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* refactor the code to determine whether or not an atom is in brackets * move the definition of isMetal to QueryOps * atoms bound to metals in SMILES should always be in square brackets Implementation and some test updates needs confirmation that all of tests run * basic tests pass * java tests pass * update js tests * doc updates * Update Code/GraphMol/catch_graphmol.cpp Co-authored-by: Ricardo Rodriguez <ricrogz@users.noreply.github.com> * Update Code/GraphMol/SmilesParse/test.cpp Co-authored-by: Ricardo Rodriguez <ricrogz@users.noreply.github.com> * finish fixing tests * bump yaehmop version to allow compilation to work --------- Co-authored-by: Ricardo Rodriguez <ricrogz@users.noreply.github.com>