* run clang-tidy with readability-braces-around-statements
clang-format the results
clean up all the parts that clang-tidy-8 broke
* fix problem on windows
* - MatchFusedRings does not imply CompleteRingsOnly anymore
* - use a more specific query molecule rather than an ambiguous SMARTS string in MCSResult
* - changes in response to review
* add the ring decomposer lib (temporarily?)
* simplify makefile
* very basics work
* backup
* basics working
* builds and basic tests pass
* get this building again
* expose the ring families
* add tests on the python side
* make the pywrapper for this optional
* remove some extra bits
* cleanup
* switch to using RDL as an external project
* make sure this still works if we do not use the URF code
* remove BUILD_ALWAYS
* fix linkage of Java wrapper and cartridge (hopefully)
* fix cmake for wrappers (hopefully)
* forgot a semicolon
* try to force URF lib to build first
* improve memory management and interface
* fix dependency specifier
* make pointer initialization explicit
This may not be necessary, but it feels safer.
* not pleasing and needs to be cleaned up
but it builds
* not pleasing and needs to be cleaned up
but it builds
* cleanup in preparation for merging
* cleanup in preparation for merging
* switch to rareylab repo
* fix updated copyright date
* Fix updated copyright date
* switch to a specific library tag
Co-Authored-By: Florian Flachsenberg <flachsenberg@zbh.uni-hamburg.de>
* change in response to review
