# File: struchk.aci # # Purpose: Contains parameters used to estimate the next # position of a molecule to be available for # deprotonation. One application is fixing the # charges in structures preprocessed by STRUCHK.EXE # # The parameters are fitted to a set of reference # structures taken from the following sources: # March, Hollemann/Wiberg, Klumpp, CRC-Handbook # # augmented atoms considered acidic 41 "C" "C(-A)" "C(-A)(-A)" "C(=A)" "C(-A)(-A)(-A)" "C(=A)(-A)" "C(#A)" "N" "N(-A)" "N(=A)" "N(-A)(-A)" "N+1" "N+1(-A)" "N+1(-A)(-A)" "N+1(-A)(-A)(-A)" "N-1(-A)" "P" "P(-A)" "P(-A)(-A)" "P(=A)(-A)" "P+1" "P+1(-A)" "P+1(-A)(-A)" "O" "O(-A)" "O+1" "O+1(-A)" "O+1(-A)(-A)" "O+1(=A)" "S" "S+1" "S(-A)" "S+1(-A)" "Se" "Se(-A)" "Te" "Te(-A)" "F" "Cl" "Br" "I" # charge increments, hlocal(symbol), halpha(symbol), hbeta(symbol), mult_inc 2 O -8.1 -5.9 -2.6 -0.0 A -8.4 -5.9 -2.6 -1.6 # element acidity factors, flocal(symbol), falpha(symbol), fbeta(symbol) 13 B 18.7 0.7 -0.4 C 18.7 -0.2 -0.4 N 16.7 -3.3 -2.6 O 10.3 -1.3 -2.0 F 4.7 0.7 -1.4 P 13.8 -1.7 -0.9 S 8.8 -0.9 -1.8 Se 5.1 -0.9 -1.0 Te 4.4 0.3 -1.0 Cl -0.2 -2.9 -1.0 Br -0.3 0.0 -1.0 I -0.4 2.5 -1.0 A 8.0 0.5 -1.0 # alpha condictivities, galpha(path) 8 "B(-B,C,N,O,F)" 0.8 "C(-B,C,N,O,F)" 0.8 "N(-B,C,N,O,F)" 0.5 "O(-B,C,N,O,F)" 0.1 "A(-B,C,N,O,F)" 0.9 "A(-A)" 0.6 "A(=A)" 0.8 "A(#A)" 1.9 # beta conductivities, gbeta(path) 10 "A(-B,C,N,O)(-A)" 0.3 "O(-A)(-A)" 0.5 "A(-A)(-A)" 1.5 "A(-B,C,N,O)(=A)" 2.0 "O(-A)(=A)" 1.7 "A(-A)(=A)" 0.8 "A(-A)(#A)" 1.6 "A(=A)(-A)" 0.0 "A(=A)(=A)" 1.3 "A(#A)(-A)" 1.6 # transformation polynom coefficient. # transformation is pKa = 7+(x-7)*beta+((x-7)*alpha)^3 # alpha beta 0.2452 1.6358 # electronegativity used for relaxation process # The carbon entry must!! be the first one. 103 C 2.55 N 3.04 O 3.44 F 3.98 P 2.19 S 2.58 Cl 3.16 As 2.18 Se 2.55 Br 2.96 Sb 2.05 Te 2.10 I 2.66 Si 1.90 H 2.20 He 0.00 Li 0.98 Be 1.57 B 2.04 Ne 0.00 Na 0.93 Mg 1.31 Al 1.61 Ar 0.00 K 0.82 Ca 1.00 Sc 1.36 Ti 1.54 V 1.63 Cr 1.66 Mn 1.55 Fe 1.83 Co 1.88 Ni 1.91 Cu 1.90 Zn 1.65 Ga 1.81 Ge 2.01 Kr 0.00 Rb 0.82 Sr 0.95 Y 1.22 Zr 1.33 Nb 1.60 Mo 2.16 Tc 1.90 Ru 2.20 Rh 2.28 Pd 2.20 Ag 1.93 Cd 1.69 In 1.78 Sn 1.96 Xe 0.00 Cs 0.79 Ba 0.89 La 1.10 Ce 1.12 Pr 1.13 Nd 1.14 Pm 1.20 Sm 1.17 Eu 1.20 Gd 1.20 Tb 1.20 Dy 1.22 Ho 1.23 Er 1.24 Tm 1.25 Yb 1.10 Lu 1.27 Hf 1.30 Ta 1.50 W 2.36 Re 1.90 Os 2.20 Ir 2.20 Pt 2.28 Au 2.54 Hg 2.00 Tl 2.04 Pb 2.33 Bi 2.02 Po 2.00 At 2.20 Rn 0.00 Fr 0.70 Ra 0.90 Ac 1.10 Th 1.30 Pa 1.50 U 1.38 Np 1.36 Pu 1.28 Am 1.30 Cm 1.30 Bk 1.30 Cf 1.30 Es 1.30 Fm 1.30 Md 0.00 No 0.00 Lr 0.00