* - added gen_rdkit_stubs Python module to generate rdkit-stubs
- added patch_rdkit_docstrings Python module to patch existing C++ sources to fix docstrings missing self parameter and add named parameters taken from C++ signatures where possible
- added rdkit-stubs/CMakeLists.txt to build rdkit-stubs as part of the RDKit build
- added an option to CMakeLists.txt to enable building rdkit-stubs as part of the RDKit build (defaults to OFF)
* fixed CMakeLists.txt, rdkit-stubs/CMakeLists.txt and a doctest
* - added missing cmp_func parameter
- fixed case with overloads with optional parameters
- do not trim params if expected_param_count == -1
- add dummy parameter names if we could not find any
- keep into account member functions when making up parameter names
- address __init__ and make_constructor __init__ functions
- fix incorrectly assigned staticmethods
* patched sources
* address residual few remarks
---------
Co-authored-by: ptosco <paolo.tosco@novartis.com>
* test getIdOfEntryWithBitId()
* remove unused functions
* improve bv tests in python wrapper
* more UniformGrid tests
* improve deprotect coverage
* improve abbreviations coverage
* add operator!= to DeprotectData
* more testing for adjustQueryProperties
* fix a copy-paste bug
* copy-paste bug
* more testing
* more testing
* more testing
* fix an edge case bug in getValenceContrib
* more bond tests
* add operator!= to StereoInfo
tests StereoInfo::operator==
* make some internal functions testable
* more testing
* minor code cleanup
* fix some bad caching behavior in getDistanceMat() and get3DDistanceMat()
testing
* test FixeMolSizeMolBundle() copy ctor
* deprecate BalabanJ
* more testing
* testing
* mods to get things working for windows DLL builds
(don't bother running some of the tests there)
* fix a typo
* add a wrapper for bulk nearest-neighbor calculations
A bit of minor refactoring
* header fix
* add tests for new neighbor functionality
* add the rest of the similarity metrics
remove const specifiers from return values in DataStructs
add initial pass at query-query matching for Atoms and Bonds
fix and test for sf.net issu 2738320
add Mol.AddRecursiveQuery() method to Mol
