Files
rdkit/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
Brian Kelley d8722b1c64 First entry of the SubstructLibrary module (#1493)
* First entry of the SubstructLibrary module

* Switch to shared_ptrs for memory safety

* run clang-format and add a test

* only build when threadsafe_sss is enabled, only test when test_multithreaded is enabled

* Adds PRECONDITION

* Adds exceptions for out of range errors

* Changes getQueryBits to makeQueryBits for clarity

* Adds API point to add Binary and Smiles directly

* Replaces 0 with NULL for clarity.

* Removes debugging code.

* Makes endIdx non-inclusive

* Adds substruct searching options

* Adds preconditions

* Small documentation cleanup and removes a line of code.

* Add DataStructs library dependency

* Actually uses passed in parameters

* Adds TrustedSmiles/Binary inputs

* Adds more api testing options/trusted smiles and binary inputs

* Finalizes API adds docs and doctests

* Minor copyright fixes and such
2017-07-19 10:39:42 +02:00

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// Copyright (c) 2017, Novartis Institutes for BioMedical Research Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
// disclaimer in the documentation and/or other materials provided
// with the distribution.
// * Neither the name of Novartis Institutes for BioMedical Research Inc.
// nor the names of its contributors may be used to endorse or promote
// products derived from this software without specific prior written
// permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
// "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
// LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
// A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
// OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
#include "rdSubstructLibrary.h"
#include <RDBoost/python.h>
namespace python = boost::python;
void wrap_substructlibrary();
BOOST_PYTHON_MODULE(rdSubstructLibrary) { wrap_substructlibrary(); }