rdkit

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Files

ptosco dbf04ca926 The only relevant changes to implement Marcus Martin corrections

to original Rappe' UFF equations are in Code/ForceField/UFF/AngleBend.cpp
and Code/ForceField/UFF/BondStretch.cpp; the changes in
Code/ForceField/UFF/TorsionAngle.cpp are purely cosmetic.

Tests modified according to the small differences in geometries
and energies following the implementation of those corrections:
- Code/ForceField/UFF/testUFFForceField.cpp,
- Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py,
- Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp,
- Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py,
- rdkit/Chem/Pharm3D/UnitTestEmbed.py

Coordinate files modified according to the small differences in
geometries following the implementation of those corrections:
- Code/GraphMol/DistGeomHelpers/test_data/initCoords.random.sdf

2013-09-24 11:29:33 +02:00

cis_trans_cases.csv

initial import

2006-05-06 22:20:08 +00:00

combi_coords.sdf

initial import

2006-05-06 22:20:08 +00:00

constrain1.sdf

first pass at constrained conformation generation

2008-07-15 05:31:45 +00:00

embedDistOpti.sdf

initial import