update setup.py requirements

2026-06-04 15:04:24 +08:00 · 2022-06-28 11:31:59 -04:00
parent 4709920774
commit 128d360c03
3 changed files with 6 additions and 3 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,9 @@

 ## v0.2

+### v0.2.1
+- Add biopython to setup.py
+
 ### v0.2.0

 - Integrate Topsy-Turvy to allow for top-down supervision
--- a/dscript/init.py
+++ b/dscript/init.py
@@ -1,4 +1,4 @@
-__version__ = "0.2.0"
+__version__ = "0.2.1"
 __citation__ = """Sledzieski, Singh, Cowen, Berger. "D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions." Cell Systems 12, no. 10 (2021): 969-982.

 Devkota, Singh, Sledzieski, Berger, Cowen, Topsy-Turvy: integrating a global view into sequence-based PPI prediction, Bioinformatics, In Press."""
--- a/setup.py
+++ b/setup.py
@@ -22,8 +22,8 @@ setup(
        "numpy",
        "scipy",
        "pandas",
-        "torch",
-	"biopython",
+        "torch>=1.11",
+        "biopython",
        "matplotlib",
        "seaborn",
        "tqdm",