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* a bit of minor refactoring * create API function to get experimental torsion bonds * put the torsion index in the dictionary in this case it's silly to return tuples to python * allow passing an EmbedParameters object from python * capture the torsion index too * add an atomIndices component we should typedef the torsionBonds type * test torsion index * changers in response to review * changes in response to review * fix merge mistake