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* First try at using DistViolationContribs only the most basic of testing has been done also add ForceField::distance2 to allow some optimizations * allow testing using old approach * optimization At this point testUFFForceFieldHelpers fails since the check for std::max_element in the e_contribs vector at Embedder.cpp:513 is now doing something totally different (instead of a bunch of small distance violation contribs, we have one big one). We'll need to come up with something for this. With the benchmarking set that I'm using - 500 DG conformers for ~465 COD molecules using 10 threads - this runs in almost 10% less time than master. * backup; builds, tests do not pass * all tests pass except the old failure * more constification * backup/debugging * add fourthdim contribs the same way * tests now pass * deprecations * remove unused vars and code * changes in response to review