Files
rdkit/Code/JavaWrappers/csharp_wrapper/CMakeLists.txt
Brian Kelley cf269aa813 Expose CDX support to FileParsers and ChemDraw to SWIG (#8681)
* Fist pass at CDX support

* Enable CDX support for reading (also) in the CDXMLParser API

* Add cdxml test files

* Update swig wrappers for CDXMLFormat and Parameters

* Add constructor to ChemDrawParserParams

* Add Java SWIG support for ChemDraw

* Add chemdraw define to rdconfig

* Add missing chemdraw deps

* Remove direct expat link

* Fix Java linkages for ChemDraw

* Remove bad merge code

* Remove bad merge code

* Fix csharp builds

* Add sniffer for the ChemDraw DataStream

* Include filesystem

* Fix test on windows

* Add more CDX tests

* Ensure streams are open in binary mode to support CDX on windows

* Fix text to show that a Block is the text input, not a file

* Fix CSharp test

* Disable CDX tests when not building chemdraw

* Turn back on chemdraw

* Response to review

* Turn off chemdraw support for the limited external test

---------

Co-authored-by: Brian Kelley <bkelley@glysade.com>
2025-08-29 04:39:22 +02:00

145 lines
4.7 KiB
CMake

project (GraphMolCSharp)
include_directories( ${RDKit_ExternalDir} )
SET_SOURCE_FILES_PROPERTIES(GraphMolCSharp.i PROPERTIES CPLUSPLUS ON )
# Setup a few variables for environment-specific things
if(MSVC)
ADD_COMPILE_OPTIONS(/W3 /wd4716 /bigobj)
SET(PATH_SEP ";")
SET(COPY_CMD xcopy ${COPY_SOURCE} ${COPY_DEST} /Y /I)
else()
SET(PATH_SEP ":")
SET(COPY_CMD cp -p ${COPY_SOURCE} ${COPY_DEST})
endif()
# Coax SWIG into playing nicely with Apple/ARM environments
set(HAS_ARM_PROC FALSE)
string(TOLOWER ${CMAKE_SYSTEM_PROCESSOR} LOWERCASE_SYS_PROC)
if(LOWERCASE_SYS_PROC MATCHES "arm")
set(HAS_ARM_PROC TRUE)
endif()
# Based on https://github.com/mono/mono/blob/5d2e3bc3b3c8184d35b2f7801e88d96470d367c4/mcs/mcs/settings.cs#L54
# Mono seems to only support 32-bit ARM
if(APPLE OR HAS_ARM_PROC)
SET(CMAKE_SIZEOF_VOID_P 4)
endif()
if(CMAKE_SIZEOF_VOID_P EQUAL 4)
SET(CMAKE_SWIG_FLAGS -namespace "GraphMolWrap")
if(HAS_ARM_PROC)
SET(PLATFORM "arm")
else()
SET(PLATFORM "x86")
endif()
else()
SET(PLATFORM "x64")
if (WIN32)
SET(CMAKE_SWIG_FLAGS -namespace "GraphMolWrap")
else()
SET(CMAKE_SWIG_FLAGS -namespace "GraphMolWrap" "-DSWIGWORDSIZE64")
endif()
endif()
SET(CMAKE_SWIG_OUTDIR ${CMAKE_CURRENT_SOURCE_DIR}/swig_csharp )
if(RDK_BUILD_INCHI_SUPPORT)
SET(CMAKE_SWIG_FLAGS "-DRDK_BUILD_INCHI_SUPPORT" ${CMAKE_SWIG_FLAGS} )
endif()
if(RDK_BUILD_AVALON_SUPPORT)
SET(CMAKE_SWIG_FLAGS "-DRDK_BUILD_AVALON_SUPPORT" ${CMAKE_SWIG_FLAGS} )
endif()
if(RDK_USE_BOOST_IOSTREAMS)
SET(CMAKE_SWIG_FLAGS "-DRDK_USE_BOOST_IOSTREAMS" ${CMAKE_SWIG_FLAGS} )
endif()
if (RDK_BUILD_CAIRO_SUPPORT)
SET(CMAKE_SWIG_FLAGS "-DRDK_BUILD_CAIRO_SUPPORT" ${CMAKE_SWIG_FLAGS} )
endif()
if (RDK_BUILD_CHEMDRAW_SUPPORT)
SET(CMAKE_SWIG_FLAGS "-DRDK_BUILD_CHEMDRAW_SUPPORT" ${CMAKE_SWIG_FLAGS} )
endif()
FILE(GLOB SWIG_SRC_FILES "${CMAKE_CURRENT_SOURCE_DIR}/../*.i")
# we added all source files, now remove the ones that we're not supporting in this build:
if(NOT RDK_BUILD_AVALON_SUPPORT)
LIST(REMOVE_ITEM SWIG_SRC_FILES "${CMAKE_CURRENT_SOURCE_DIR}/../AvalonLib.i")
endif()
if(NOT RDK_BUILD_INCHI_SUPPORT)
LIST(REMOVE_ITEM SWIG_SRC_FILES "${CMAKE_CURRENT_SOURCE_DIR}/../Inchi.i")
endif()
if(NOT RDK_BUILD_CHEMDRAW_SUPPORT)
LIST(REMOVE_ITEM SWIG_SRC_FILES "${CMAKE_CURRENT_SOURCE_DIR}/../ChemDraw.i")
endif()
SET(SWIG_MODULE_RDKFuncs_EXTRA_DEPS ${SWIG_SRC_FILES} )
SWIG_ADD_LIBRARY(RDKFuncs TYPE MODULE LANGUAGE CSharp SOURCES GraphMolCSharp.i )
# it doesnt seem like the threading libs should need to be here, but
# as of Oct 2012 using boost 1.51 under at least ubuntu 12.04 we get a
# link error if they aren't there.
if(RDK_BUILD_CHEMDRAW_SUPPORT)
SWIG_LINK_LIBRARIES(RDKFuncs ${RDKit_Wrapper_Libs}
rdkit_base ${RDKit_THREAD_LIBS} ChemDraw expat)
else ()
SWIG_LINK_LIBRARIES(RDKFuncs ${RDKit_Wrapper_Libs}
rdkit_base ${RDKit_THREAD_LIBS})
endif()
INSTALL(TARGETS RDKFuncs
DESTINATION ${CMAKE_CURRENT_SOURCE_DIR} )
if (RDK_BUILD_DOTNET_CSHARP_TESTS OR MSVC)
find_program(DOTNET_EXE dotnet)
if (NOT DOTNET_EXE)
MESSAGE("dotnet (executable) is not found. Pleae add it to PATH and rerun cmake.")
MESSAGE(FATAL_ERROR "Cannot find required executable dotnet")
endif (NOT DOTNET_EXE)
ADD_CUSTOM_COMMAND(
OUTPUT RDKitDotNetLib SYMBOLIC
COMMAND ${CMAKE_COMMAND} -E copy $<TARGET_FILE:RDKFuncs> ${CMAKE_CURRENT_SOURCE_DIR}
COMMAND ${DOTNET_EXE} build RDKitDotNetCore.sln
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
DEPENDS RDKFuncs
)
ADD_CUSTOM_TARGET(RDKitDotNet ALL
DEPENDS RDKFuncs RDKitDotNetLib
COMMENT "Building RDKit DotNet project"
)
ADD_TEST(
NAME CSharpTests
COMMAND ${DOTNET_EXE} test RDKitDotNetCore.sln "-l:console$<SEMICOLON>verbosity=normal"
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
)
else(RDK_BUILD_DOTNET_CSHARP_TESTS OR MSVC)
# find the mcs executable on non-windows systems, if dotnet is not used:
find_program(GMCS_EXE mcs)
if (NOT GMCS_EXE)
MESSAGE ("mcs (executable) is not found. Please add it to PATH and rerun cmake.")
MESSAGE(FATAL_ERROR "Cannot find required executable mcs")
endif (NOT GMCS_EXE)
# code adapted from the wrapper code for
# GDCM: http://gdcm.svn.sf.net/viewvc/gdcm/trunk/Wrapping/Java/CMakeLists.txt?view=markup
ADD_CUSTOM_COMMAND(
OUTPUT ${CMAKE_CURRENT_SOURCE_DIR}/RDKit2DotNet.dll
## 1. run this custom command only after swig has been run.
COMMAND ${GMCS_EXE} -platform:${PLATFORM} -out:RDKit2DotNet.dll -t:library "swig_csharp/*.cs"
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
DEPENDS "${swig_generated_file_fullname}"
)
ADD_CUSTOM_TARGET(RDKFuncsDLL ALL
DEPENDS RDKFuncs ${CMAKE_CURRENT_SOURCE_DIR}/RDKit2DotNet.dll
COMMENT "building mono dll"
)
endif(RDK_BUILD_DOTNET_CSHARP_TESTS OR MSVC)