12 Commits

Author SHA1 Message Date
Ric
880a8e5725 Reformat Python code for 2023.03 release (#6294)
* run yapf

* run isort

---------

Co-authored-by: Greg Landrum <greg.landrum@gmail.com>
2023-04-28 06:53:56 +02:00
Paolo Tosco
145828967f Fixes #3492 (#3527)
* fixes #3492

* added missing const
2020-11-03 06:35:07 +01:00
gedeck
4ecbad332c yapf formatting of recent changes to Python code in rdkit and Code 2016-10-24 11:57:08 -04:00
Jan Domański
56234066b8 Conformer GetPos returns a numpy array rather than a tuple of tuples (#1087)
* Conformer GetPos returns a numpy array rather than a tuple of tuples

* Add missing method binding to GetPositions for a conformer

* Minor fixes
- avoid copying the coordinates,
- add a test
2016-10-14 05:02:59 +02:00
gedeck
e9af48ffd7 Issue1071/yapf (#1078)
* Issue #1071: add yapf configuration file

* yapf formatting of Code directory

* yapf formatting of Contrib directory

* yapf formatting of Data directory

* yapf formatting of Docs directory

* yapf formatting of External directory

* yapf formatting of Projects directory

* yapf formatting of Regress directory

* yapf formatting of Scripts directory

* yapf formatting of Web directory

* yapf formatting of rdkit directory
2016-09-23 04:58:46 +02:00
Paolo Tosco
2b3a818f84 - removed the dependency on Trajectory from ROMol and ForceField 2016-05-11 19:37:09 +01:00
Paolo Tosco
a2eca41365 - the Trajectory object now holds a vector of Snapshots rather than
a vector of shared_ptr to Snapshots
- The PySnapshot class was removed
- the Trajectory::readAmber and Trajectory::readGromos member functions
  were converted into non-member functions
- tests were modified accordingly
2016-05-04 18:42:23 +01:00
Paolo Tosco
d16b312ee6 - Completely revised coordinate ownership
- Implemented Python wrappers
- prepared relevant test cases
2016-04-24 23:30:25 +01:00
Riccardo Vianello
3358ec5925 initial set of changes introducing python3 support 2014-06-17 18:26:41 +02:00
Greg Landrum
8bf7a4c187 now all tests pass here as well 2009-02-03 05:26:10 +00:00
Greg Landrum
5d03333c22 setup svn keywords (should have done this before import... grn) 2006-05-06 22:54:39 +00:00
Greg Landrum
75a79b6327 initial import 2006-05-06 22:20:08 +00:00