mirror of
https://github.com/rdkit/rdkit.git
synced 2026-06-04 21:54:27 +08:00
* added *S-S* and bounds overwriting tests * fixed *S-S* * added bounds overwriting test * searching for the bug * added test case * improved tests + fixed bug 9166 * updated ref mols * regenerated refs * clean up * changed ref data * removed print statements * Update Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp Co-authored-by: Greg Landrum <greg.landrum@gmail.com> * Typo Co-authored-by: Greg Landrum <greg.landrum@gmail.com> * Incooperated suggestions * applied remaining suggestions * restored imports --------- Co-authored-by: Katharina Buchthal <katharina.buchthal@phys.chem.ethz.ch> Co-authored-by: Greg Landrum <greg.landrum@gmail.com>
223 lines
7.2 KiB
Plaintext
223 lines
7.2 KiB
Plaintext
|
|
RDKit 3D
|
|
|
|
12 13 0 0 0 0 0 0 0 0999 V2000
|
|
0.8321 2.4870 0.3477 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.0369 1.0672 -0.0934 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.0453 0.1978 -0.0618 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.3352 0.7058 0.0108 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.5554 2.1610 -0.2349 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-2.3323 -0.1868 0.3696 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-2.1742 -1.4715 -0.1567 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.9102 -2.0162 0.0635 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.1927 -1.1687 0.0265 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.4976 -1.6484 0.0224 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
2.5042 -0.6924 0.1364 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
2.2890 0.5651 -0.4299 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
2 3 2 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
4 6 2 0
|
|
6 7 1 0
|
|
7 8 2 0
|
|
3 9 1 0
|
|
9 10 2 0
|
|
10 11 1 0
|
|
11 12 2 0
|
|
12 2 1 0
|
|
9 8 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
7 7 0 0 0 0 0 0 0 0999 V2000
|
|
0.2119 -1.1099 0.0515 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.0002 -1.1632 -0.6337 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.7482 -0.0146 -0.3587 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.0656 1.1398 -0.7319 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.2724 1.1215 -0.5867 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.9568 0.0504 0.0145 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
2.3728 -0.0240 -0.4836 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 2 0
|
|
2 3 1 0
|
|
3 4 2 0
|
|
4 5 1 0
|
|
5 6 2 0
|
|
6 7 1 0
|
|
6 1 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
5 4 0 0 0 0 0 0 0 0999 V2000
|
|
2.4100 0.1231 -0.0992 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.9662 0.3061 0.2998 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.0585 -0.4841 -0.2840 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.3528 -0.6199 0.2118 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-2.0818 0.6748 -0.1283 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
2 3 2 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
19 22 0 0 0 0 0 0 0 0999 V2000
|
|
-3.1329 -0.5193 -0.0866 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-2.9745 0.7256 -0.5688 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-4.1968 1.5170 -0.7573 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-5.1578 0.9272 0.6826 S 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-4.3565 -0.6917 0.7639 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.7252 1.2616 -0.5502 N 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.7102 0.5708 0.0292 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.5473 0.8769 0.5332 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.3515 -0.1668 0.0911 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.4753 -1.1868 -0.0094 N 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.7512 -0.7619 -0.2306 N 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.9875 -1.3348 -0.1560 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-2.1128 -2.4614 0.4330 O 0 0 0 0 0 0 0 0 0 0 0 0
|
|
2.7702 -0.1226 -0.3039 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
3.3003 1.1135 -0.6666 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
4.6234 1.4430 -0.3951 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
5.3555 0.5970 0.4261 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
4.9991 -0.7347 0.2673 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
3.6826 -1.0525 0.1251 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 2 0
|
|
2 3 1 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
2 6 1 0
|
|
6 7 1 0
|
|
7 8 2 0
|
|
8 9 1 0
|
|
9 10 2 0
|
|
10 11 1 0
|
|
11 12 1 0
|
|
12 13 2 0
|
|
9 14 1 0
|
|
14 15 2 0
|
|
15 16 1 0
|
|
16 17 2 0
|
|
17 18 1 0
|
|
18 19 2 0
|
|
12 1 1 0
|
|
5 1 1 0
|
|
11 7 1 0
|
|
19 14 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
8 8 0 0 0 0 0 0 0 0999 V2000
|
|
-0.0632 1.4732 -0.1234 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.3107 1.1527 -0.5623 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
2.0404 0.0641 0.1591 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.4442 -1.2974 -0.1973 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.0714 -1.3339 0.2602 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.9841 0.0061 0.0378 S 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-2.0990 -0.1740 -0.9400 O 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.7205 0.1092 1.3659 O 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
2 3 1 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
5 6 1 0
|
|
6 7 2 0
|
|
6 8 2 0
|
|
6 1 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
6 6 0 0 0 0 0 0 0 0999 V2000
|
|
1.0647 0.7486 -0.0507 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.0309 1.3253 -0.7056 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.1657 0.5563 -0.9408 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.0954 -0.7616 -0.4997 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.1840 -1.2634 -0.7070 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.0434 -0.6053 0.1572 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 2 0
|
|
2 3 1 0
|
|
3 4 2 0
|
|
4 5 1 0
|
|
5 6 2 0
|
|
6 1 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
5 5 0 0 0 0 0 0 0 0999 V2000
|
|
-0.7437 -0.9972 -0.1969 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.1988 0.3760 0.2122 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.0055 1.2300 -0.1461 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.2198 0.4000 0.0249 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.7282 -1.0088 0.1059 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
2 3 1 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
5 1 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
6 6 0 0 0 0 0 0 0 0999 V2000
|
|
-1.4605 -0.1026 -0.0892 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.6567 -1.1303 -0.6812 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.7631 -1.1538 -0.9036 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.5183 0.0832 -0.5088 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.4858 1.1640 -0.7601 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.6501 1.1395 0.1961 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
2 3 1 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
5 6 1 0
|
|
6 1 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
5 5 0 0 0 0 0 0 0 0999 V2000
|
|
1.1057 -0.0429 -0.7495 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.1047 -0.0069 0.7541 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.2113 -0.0067 -0.0092 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.0555 -1.2641 0.0199 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.9437 1.3207 -0.0153 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
2 3 1 0
|
|
3 4 1 0
|
|
3 5 1 0
|
|
3 1 1 0
|
|
M END
|
|
$$$$
|
|
|
|
RDKit 3D
|
|
|
|
6 7 0 0 0 0 0 0 0 0999 V2000
|
|
0.4933 -0.0903 0.3973 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1.4455 -0.8856 -0.4941 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
0.5119 1.3691 0.3754 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.4257 0.7956 -0.4528 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-1.2646 -0.3461 -0.5856 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
-0.7603 -0.8427 0.7597 C 0 0 0 0 0 0 0 0 0 0 0 0
|
|
1 2 1 0
|
|
1 3 1 0
|
|
3 4 1 0
|
|
4 5 1 0
|
|
5 6 1 0
|
|
4 1 1 0
|
|
6 1 1 0
|
|
M END
|
|
$$$$
|