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Fix AF3 homomer gapped-chain JSON expectation

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Dima
2026-03-25 19:40:06 +01:00
parent 89d2625120
commit da63ed78ca
1 changed files with 4 additions and 9 deletions
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13
test/check_alphafold3_predictions.py
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@@ -1653,15 +1653,10 @@ class TestAlphaFold3RunModes(_TestBase):
for sequence_entry in written.get("sequences", [])
if "protein" in sequence_entry
]
self.assertLen(protein_entries, 2)
self.assertEqual(
[entry["sequence"] for entry in protein_entries],
[expected_sequence, expected_sequence],
)
self.assertEqual(
[entry["residueIds"] for entry in protein_entries],
[expected_residue_ids, expected_residue_ids],
)
self.assertLen(protein_entries, 1)
self.assertEqual(protein_entries[0]["id"], ["A", "B"])
self.assertEqual(protein_entries[0]["sequence"], expected_sequence)
self.assertEqual(protein_entries[0]["residueIds"], expected_residue_ids)
print("✓ AF3 input keeps two copied out-of-order gapped regions as two chains")