* - added gen_rdkit_stubs Python module to generate rdkit-stubs
- added patch_rdkit_docstrings Python module to patch existing C++ sources to fix docstrings missing self parameter and add named parameters taken from C++ signatures where possible
- added rdkit-stubs/CMakeLists.txt to build rdkit-stubs as part of the RDKit build
- added an option to CMakeLists.txt to enable building rdkit-stubs as part of the RDKit build (defaults to OFF)
* fixed CMakeLists.txt, rdkit-stubs/CMakeLists.txt and a doctest
* - added missing cmp_func parameter
- fixed case with overloads with optional parameters
- do not trim params if expected_param_count == -1
- add dummy parameter names if we could not find any
- keep into account member functions when making up parameter names
- address __init__ and make_constructor __init__ functions
- fix incorrectly assigned staticmethods
* patched sources
* address residual few remarks
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Co-authored-by: ptosco <paolo.tosco@novartis.com>
* - Fix a couple of docstrings that were confusing boost::python
- Python keywords should not be used as parameter names
* changes in response to review
* removed two leftover BOOST_PYTHON_FUNCTION_OVERLOADS
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Co-authored-by: Tosco, Paolo <paolo.tosco@novartis.com>
Shift `Trajectory` and `Snapshot` class constructors to methods on the classes themselves to prevent shadowing of class names in the Python wrapper module
* run clang-tidy with readability-braces-around-statements
clang-format the results
clean up all the parts that clang-tidy-8 broke
* fix problem on windows
