b1ed 100755 --- a/rdkit/ML/CompositeRun.py +++ b/rdkit/ML/CompositeRun.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ contains a class to store parameters for and results from Composite building diff --git a/rdkit/ML/EnrichPlot.py b/rdkit/ML/EnrichPlot.py index 0fbe04bbc..4502517cf 100755 --- a/rdkit/ML/EnrichPlot.py +++ b/rdkit/ML/EnrichPlot.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """Command line tool to construct an enrichment plot from saved composite models diff --git a/rdkit/ML/GrowComposite.py b/rdkit/ML/GrowComposite.py index ec262f70f..f7508b67d 100755 --- a/rdkit/ML/GrowComposite.py +++ b/rdkit/ML/GrowComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ command line utility for growing composite models diff --git a/rdkit/ML/MatOps.py b/rdkit/ML/MatOps.py index b41026529..9ca06c9d3 100755 --- a/rdkit/ML/MatOps.py +++ b/rdkit/ML/MatOps.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2006 greg Landrum # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Matrix operations which may or may not come in handy some day diff --git a/rdkit/ML/ScreenComposite.py b/rdkit/ML/ScreenComposite.py index 546653bb1..aca5639fc 100755 --- a/rdkit/ML/ScreenComposite.py +++ b/rdkit/ML/ScreenComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ command line utility for screening composite models diff --git a/rdkit/ML/UnitTestAnalyzeComposite.py b/rdkit/ML/UnitTestAnalyzeComposite.py index 2cf036b81..8d8efc331 100644 --- a/rdkit/ML/UnitTestAnalyzeComposite.py +++ b/rdkit/ML/UnitTestAnalyzeComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2004-2006 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the AnalyzeComposite functionality diff --git a/rdkit/ML/UnitTestBuildComposite.py b/rdkit/ML/UnitTestBuildComposite.py index 6e8906b1d..3ce55df8c 100755 --- a/rdkit/ML/UnitTestBuildComposite.py +++ b/rdkit/ML/UnitTestBuildComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the BuildComposite functionality diff --git a/rdkit/ML/UnitTestScreenComposite.py b/rdkit/ML/UnitTestScreenComposite.py index aa176f71b..244ddc06e 100755 --- a/rdkit/ML/UnitTestScreenComposite.py +++ b/rdkit/ML/UnitTestScreenComposite.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2008 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """unit testing code for the ScreenComposite functionality diff --git a/rdkit/ML/__init__.py b/rdkit/ML/__init__.py index 00123f332..dd4c646ca 100755 --- a/rdkit/ML/__init__.py +++ b/rdkit/ML/__init__.py @@ -1,6 +1,10 @@ # # Copyright (C) 2000-2006 greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ module containing machine learning code """ diff --git a/rdkit/RDConfig.py b/rdkit/RDConfig.py index b506210f0..8493a7603 100755 --- a/rdkit/RDConfig.py +++ b/rdkit/RDConfig.py @@ -2,7 +2,11 @@ # # Copyright (C) 2000-2010 Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ Configuration for the RDKit Python code diff --git a/rdkit/RDLogger.py b/rdkit/RDLogger.py index 184b3b2d0..5b2c97520 100644 --- a/rdkit/RDLogger.py +++ b/rdkit/RDLogger.py @@ -2,7 +2,11 @@ # # Copyright (C) 2005-2006 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit.rdBase import EnableLog,DisableLog,AttachFileToLog,LogMessage diff --git a/rdkit/RDRandom.py b/rdkit/RDRandom.py index d8b03b414..2c8642dd8 100755 --- a/rdkit/RDRandom.py +++ b/rdkit/RDRandom.py @@ -2,7 +2,11 @@ # # Copyright (C) 2003-2006 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ making random numbers consistent so we get good regressions diff --git a/rdkit/TestRunner.py b/rdkit/TestRunner.py index ba34f5f31..5a4bf5d6a 100755 --- a/rdkit/TestRunner.py +++ b/rdkit/TestRunner.py @@ -2,7 +2,11 @@ # # Copyright (c) 2003-2010 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # from rdkit import RDConfig import os,sys,time diff --git a/rdkit/sping/Qt/pidQt4.py b/rdkit/sping/Qt/pidQt4.py index 66e832fd4..73ab89cb2 100644 --- a/rdkit/sping/Qt/pidQt4.py +++ b/rdkit/sping/Qt/pidQt4.py @@ -3,6 +3,10 @@ # Copyright (C) 2008 Greg Landrum # # @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """piddleQt diff --git a/rdkit/utils/chemdraw.py b/rdkit/utils/chemdraw.py index 88906b873..e8d28f43f 100755 --- a/rdkit/utils/chemdraw.py +++ b/rdkit/utils/chemdraw.py @@ -2,7 +2,11 @@ # # Copyright (C) 2002-2006 Greg Landrum and Rational Discovery LLC # -# @@ All Rights Reserved @@ +# @@ All Rights Reserved @@ +# This file is part of the RDKit. +# The contents are covered by the terms of the BSD license +# which is included in the file license.txt, found at the root +# of the RDKit source tree. # """ tools for interacting with chemdraw