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651edcd75178539ab9afd8a38fa926a2154169b5
rdkit/Code/DataStructs/testDatastructs.cpp
Greg Landrum 651edcd751 fix and tests issue 3295215
2011-04-30 03:15:46 +00:00

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// $Id$
//
// Copyright (C) 2001-2010 Greg Landrum and Rational Discovery LLC
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#include <cstdlib>
#include <iostream>
#include <sstream>
#include <fstream>
#include <ios>
#include "BitVects.h"
#include "BitOps.h"
#include "BitVectUtils.h"
#include "base64.h"
#include <cmath>
#include "DiscreteValueVect.h"
#include <RDGeneral/Invariant.h>
#include <RDGeneral/RDLog.h>
#include <RDBoost/Exceptions.h>
#include <DataStructs/SparseIntVect.h>
#include <stdlib.h>
using namespace std;
using namespace RDKit;
template< typename T >
inline void TXTMSG(const char *__a__,T __b__){ BOOST_LOG(rdInfoLog) << (__a__) << " " << (__b__) << std::endl; }
bool feq(double v1,double v2,double tol=1e-4){
return fabs(v1-v2)<1e-4;
}
template<typename T> void Test(T arg){
T t1(20);
TXTMSG("Set 10:",t1.setBit(10));
TXTMSG("Set 11:",t1.setBit(11));
TXTMSG("Set 14:",t1.setBit(14));
TXTMSG("Set 10:",t1.setBit(10));
TXTMSG("Get 14:",t1.getBit(14));
TXTMSG("Num:",t1.getNumBits());
TXTMSG("NumOn:",t1.getNumOnBits());
TXTMSG("NumOff:",t1.getNumOffBits());
TEST_ASSERT(t1==t1);
IntVect onBits;
t1.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
T t2(t1);
//onBits = t2.getOnBits();
TXTMSG("t2[19]:",t2[19]);
TXTMSG("t2[14]:",t2[14]);
TEST_ASSERT(t2==t1);
t2 = t1;
//onBits = t2.getOnBits();
TXTMSG("t2[19]:",t2[19]);
t2.unsetBit(14);
TXTMSG("t2[14]:",t2[14]);
t2.setBit(15);
t2.setBit(17);
TEST_ASSERT(t2!=t1);
std::cout << "t1: ";
t1.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
std::cout << "t2: ";
t2.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
std::cout << "t1|t2: ";
T t3=t1|t2;
t3.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
std::cout << "t1&t2: ";
t3=t1 & t2;
t3.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
std::cout << "t1^t2: ";
t3=t1 ^ t2;
t3.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
std::cout << "~t1: ";
t3= ~t1;
t3.getOnBits(onBits);
std::copy(onBits.begin(),onBits.end(),std::ostream_iterator<int>(std::cout,", "));
std::cout << std::endl;
try{
t3.getBit(4000);
} catch (IndexErrorException) {
std::cout << " except " << endl;
} catch (...) {
std::cout << " ERROR EXCEPT " << endl;
}
T t4(t1.toString());
TEST_ASSERT(t4==t1);
TEST_ASSERT(feq(TanimotoSimilarity(t1,t4),1.0));
T *t5 = FoldFingerprint(t1);
TEST_ASSERT(t5->getNumBits() == t1.getNumBits()/2);
TEST_ASSERT(t5->getBit(0));
TEST_ASSERT(t5->getBit(1));
TEST_ASSERT(t5->getBit(4));
TEST_ASSERT(!t5->getBit(2));
TEST_ASSERT(!t5->getBit(3));
delete t5;
std::string pkl=t1.toString();
const char *pkl64=Base64Encode(pkl.c_str(),pkl.size());
T t6(t1.getNumBits());
t6.initFromText(pkl64,strlen(pkl64),true);
delete [] pkl64;
TEST_ASSERT(t6==t1);
}
template<typename T> void TaniTest(T &arg){
std::string fps[4] = {
".b+HHa.EgU6+ibEIr89.CpX0g8FZiXH+R0+Ps.mr6tg.2",
".b7HEa..ccc+gWEIr89.8lV8gOF3aXFFR.+Ps.mZ6lg.2",
".H+nHq2EcY09y5EIr9e.8p50h0NgiWGNx4+Hm+Gbslw.2",
".1.HHa..cUI6i5E2rO8.Op10d0NoiWGVx.+Hm.Gb6lo.2",
};
double dists[] = {
1.0,0.788991,0.677165,0.686957,
1.0,0.578125,0.591304,
1.0,0.732759,
1.0
};
int idx=0;
for(int i=0;i<4;i++){
T v1(256);
FromDaylightString(v1,fps[i]);
for(int j=i;j<4;j++){
T v2(256);
FromDaylightString(v2,fps[j]);
double tani=TanimotoSimilarity(v1,v2);
TEST_ASSERT(feq(tani,dists[idx]));
tani = TverskySimilarity(v1,v2,1.,1.);
TEST_ASSERT(feq(tani,dists[idx]));
tani = SimilarityWrapper(v1,v2,TanimotoSimilarity<T,T>);
TEST_ASSERT(feq(tani,dists[idx]));
tani = SimilarityWrapper(v1,v2,1.,1.,TverskySimilarity<T,T>);
TEST_ASSERT(feq(tani,dists[idx]));
tani = SimilarityWrapper(v1,v2,TanimotoSimilarity<T,T>,true);
TEST_ASSERT(feq(tani,1.-dists[idx]));
tani = SimilarityWrapper(v1,v2,1.,1.,TverskySimilarity<T,T>,true);
TEST_ASSERT(feq(tani,1.-dists[idx]));
idx++;
}
}
}
template<typename T> void ProbeTest(T &arg){
int sz=1000;
T t1(sz),t2(sz);
for(int i=0;i<sz;i+=2){
t1.setBit(i);
if(i<3*sz/4) t2.setBit(i);
}
std::string pkl=t1.toString();
TEST_ASSERT(AllProbeBitsMatch(t1,pkl));
TEST_ASSERT(AllProbeBitsMatch(t2,pkl));
TEST_ASSERT(AllProbeBitsMatch(t1.toString(),pkl));
TEST_ASSERT(AllProbeBitsMatch(t2.toString(),pkl));
TEST_ASSERT(AllProbeBitsMatch(t1.toString().c_str(),pkl.c_str()));
TEST_ASSERT(AllProbeBitsMatch(t2.toString().c_str(),pkl.c_str()));
pkl = t2.toString();
TEST_ASSERT(!AllProbeBitsMatch(t1,pkl));
TEST_ASSERT(AllProbeBitsMatch(t2,pkl));
TEST_ASSERT(!AllProbeBitsMatch(t1.toString(),pkl));
TEST_ASSERT(AllProbeBitsMatch(t2.toString(),pkl));
TEST_ASSERT(!AllProbeBitsMatch(t1.toString().c_str(),pkl.c_str()));
TEST_ASSERT(AllProbeBitsMatch(t2.toString().c_str(),pkl.c_str()));
}
void test1DiscreteVect() {
DiscreteValueVect vect1(DiscreteValueVect::ONEBITVALUE, 30);
unsigned int i;
for (i = 0; i < 15; ++i) {
vect1.setVal(2*i, 1);
}
TEST_ASSERT(vect1.getLength() == 30);
TEST_ASSERT(vect1.getTotalVal() == 15);
for (i = 0; i < vect1.getLength(); ++i) {
TEST_ASSERT(vect1.getVal(i) == (i+1)%2);
}
try {
vect1.setVal(28,2);
} catch (ValueErrorException &dexp) {
BOOST_LOG(rdInfoLog) << "Expected failure: " << dexp.message() << "\n";
}
// all these tests should fail if unsigned int changes from being
// 32 bits
DiscreteValueVect vect2(DiscreteValueVect::TWOBITVALUE, 30);
for (i = 0; i < vect2.getLength(); ++i) {
vect2.setVal(i, i%4);
}
for (i = 0; i < vect2.getLength(); ++i) {
TEST_ASSERT(vect2.getVal(i) == i%4);
}
TEST_ASSERT(vect2.getTotalVal() == 43);
try {
vect2.setVal(28,10);
} catch (ValueErrorException &dexp) {
BOOST_LOG(rdInfoLog) << "Expected failure: " << dexp.message() << "\n";
}
DiscreteValueVect vect4(DiscreteValueVect::FOURBITVALUE, 30);
for (i = 0; i < vect4.getLength(); ++i) {
vect4.setVal(i, i%16);
}
for (i = 0; i < vect4.getLength(); ++i) {
TEST_ASSERT(vect4.getVal(i) == i%16);
}
TEST_ASSERT(vect4.getTotalVal() == 211);
try {
vect4.setVal(28,16);
} catch (ValueErrorException &dexp) {
BOOST_LOG(rdInfoLog) << "Expected failure: " << dexp.message() << "\n";
}
DiscreteValueVect vect8(DiscreteValueVect::EIGHTBITVALUE, 32);
for (i = 0; i < vect8.getLength(); ++i) {
vect8.setVal(i, i%256);
}
for (i = 0; i < vect8.getLength(); ++i) {
TEST_ASSERT(vect8.getVal(i) == i%256);
}
TEST_ASSERT(vect8.getTotalVal() == 496);
try {
vect8.setVal(28,257);
} catch (ValueErrorException &dexp) {
BOOST_LOG(rdInfoLog) << "Expected failure: " << dexp.message() << "\n";
}
DiscreteValueVect vect16(DiscreteValueVect::SIXTEENBITVALUE, 300);
for (i = 0; i < vect16.getLength(); ++i) {
vect16.setVal(i, i%300);
}
for (i = 0; i < vect16.getLength(); ++i) {
TEST_ASSERT(vect16.getVal(i) == i%300);
}
TEST_ASSERT(vect16.getTotalVal() == 44850);
vect16.setVal(28,65535);
try {
vect16.setVal(28,65536);
} catch (ValueErrorException &dexp) {
BOOST_LOG(rdInfoLog) << "Expected failure: " << dexp.message() << "\n";
}
}
void test2DiscreteVectDists() {
DiscreteValueVect v1(DiscreteValueVect::ONEBITVALUE, 30);
DiscreteValueVect v2(DiscreteValueVect::ONEBITVALUE, 30);
unsigned int i;
for (i = 0; i < 15; ++i) {
v1.setVal(2*i, 1);
v2.setVal(2*i, 1);
}
TEST_ASSERT(computeL1Norm(v1, v2) == 0);
for (i = 0; i < 30; ++i) {
v2.setVal(i, i%2);
}
TEST_ASSERT(computeL1Norm(v1, v2) == 30);
for (i = 0; i < 30; ++i) {
if (i%3 == 0) {
v2.setVal(i, 1);
} else {
v2.setVal(i,0);
}
}
TEST_ASSERT(computeL1Norm(v1, v2) == 15);
DiscreteValueVect v21(DiscreteValueVect::TWOBITVALUE, 30);
DiscreteValueVect v22(DiscreteValueVect::TWOBITVALUE, 30);
for (i = 0; i < 30; ++i) {
v21.setVal(i, i%4);
v22.setVal(i, i%4);
}
TEST_ASSERT(computeL1Norm(v21, v22) == 0);
for (i = 0; i < 30; ++i) {
v22.setVal(i, (i+1)%4);
}
TEST_ASSERT(computeL1Norm(v21, v22) == 44);
DiscreteValueVect v41(DiscreteValueVect::FOURBITVALUE, 16);
DiscreteValueVect v42(DiscreteValueVect::FOURBITVALUE, 16);
for (i = 0; i < 16; ++i) {
v41.setVal(i, i%16);
v42.setVal(i, i%16);
}
TEST_ASSERT(computeL1Norm(v41, v42) == 0);
for (i = 0; i < 16; ++i) {
v42.setVal(i, i%5);
}
TEST_ASSERT(computeL1Norm(v41, v42) ==90);
DiscreteValueVect v43(v42);
TEST_ASSERT(computeL1Norm(v42, v43) == 0);
DiscreteValueVect v81(DiscreteValueVect::EIGHTBITVALUE, 5);
DiscreteValueVect v82(DiscreteValueVect::EIGHTBITVALUE, 5);
v81.setVal(0, 34); v82.setVal(0, 34);
v81.setVal(1, 167); v82.setVal(1, 167);
v81.setVal(2, 3); v82.setVal(2, 3);
v81.setVal(3, 56); v82.setVal(3, 56);
v81.setVal(4, 128); v82.setVal(4, 128);
TEST_ASSERT(computeL1Norm(v81, v82) == 0);
v82.setVal(0, 14); v82.setVal(1, 67);
v82.setVal(2, 103); v82.setVal(3, 6);
v82.setVal(4, 228);
TEST_ASSERT(computeL1Norm(v81, v82) == 370);
DiscreteValueVect v161(DiscreteValueVect::SIXTEENBITVALUE, 3);
DiscreteValueVect v162(DiscreteValueVect::SIXTEENBITVALUE, 3);
v161.setVal(0, 2345); v162.setVal(0, 2345);
v161.setVal(1, 64578); v162.setVal(1, 64578);
v161.setVal(2, 34); v162.setVal(2, 34);
TEST_ASSERT(computeL1Norm(v161, v162) == 0);
v162.setVal(0, 1345);
v162.setVal(1, 54578);
v162.setVal(2, 10034);
TEST_ASSERT(computeL1Norm(v161, v162) == 21000);
}
void test3DiscreteVectPickles() {
DiscreteValueVect v1(DiscreteValueVect::ONEBITVALUE, 30);
unsigned int i;
for (i = 0; i < 15; ++i) {
v1.setVal(2*i, 1);
}
DiscreteValueVect v2(v1.toString());
TEST_ASSERT(computeL1Norm(v1, v2) == 0);
DiscreteValueVect v21(DiscreteValueVect::TWOBITVALUE, 30);
for (i = 0; i < 30; ++i) {
v21.setVal(i, i%4);
}
DiscreteValueVect v22(v21.toString());
TEST_ASSERT(computeL1Norm(v21, v22) == 0);
DiscreteValueVect v41(DiscreteValueVect::FOURBITVALUE, 16);
for (i = 0; i < 16; ++i) {
v41.setVal(i, i%16);
}
DiscreteValueVect v42(v41.toString());
TEST_ASSERT(computeL1Norm(v41, v42) == 0);
DiscreteValueVect v81(DiscreteValueVect::EIGHTBITVALUE, 5);
v81.setVal(0, 34);
v81.setVal(1, 167);
v81.setVal(2, 3);
v81.setVal(3, 56);
v81.setVal(4, 128);
DiscreteValueVect v82(v81.toString());
TEST_ASSERT(computeL1Norm(v81, v82) == 0);
DiscreteValueVect v161(DiscreteValueVect::SIXTEENBITVALUE, 3);
v161.setVal(0, 2345);
v161.setVal(1, 64578);
v161.setVal(2, 34);
DiscreteValueVect v162(v161.toString());
TEST_ASSERT(computeL1Norm(v161, v162) == 0);
}
void test4DiscreteVectOps1() {
DiscreteValueVect vect1(DiscreteValueVect::ONEBITVALUE, 8);
for (unsigned int i = 0; i < 4; ++i) {
vect1.setVal(2*i, 1);
}
TEST_ASSERT(vect1.getLength() == 8);
TEST_ASSERT(vect1.getTotalVal() == 4);
DiscreteValueVect vect2(DiscreteValueVect::ONEBITVALUE, 8);
for (unsigned int i = 0; i < 4; ++i) {
vect2.setVal(2*i+1, 1);
}
TEST_ASSERT(vect2.getTotalVal() == 4);
DiscreteValueVect vect3=vect1&vect2;
TEST_ASSERT(vect3.getLength() == 8);
TEST_ASSERT(vect3.getTotalVal() == 0);
DiscreteValueVect vect4=vect1|vect2;
TEST_ASSERT(vect4.getLength() == 8);
TEST_ASSERT(vect4.getTotalVal() == 8);
#if 0
DiscreteValueVect vect5=~vect1;
TEST_ASSERT(vect5.getLength() == 8);
TEST_ASSERT(vect5.getTotalVal() == 4);
TEST_ASSERT((vect5&vect1).getTotalVal()==0);
TEST_ASSERT((vect5&vect2).getTotalVal()==4);
#endif
}
void test5DiscreteVectOps2() {
DiscreteValueVect vect1(DiscreteValueVect::TWOBITVALUE, 8);
for (unsigned int i = 0; i < 4; ++i) {
vect1.setVal(2*i, 2);
}
TEST_ASSERT(vect1.getLength() == 8);
TEST_ASSERT(vect1.getTotalVal() == 8);
DiscreteValueVect vect2(DiscreteValueVect::TWOBITVALUE, 8);
for (unsigned int i = 0; i < 4; ++i) {
vect2.setVal(2*i+1, 2);
vect2.setVal(2*i, 1);
}
TEST_ASSERT(vect2.getTotalVal() == 12);
DiscreteValueVect vect3=vect1&vect2;
TEST_ASSERT(vect3.getLength() == 8);
TEST_ASSERT(vect3.getTotalVal() == 4);
DiscreteValueVect vect4=vect1|vect2;
TEST_ASSERT(vect4.getLength() == 8);
TEST_ASSERT(vect4.getTotalVal() == 16);
DiscreteValueVect vect5=vect1+vect2;
TEST_ASSERT(vect5.getLength() == 8);
TEST_ASSERT(vect5.getTotalVal() == 20);
vect5=vect1-vect2;
TEST_ASSERT(vect5.getTotalVal()==4);
vect5=vect2-vect1;
TEST_ASSERT(vect5.getTotalVal()==8);
#if 0
DiscreteValueVect vect5=~vect1;
TEST_ASSERT(vect5.getLength() == 8);
TEST_ASSERT(vect5.getTotalVal() == 16);
TEST_ASSERT((vect5&vect1).getTotalVal()==4);
TEST_ASSERT((vect5&vect2).getTotalVal()==12);
#endif
}
void test6SparseIntVect() {
SparseIntVect<int> iVect(255);
TEST_ASSERT(iVect.getLength() == 255);
TEST_ASSERT(iVect.getVal(23) ==0);
iVect.setVal(23,14);
TEST_ASSERT(iVect.getVal(23) ==14);
SparseIntVect<int> oVect(iVect);
TEST_ASSERT(oVect.getLength() == 255);
TEST_ASSERT(oVect.getVal(23) ==14);
std::vector<int> tmpV(3);
tmpV[0]=1;
tmpV[1]=5;
tmpV[2]=1;
TEST_ASSERT(iVect.getVal(1) ==0);
TEST_ASSERT(iVect[1] ==0);
TEST_ASSERT(iVect.getVal(5) ==0);
TEST_ASSERT(iVect[5] ==0);
updateFromSequence(iVect,tmpV);
TEST_ASSERT(iVect.getVal(1) ==2);
TEST_ASSERT(iVect[1] ==2);
TEST_ASSERT(iVect.getVal(5) ==1);
TEST_ASSERT(iVect[5] ==1);
iVect.setVal(3,-4);
TEST_ASSERT(iVect.getTotalVal()==13);
try {
iVect.setVal(-1,13);
TEST_ASSERT(0);
} catch (IndexErrorException &dexp) {
;
}
try {
iVect.setVal(255,42);
TEST_ASSERT(0);
} catch (IndexErrorException &dexp) {
;
}
try {
iVect.getVal(-1);
TEST_ASSERT(0);
} catch (IndexErrorException &dexp) {
;
}
try {
iVect.getVal(255);
TEST_ASSERT(0);
} catch (IndexErrorException &dexp) {
;
}
try {
iVect[-1];
TEST_ASSERT(0);
} catch (IndexErrorException &dexp) {
;
}
{
SparseIntVect<int> iV1(5);
iV1.setVal(4,4);
iV1.setVal(0,2);
iV1.setVal(3,1);
SparseIntVect<int>::StorageType::const_iterator iter=iV1.getNonzeroElements().begin();
TEST_ASSERT(iter->first==0);
TEST_ASSERT(iter->second==2);
++iter;
TEST_ASSERT(iter->first==3);
TEST_ASSERT(iter->second==1);
++iter;
TEST_ASSERT(iter->first==4);
TEST_ASSERT(iter->second==4);
++iter;
TEST_ASSERT(iter==iV1.getNonzeroElements().end());
TEST_ASSERT(feq(DiceSimilarity(iV1,iV1),1.));
}
{ // iV1 &= iV2
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
TEST_ASSERT(feq(DiceSimilarity(iV1,iV2),18./26.));
iV1 &= iV2;
TEST_ASSERT(iV1[0]==0);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==6);
TEST_ASSERT(feq(DiceSimilarity(iV1,iV2),18./24.));
TEST_ASSERT(feq(TverskySimilarity(iV1,iV2,0.5,0.5,false),9./12.));
TEST_ASSERT(feq(TverskySimilarity(iV1,iV2,1.0,1.0,false),9./15.));
TEST_ASSERT(feq(TanimotoSimilarity(iV1,iV2),9./15.));
TEST_ASSERT(feq(TverskySimilarity(iV1,iV2,0.333333333,0.66666666667,false),9./13.));
TEST_ASSERT(feq(TverskySimilarity(iV1,iV2,1.0,0.0,false),9./9.));
try {
iV1 &= iVect;
TEST_ASSERT(0);
} catch (ValueErrorException &dexp) {
;
}
}
{ // iV3 = iv1&iV2
SparseIntVect<int> iV1(5),iV2(5),iV3(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV3 = iV1 & iV2;
TEST_ASSERT(iV3[0]==0);
TEST_ASSERT(iV3[1]==0);
TEST_ASSERT(iV3[2]==1);
TEST_ASSERT(iV3[3]==4);
TEST_ASSERT(iV3[4]==4);
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==6);
}
{ // iV2 &= iV1
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV2 &= iV1;
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==0);
TEST_ASSERT(iV2[2]==1);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==4);
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
try {
iV2 &= iVect;
TEST_ASSERT(0);
} catch (ValueErrorException &dexp) {
;
}
}
{ // iV1 |= iV2
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV1 |= iV2;
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==2);
TEST_ASSERT(iV1[2]==3);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==6);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==6);
try {
iV1 |= iVect;
TEST_ASSERT(0);
} catch (ValueErrorException &dexp) {
;
}
}
{ // iV3 = iv1 |iV2
SparseIntVect<int> iV1(5),iV2(5),iV3(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV3 = iV1 | iV2;
TEST_ASSERT(iV3[0]==2);
TEST_ASSERT(iV3[1]==2);
TEST_ASSERT(iV3[2]==3);
TEST_ASSERT(iV3[3]==4);
TEST_ASSERT(iV3[4]==6);
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==6);
}
{ // iV2 |= iV1
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV2 |= iV1;
TEST_ASSERT(iV2[0]==2);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==6);
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
}
{ // iV1 += iV2
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,-4);
iV2.setVal(4,6);
iV1 += iV2;
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==2);
TEST_ASSERT(iV1[2]==4);
TEST_ASSERT(iV1[3]==0);
TEST_ASSERT(iV1[4]==10);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==-4);
TEST_ASSERT(iV2[4]==6);
}
{ // iV3 = IV1 + iV2
SparseIntVect<int> iV1(5),iV2(5),iV3(5);
iV1.setVal(2,1);
iV1.setVal(0,2);
iV1.setVal(4,4);
iV1.setVal(3,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,-4);
iV2.setVal(4,6);
iV3=iV1+iV2;
TEST_ASSERT(iV3[0]==2);
TEST_ASSERT(iV3[1]==2);
TEST_ASSERT(iV3[2]==4);
TEST_ASSERT(iV3[3]==0);
TEST_ASSERT(iV3[4]==10);
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==-4);
TEST_ASSERT(iV2[4]==6);
}
{ // iV1 -= iV2
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV1 -= iV2;
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==-2);
TEST_ASSERT(iV1[2]==-2);
TEST_ASSERT(iV1[3]==0);
TEST_ASSERT(iV1[4]==-2);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[4]==6);
TEST_ASSERT(iV2[3]==4);
}
{ // iV3 = IV1 - iV2
SparseIntVect<int> iV1(5),iV2(5),iV3(5);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(3,4);
iV2.setVal(4,6);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV3=iV1-iV2;
TEST_ASSERT(iV3[0]==2);
TEST_ASSERT(iV3[1]==-2);
TEST_ASSERT(iV3[2]==-2);
TEST_ASSERT(iV3[3]==0);
TEST_ASSERT(iV3[4]==-2);
TEST_ASSERT(iV1[0]==2);
TEST_ASSERT(iV1[1]==0);
TEST_ASSERT(iV1[2]==1);
TEST_ASSERT(iV1[3]==4);
TEST_ASSERT(iV1[4]==4);
TEST_ASSERT(iV2[0]==0);
TEST_ASSERT(iV2[1]==2);
TEST_ASSERT(iV2[2]==3);
TEST_ASSERT(iV2[3]==4);
TEST_ASSERT(iV2[4]==6);
}
{ // operator== and operator!=
SparseIntVect<int> iV1(5),iV2(5),iV3(3);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(1,2);
iV2.setVal(2,3);
iV2.setVal(3,4);
iV2.setVal(4,6);
TEST_ASSERT(iV1==iV1);
TEST_ASSERT(iV2==iV2);
TEST_ASSERT(iV3==iV3);
TEST_ASSERT(iV1!=iV2);
TEST_ASSERT(iV1!=iV3);
TEST_ASSERT(iV2!=iV1);
TEST_ASSERT(iV3!=iV1);
TEST_ASSERT(iV1!=iV3);
}
{ //test negative values (was sf.net Issue 3295215)
SparseIntVect<int> iV1(5),iV2(5);
iV1.setVal(0,-2);
iV1.setVal(2,1);
iV1.setVal(3,-4);
iV1.setVal(4,4);
iV2.setVal(1,-2);
iV2.setVal(2,3);
iV2.setVal(3,-4);
iV2.setVal(4,6);
TEST_ASSERT(feq(DiceSimilarity(iV1,iV2),18./26.));
}
}
void test7SparseIntVectPickles() {
{
SparseIntVect<int> iV1(5),iV2(3);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV1.setVal(4,4);
iV2.setVal(2,3);
TEST_ASSERT(iV1!=iV2);
std::string pkl;
pkl = iV1.toString();
iV2.fromString(pkl);
TEST_ASSERT(iV1==iV2);
}
{
SparseIntVect<char> iV1(5);
SparseIntVect<int>iV2(3);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
iV2.setVal(1,1);
std::string pkl;
pkl = iV1.toString();
iV2.fromString(pkl);
TEST_ASSERT(iV2.getLength()==iV1.getLength());
TEST_ASSERT(iV2[0]==2)
TEST_ASSERT(iV2[1]==0)
TEST_ASSERT(iV2[2]==1)
TEST_ASSERT(iV2[3]==4)
}
{
SparseIntVect<int> iV1(5);
SparseIntVect<char>iV2(3);
iV1.setVal(0,2);
iV1.setVal(2,1);
iV1.setVal(3,4);
std::string pkl;
pkl = iV1.toString();
try{
iV2.fromString(pkl);
TEST_ASSERT(0);
} catch (ValueErrorException &dexp) {
;
}
}
}
void test8BitVectPickles() {
#if 0
{
std::string dirName = getenv("RDBASE");
dirName+="/Code/DataStructs/testData/";
std::string pklName = dirName+"test1.bin";
std::ofstream outS;
outS.open(pklName.c_str(),std::ios_base::binary);
ExplicitBitVect bv(32);
for(int i=0;i<32;i+=2){
bv.setBit(i);
}
std::string pkl=bv.toString();
unsigned int sz=pkl.size();
outS<<sz;
outS<<pkl;
outS.close();
}
#endif
{
std::string dirName = getenv("RDBASE");
dirName+="/Code/DataStructs/testData/";
std::string pklName = dirName+"test1.bin";
std::ifstream inS;
inS.open(pklName.c_str(),std::ios_base::binary);
unsigned int length;
inS >> length;
char *buff = new char[length];
length=inS.readsome(buff,length);
inS.close();
std::string pkl(buff,length);
delete [] buff;
ExplicitBitVect bv(pkl);
TEST_ASSERT(bv.getNumBits()==32);
TEST_ASSERT(bv.getNumOnBits()==16);
TEST_ASSERT(bv[0]);
TEST_ASSERT(!bv[1]);
}
}
int main(){
RDLog::InitLogs();
try{
throw IndexErrorException(3);
} catch (IndexErrorException) {
BOOST_LOG(rdInfoLog) << "pass" << endl;
}
stringstream ss(ios_base::binary|ios_base::out|ios_base::in);
int v1=4,v2=5,v3,v4;
ss.write((const char *)&v1,sizeof(v1));
ss.write((const char *)&v2,sizeof(v2));
#if 0
ss.close();
fstream ss2("blah.bin",ios_base::binary|ios_base::in);
ss2.read((char *)&v3,sizeof(v3));
ss2.read((char *)&v4,sizeof(v4));
#endif
ss.seekp(0,ios_base::beg);
ss.read((char *)&v3,sizeof(v3));
ss.read((char *)&v4,sizeof(v4));
TXTMSG("v3",v3);
TXTMSG("v4",v4);
BOOST_LOG(rdInfoLog) << " SPARSE -----------------------------------" << std::endl;
SparseBitVect sparseFoo(10);
Test(sparseFoo);
TaniTest(sparseFoo);
ProbeTest(sparseFoo);
BOOST_LOG(rdInfoLog) << " Explicit ----------------------------------" << std::endl;
ExplicitBitVect explicitFoo(10);
Test(explicitFoo);
TaniTest(explicitFoo);
BOOST_LOG(rdInfoLog) << " Done" << std::endl;
BOOST_LOG(rdInfoLog) << " Test DiscreteValue Vectors 1 ----------------------------" << endl;
test1DiscreteVect();
BOOST_LOG(rdInfoLog) << " Test DiscreteValue Vectors 2 ------------------------------" << endl;
test2DiscreteVectDists();
BOOST_LOG(rdInfoLog) << " Test DiscreteValue Vectors 3 ---------------------------" << endl;
test3DiscreteVectPickles();
BOOST_LOG(rdInfoLog) << " Test DiscreteValue Operations -----------------------------" << endl;
test4DiscreteVectOps1();
BOOST_LOG(rdInfoLog) << " Test DiscreteValue Operations 2 -------------------------- "<< endl;
test5DiscreteVectOps2();
BOOST_LOG(rdInfoLog) << " Test SparseIntVect ------------------------------------" << std::endl;
test6SparseIntVect();
BOOST_LOG(rdInfoLog) << " Test SparseIntVect Serialization --------------------------" << std::endl;
test7SparseIntVectPickles();
BOOST_LOG(rdInfoLog) << " Test BitVect Serialization -------------------------------" << std::endl;
test8BitVectPickles();
return 0;
}
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