Commit Graph

3 Commits

Author SHA1 Message Date
Paolo Tosco
c5dc6cc258 A few improvements to SubstructLibrary (#3557)
* - enable SubstructLibrary to build without threading support
- enforce consistency across single- and multi-threaded runs
- improve performance on single-threaded runs avoiding overhead of spawning threads
- consolidate internalCountMatches and internalGetMatches into one function to reduce code duplication
- fix a bug in Python CountMatches whjich would run on 1000 threads

* reverted Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp as it is now in its own PR (#3558)

* - added missing cast
- removed unnecessary std::make_move_iterator
- added Brian's test

Co-authored-by: Greg Landrum <greg.landrum@gmail.com>
2020-11-18 16:07:34 -05:00
Brian Kelley
8fb99abc88 Fix/add patterns reset holders (#3033)
* Reset the mol and fp holders after calling AddPatterns

* Add test for seg fault
2020-03-25 06:36:00 +01:00
Brian Kelley
4c0a99f2ad Add multithreaded pattern/fp generator (#2973)
* Add threaded pattern generator to help speed up library creation

* Add size to FPHolderBase

* Add more complete python wrapper, fix leak in doctest

* Add basic usage test for addPatterns, fix I/O leak

* Add basic test for trusted smiles

* Actually add the new code

* Export addPatterns on windows

* Try fixing the cartridge build

* Change pattern_factory to PatternFactory

* Change boost::ref to std::ref
2020-03-04 09:41:03 -05:00