// $Id$
//
//  Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc.
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#include <GraphMol/ChemReactions/Reaction.h>
#include <GraphMol/ChemReactions/ReactionParser.h>
#include <GraphMol/FileParsers/FileParsers.h>
#include <GraphMol/SmilesParse/SmartsWrite.h>
#include <sstream>

namespace RDKit {

  //! returns the reaction SMARTS for a reaction
  std::string ChemicalReactionToRxnSmarts(ChemicalReaction &rxn){
    std::string res="";
    for(MOL_SPTR_VECT::const_iterator iter=rxn.beginReactantTemplates();
	iter != rxn.endReactantTemplates();++iter){
      if(iter!=rxn.beginReactantTemplates()) res +=".";
      res += MolToSmarts(**iter,true);
    }
    res += ">>";
    for(MOL_SPTR_VECT::const_iterator iter=rxn.beginProductTemplates();
	iter != rxn.endProductTemplates();++iter){
      if(iter!=rxn.beginProductTemplates()) res +=".";
      res += MolToSmarts(**iter,true);
    }
    return res;
  };
#if 1
  //! returns an RXN block for a reaction
  std::string ChemicalReactionToRxnBlock(const ChemicalReaction &rxn){
    std::ostringstream res;
    res<<"$RXN\n\n      RDKit\n\n";
    res<<std::setw(3)<<rxn.getNumReactantTemplates()<<std::setw(3)<<rxn.getNumProductTemplates()<<"\n";

    
    for(MOL_SPTR_VECT::const_iterator iter=rxn.beginReactantTemplates();
	iter != rxn.endReactantTemplates();++iter){
      // to write the mol block, we need ring information:
      MolOps::findSSSR(**iter);
      res<<"$MOL\n";
      res << MolToMolBlock(**iter,true,-1,false);
    }

    for(MOL_SPTR_VECT::const_iterator iter=rxn.beginProductTemplates();
	iter != rxn.endProductTemplates();++iter){
      // to write the mol block, we need ring information:
      MolOps::findSSSR(**iter);
      res<<"$MOL\n";
      res << MolToMolBlock(**iter,true,-1,false);
    }
    return res.str();
  };
#endif
}