update api for new predict commands

docs/source/api/dscript.commands.rst

@@ -1,16 +1,6 @@
 dscript.commands
 ================
 
-dscript.commands.predict
-------------------------
-
-See `Prediction <../usage.html#prediction>`_ for full usage details.
-
-.. automodule:: dscript.commands.predict
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
 dscript.commands.embed
 ----------------------
 
@@ -21,6 +11,21 @@ See `Embedding <../usage.html#embedding>`_ for full usage details.
    :undoc-members:
    :show-inheritance:
 
+dscript.commands.predict
+------------------------
+
+See `Prediction <../usage.html#prediction>`_ for full usage details.
+
+.. automodule:: dscript.commands.predict_block
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+.. automodule:: dscript.commands.predict_serial
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 dscript.commands.train
 ----------------------
 
@@ -40,3 +45,13 @@ See `Evaluation <../usage.html#evaluation>`_ for full usage details.
    :members:
    :undoc-members:
    :show-inheritance:
+
+dscript.commands.extract_3di
+-------------------------
+
+See `Extract 3Di <../usage.html#extract_3di>`_ for full usage details.
+
+.. automodule:: dscript.commands.extract_3di
+   :members:
+   :undoc-members:
+   :show-inheritance:

docs/source/api/index.rst

@@ -23,6 +23,22 @@ dscript.fasta
    :undoc-members:
    :show-inheritance:
 
+dscript.foldseek
+-------------
+
+.. automodule:: dscript.foldseek
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+dscript.glider
+-------------
+
+.. automodule:: dscript.glider
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 dscript.language\_model
 -----------------------
 
@@ -31,6 +47,22 @@ dscript.language\_model
    :undoc-members:
    :show-inheritance:
 
+dscript.load_worker
+-------------
+
+.. automodule:: dscript.load_worker
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+dscript.loading
+-------------
+
+.. automodule:: dscript.loading
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 dscript.pretrained
 ------------------
 

docs/source/conf.py

@@ -25,7 +25,7 @@ copyright = "2021, Samuel Sledzieski, Rohit Singh"
 author = "Samuel Sledzieski, Rohit Singh"
 
 # The full version, including alpha/beta/rc tags
-release = "v2.0"
+release = "v0.3.0"
 master_doc = "index"