mirror of
https://github.com/KosinskiLab/AlphaPulldown.git
synced 2026-06-04 14:14:24 +08:00
fc41c1a5eb
- Strip _entity_poly_seq from generated template mmCIF so AF3 reconstructs _pdbx_poly_seq_scheme from _atom_site, avoiding UNK/gap mismatches - Build query_to_template_map using only residues with atoms to prevent OOB indexing in template features - Add --debug_templates flag to optionally dump generated template mmCIFs into templates_debug/ - Keep templates enabled; test test__chopped_dimer now passes
21 lines
412 B
JSON
Executable File
21 lines
412 B
JSON
Executable File
[{
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"name": "test_protein_rna",
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"modelSeeds": ["42"],
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"sequences": [
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{
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"proteinChain": {
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"sequence": "MSSHEGGKKKALKQPKKQAKEMDEEEKAFKQKQKEEQKKLEVLKAKVVGKGPLATGGIKKSGKK",
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"count": 1,
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"useStructureTemplate": true
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}
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},
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{
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"dnaSequence": {
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"sequence": "GATTACA",
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"count": 1
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}
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}
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],
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"dialect": "alphafoldserver",
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"version": 1
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}] |