/* * $Id$ * * Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc. * All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are * met: * * * Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * * Redistributions in binary form must reproduce the above * copyright notice, this list of conditions and the following * disclaimer in the documentation and/or other materials provided * with the distribution. * * Neither the name of Novartis Institutes for BioMedical Research Inc. * nor the names of its contributors may be used to endorse or promote * products derived from this software without specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT * OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ %typemap(javaimports) RDKit::PeriodicTable " /** singleton class for retrieving information about atoms
Use the singleton like this:
const PeriodicTable *tbl = PeriodicTable::getTable(); tbl->getAtomicWeight(6); // get atomic weight for Carbon tbl->getAtomicWeight('C'); // get atomic weight for Carbon */" %javamethodmodifiers RDKit::PeriodicTable::getAtomicWeight ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getAtomicWeight ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getDefaultValence ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getDefaultValence ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getNouterElecs ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getNouterElecs ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getRb0 ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getRb0 ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getRcovalent ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getRcovalent ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getRvdw ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getRvdw ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getValenceList ( char * elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getValenceList ( const std::string & elementSymbol ) const " /**
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. */ public"; %javamethodmodifiers RDKit::PeriodicTable::getValenceList ( UINT atomicNumber ) const " /**
@return a vector of all stable valences. For atoms where we really don't have any idea what a reasonable maximum valence is (like transition metals), the vector ends with -1 1 */ public"; %javamethodmodifiers RDKit::PeriodicTable::moreElectroNegative ( UINT anum1, UINT anum2 ) const " /**
convenience function to determine which atom is more electronegative
check if atom with atomic number anum1 is more electronegative than the one with anum2 this is rather lame but here is how we do it
* the atom with the higher number of outer shell electrons is considered more electronegative * if the # of outer shell elecs are the same the atom with the lower atomic weight is more electronegative
*/ public";