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d5ffea669d
this only is going to work in cases where CIP codes have been (i.e. can be) assigned to atoms.
91 lines
2.6 KiB
C++
Executable File
91 lines
2.6 KiB
C++
Executable File
//
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// Copyright (C) 2001-2006 Greg Landrum and Rational Discovery LLC
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//
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// @@ All Rights Reserved @@
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//
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#ifndef _RD_SUBSTRUCTMATCH_H__
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#define _RD_SUBSTRUCTMATCH_H__
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// std bits
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#include <vector>
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// vflib bits
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#include <argraph.h>
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#include <vf_mono_state.h>
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#include <vf2_mono_state.h>
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namespace RDKit{
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class ROMol;
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class Atom;
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class Bond;
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//! \brief used to return matches from substructure searching,
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//! The format is (queryAtomIdx, molAtomIdx)
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typedef std::vector< std::pair<int,int> > MatchVectType;
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//typedef VFMonoState MatcherState;
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typedef VF2MonoState MatcherState;
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typedef ARGraph<const Atom, const Bond> AR_MOLGRAPH;
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//! Internal Use Only
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AR_MOLGRAPH *getMolGraph(const ROMol &mol);
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#ifdef CACHE_ARMOLGRAPHS
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namespace SubstructLocal {
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void clearMolGraphCache();
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}
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#endif
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//! Find a substructure match for a query in a molecule
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/*!
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\param mol The ROMol to be searched
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\param query The query ROMol
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\param matchVect Used to return the match
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(pre-existing contents will be deleted)
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\param recursionPossible flags whether or not recursive matches are allowed
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\param useChirality use atomic CIP codes as part of the comparison
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\return whether or not a match was found
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*/
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bool SubstructMatch(const ROMol &mol,const ROMol &query,
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MatchVectType &matchVect,
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bool recursionPossible=true,
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bool useChirality=false);
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//! \overload
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bool SubstructMatch(AR_MOLGRAPH *molG,const ROMol &query,
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MatchVectType &matchVect,
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bool recursionPossible=true,
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bool useChirality=false);
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//! Find all substructure matches for a query in a molecule
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/*!
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\param mol The ROMol to be searched
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\param query The query ROMol
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\param matchVect Used to return the matches
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(pre-existing contents will be deleted)
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\param uniquify Toggles uniquification (by atom index) of the results
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\param recursionPossible flags whether or not recursive matches are allowed
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\param useChirality use atomic CIP codes as part of the comparison
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\return the number of matches found
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*/
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unsigned int SubstructMatch(const ROMol &mol,const ROMol &query,
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std::vector< MatchVectType > &matchVect,
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bool uniquify=true,bool recursionPossible=true,
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bool useChirality=false);
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//! \overload
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unsigned int SubstructMatch(AR_MOLGRAPH *molG,const ROMol &query,
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std::vector< MatchVectType > &matchVect,
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bool uniquify=true,bool recursionPossible=true,
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bool useChirality=false);
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}
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#endif
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