/* * $Id: GraphMolTest.java 131 2011-01-20 22:01:29Z ebakke $ * * Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc. * All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are * met: * * * Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * * Redistributions in binary form must reproduce the above * copyright notice, this list of conditions and the following * disclaimer in the documentation and/or other materials provided * with the distribution. * * Neither the name of Novartis Institutes for BioMedical Research Inc. * nor the names of its contributors may be used to endorse or promote * products derived from this software without specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT * OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package org.RDKit; import static org.junit.Assert.*; import java.io.File; import org.junit.*; /** * Super class for all JUnit tests for GraphMol wrappers. */ public class GraphMolTest { public static final double defaultDoubleTol = 1e-5; public static final double defaultPointTol = 1e-4; @BeforeClass public static void initialize() throws Exception { System.loadLibrary("GraphMolWrap"); } @AfterClass public static void cleanup() { Runtime.getRuntime().gc(); Runtime.getRuntime().runFinalization(); } public static File getRdBase () { String rdpath = System.getenv("RDBASE"); assertNotNull( rdpath ); File base = new File(rdpath); return base; } public static void assertPointEquals(Point3D pt1, Point3D pt2, double tol) { assertEquals(pt1.getX(),pt2.getX(),tol); assertEquals(pt1.getY(),pt2.getY(),tol); assertEquals(pt1.getZ(),pt2.getZ(),tol); } public static void assertPointEquals(Point3D pt1, Point3D pt2) { assertPointEquals(pt1, pt2, defaultPointTol); } }