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8176f5c962
* enable Werror on Mac and Linux * do not fail on boost multiprecision pessimizing move * fix eigen array_bounds warning * Fix unused arg in Rascal MCS * fix range-loop-construct warning in Rascal MCES * fix sign mismatched comparison * drop unused lambda capture * allow FMCS timeout test more time under Debug (not a warning!) * fix fwd declaration of struct RascalClusterOptions * fix deallocator mismatch * fix two minor leaks * fix a real leak * more minor leaks * fix another real leak, plus some potential ones * fix std::move preventing copy ellision * allow longer run time for debug builds * make maxBondMatchPairs and getLargestFragSize unsigned int * make snake case camel case * update to current master, fix new warnings * update again and more fixes * add #include <optional> * fix char array deallocation * update and fixes in Marvin writer * unsigned int * more copy ellision fixes * more copy ellision fixes, and typos * and some more
51 lines
2.0 KiB
C++
51 lines
2.0 KiB
C++
//
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// Copyright (C) David Cosgrove 2023
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//
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// @@ All Rights Reserved @@
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// This file is part of the RDKit.
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// The contents are covered by the terms of the BSD license
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// which is included in the file license.txt, found at the root
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// of the RDKit source tree.
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//
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#include <RDGeneral/export.h>
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#ifndef RASCALOPTIONS_H
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#define RASCALOPTIONS_H
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namespace RDKit {
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namespace RascalMCES {
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struct RDKIT_RASCALMCES_EXPORT RascalOptions {
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double similarityThreshold =
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0.7; // if calculated below this, no MCES will be evaluated.
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bool completeAromaticRings =
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true; // if true, partial aromatic rings won't be returned
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bool ringMatchesRingOnly =
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false; // if true, ring bonds won't match non-ring bonds
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bool singleLargestFrag =
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false; /* if true, only return a single fragment for the MCES. Default
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is to produce multiple matching fragments if necessary. */
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int minFragSize =
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-1; /* minimum number of atoms in any fragment - -1 means no minimum */
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int maxFragSeparation = -1; /* biggest through-bond distance that bonds can
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match. -1 means no limit. */
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bool allBestMCESs =
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false; /* If true, all MCESs are returned, in order of diminishing score.
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This is likely to result in higher run times. */
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int timeout = 60; // max run time, in seconds. -1 means no max.
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bool doEquivBondPruning =
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false; /* This might make the code run a bit faster in some
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circumstances, but on average it is very marginal. */
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bool returnEmptyMCES = false; /* if true, if the similarity thresholds aren't
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matched still return a RascalResult with the
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tier1 and tier2 sims filled in. */
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unsigned int maxBondMatchPairs = 1000; /* Too many matching bond (vertex)
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pairs can cause it to run out of memory. This
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is a reasonable default for my Mac. */
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};
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} // namespace RascalMCES
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} // namespace RDKit
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#endif // RASCALOPTIONS_H
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