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AlphaPulldown/test/test_data/features
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Dima 2223191a05 Add issue #588 AF3 regression fixtures and tests
2026-03-27 14:10:54 +01:00
..
3L4Q_A.3L4Q.cif.A
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_C.3L4Q.pdb.C
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A075B6L2
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
af2_features
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
af3_features
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
GAPPY_PDB_B.GAPPY_PDB.pdb.B
Regenerate all pickles
2024-07-29 16:37:16 +02:00
hetatoms_A.hetatoms.pdb.A
Regenerate all pickles
2024-07-29 16:37:16 +02:00
issue_588
Add issue #588 AF3 regression fixtures and tests
2026-03-27 14:10:54 +01:00
P61626
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
RANdom_name1_.7-1_0_B.RANdom_name1_.7-1_0.pdb.B
Regenerate all pickles
2024-07-29 16:37:16 +02:00
RANdom_name1_.7-1_0_C.RANdom_name1_.7-1_0.pdb.C
Regenerate all pickles
2024-07-29 16:37:16 +02:00
TEST
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_A.3L4Q.cif.A_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_A.3L4Q.cif.A_feature_metadata_2024-09-05.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_A.3L4Q.cif.A.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_A.3L4Q.pdb.A_feature_metadata_2024-09-05.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_C.3L4Q.pdb.C_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_C.3L4Q.pdb.C_feature_metadata_2024-09-05.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
3L4Q_C.3L4Q.pdb.C.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8_feature_metadata_2025-03-20.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8_feature_metadata_2025-03-21.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8_orig.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8_RNA.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8+P61626_orig2.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A024R1R8+P61626_orig.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A075B6L2_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A075B6L2_RNA_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A075B6L2_RNA.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
A0A075B6L2.pkl
Regenerate all pickles
2024-07-29 16:37:16 +02:00
dna.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
GAPPY_PDB_B.GAPPY_PDB.pdb.B_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
GAPPY_PDB_B.GAPPY_PDB.pdb.B.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
hetatoms_A.hetatoms.pdb.A_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
hetatoms_A.hetatoms.pdb.A.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
ligand.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
P01308_af3_input.json
Added --debug_msas for af3 backend. Pass MultimericObject.feature_dict['msa'] as is to af3
2025-08-28 11:16:50 +02:00
P61626_af3_input.json
Added --debug_msas for af3 backend. Pass MultimericObject.feature_dict['msa'] as is to af3
2025-08-28 11:16:50 +02:00
P61626_feature_metadata_2025-03-20.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
P61626_feature_metadata_2025-03-21.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
P61626_orig.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
P61626.dimer.orig.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
P61626.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
protein_with_ptms.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
RANdom_name1_.7-1_0_B.RANdom_name1_.7-1_0.pdb.B_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
RANdom_name1_.7-1_0_B.RANdom_name1_.7-1_0.pdb.B.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
RANdom_name1_.7-1_0_C.RANdom_name1_.7-1_0.pdb.C_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
RANdom_name1_.7-1_0_C.RANdom_name1_.7-1_0.pdb.C.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
ribosomal_no_pair_msa.json
Added --debug_msas for af3 backend. Pass MultimericObject.feature_dict['msa'] as is to af3
2025-08-28 11:16:50 +02:00
rna.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
Rribosomal_af3_input.json
Added --debug_msas for af3 backend. Pass MultimericObject.feature_dict['msa'] as is to af3
2025-08-28 11:16:50 +02:00
SIMPLE_TEST.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
test_alphafold3_prediction.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
test_alphafoldserver_prediction.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
test_complex.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
TEST_feature_metadata_2024-07-29.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
TEST_fixed.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
test_input.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
test_server_input.json
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00
TEST.pkl
AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues
2025-08-12 14:04:33 +02:00