Add citation in README.md

README.md

@@ -300,3 +300,20 @@ Set the path to your AlphaFold databases:
 ```yaml
 databases_directory: "/path/to/alphafold/databases"
 ```
+
+## How to Cite
+
+If AlphaPulldown contributed significantly to your research, please cite the corresponding publication in *Bioinformatics*:
+
+```bibtex
+@article{Molodenskiy2025AlphaPulldown2,
+  author    = {Molodenskiy, Dmitry and Maurer, Valentin J. and Yu, Dingquan and Chojnowski, Grzegorz and Bienert, Stefan and Tauriello, Gerardo and Gilep, Konstantin and Schwede, Torsten and Kosinski, Jan},
+  title     = {AlphaPulldown2—a general pipeline for high-throughput structural modeling},
+  journal   = {Bioinformatics},
+  volume    = {41},
+  number    = {3},
+  pages     = {btaf115},
+  year      = {2025},
+  doi       = {10.1093/bioinformatics/btaf115}
+}
+```