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Author	SHA1	Message	Date
David Juergens	b1ba556871	add .sh examples, gabarap pdb, import numpy	2025-06-22 17:56:19 -07:00
David Juergens	cd64c5ae72	bugfix readme	2025-06-22 17:56:19 -07:00
David Juergens	37e1d4da61	add rfpeptides img	2025-06-22 17:56:19 -07:00
David Juergens	ae036e30c6	Add RFpeptides code	2025-06-22 17:56:19 -07:00
Joseph Watson	b44206a2a7	correct example	2024-08-26 10:35:40 -07:00
Joseph Watson/Watchwell	31f8091be2	Update README.md	2024-08-26 10:35:40 -07:00
Joseph Watson	f6ac51ee84	Added example	2024-08-26 10:35:40 -07:00
Joseph Watson	b819fd5aa0	Added secondary structure specification	2024-08-26 10:35:40 -07:00
Joseph Watson/Watchwell	820bfdfade	Update LICENSE	2023-10-03 14:31:36 -07:00
Joseph Watson	46c0ef6803	Implemented inpaint_str and added example	2023-09-13 17:05:04 -07:00
Joseph Watson	ba8446eae0	Added input pdb for p53 case	2023-07-25 10:47:14 -07:00
Joseph Watson	47b738f604	Added p53 scaffolding example	2023-07-25 10:47:14 -07:00
Javier Castellanos	9149e5395a	Fixed incorrect variable name in contig parsing	2023-07-25 10:16:40 -07:00
Sergey Lyskov	5606075d45	updating rosetta-ci test script, adding unpacking ppi scaffolds	2023-06-28 08:59:51 -07:00
Rocco Moretti	9da13dc5b3	Update install instructions for model directory location. ... Be more specific about the location of the models directory. Addresses issue #80	2023-06-27 08:38:38 -07:00
Nick Randolph	b4f4c264a7	Fixed model_only_neighbors typo	2023-06-22 10:03:14 -07:00
Nick Randolph	8810bf28e5	Swapped SymGen arguments	2023-06-22 10:03:14 -07:00
Sergey Lyskov	25e9cda154	adding pdb-diff prefix to comparison test names	2023-06-01 12:41:09 -07:00
Sergey Lyskov	471b36ebe8	adding pdb-diff prefix to comparison test names	2023-06-01 12:41:09 -07:00
Sergey Lyskov	3ae829475d	adding .rosetta-ci dir to GitHub code-owners file	2023-06-01 12:41:09 -07:00
Sergey Lyskov	a191281e97	updating test config	2023-06-01 12:41:09 -07:00
Sergey Lyskov	58c310a66a	adding accounting of comparisons results	2023-06-01 12:41:09 -07:00
Sergey Lyskov	ba4a76af81	updating test-suite result calculation	2023-06-01 12:41:09 -07:00
Sergey Lyskov	74bdf45cb5	updating test-sets	2023-06-01 12:41:09 -07:00
Sergey Lyskov	9bb4c568d3	updating test files	2023-06-01 12:41:09 -07:00
Sergey Lyskov	060347773f	updating test_diffusion script	2023-06-01 12:41:09 -07:00
Sergey Lyskov	711e0b7aff	adding test_diffusion.py	2023-06-01 12:41:09 -07:00
Sergey Lyskov	db2997d237	updating test scripts	2023-06-01 12:41:09 -07:00
Sergey Lyskov	d9fd60c756	updating test files	2023-06-01 12:41:09 -07:00
Sergey Lyskov	6cf803f5cb	adding rosetta-ci	2023-06-01 12:41:09 -07:00
Rocco Moretti	06ae1cbcaf	Finalize removing icecream as a dependency. ... Icecream was removed from the installation dependencies, but was still being imported (but not used).	2023-05-30 03:45:50 -07:00
tmsincomb	e783762568	changed --parents to -p to be used by each OS	2023-05-30 03:44:43 -07:00
Joseph Watson	5f924fe2e3	Added examples, and updated README	2023-05-05 16:43:02 -07:00
Joseph Watson	0d629aa672	Code cleaning suggestions from arogozhnikov	2023-05-05 16:43:02 -07:00
Joseph Watson	5c6f2f1b14	Made necessary changes for integration tests based on example submissions	2023-05-05 16:43:02 -07:00
ISDementyev	49b9245204	Fixed 2 typos	2023-05-02 19:04:43 -07:00
Ryan Henderson	10fdde9d25	fix output directory for multipleseq example	2023-04-26 09:07:58 -07:00
Ryan Henderson	bee4a9a5c7	cleanup readme	2023-04-26 09:07:58 -07:00
Ryan Henderson	7b3cc0f682	add example of partial diffusion with multiple sequences	2023-04-26 09:07:58 -07:00
Ryan Henderson	7d725cedcd	Update README.md	2023-04-26 09:07:58 -07:00
Ryan Henderson	e0d10814d2	fix provide_seq contig processing to allow multiple sequences	2023-04-26 09:07:58 -07:00
Jungsub Lim	a9be807e06	Update README.md ... A10-25 would mean ('A',10),('A',11)...('A',25) rather than ('A',1),('A',2)...('A',10)	2023-04-25 16:05:59 -07:00
Brian Loyal	3139977cdb	Add instructions for running the Docker container	2023-04-21 13:10:10 -07:00
Brian Loyal	afcee27eed	Add Dockerfile with usage instructions	2023-04-21 13:10:10 -07:00
Brian Loyal	487c72068a	Add script to download model files	2023-04-21 13:10:10 -07:00
Brian Loyal	3e6eb96e35	Switch setup.py from distutils to setuptools	2023-04-21 13:10:10 -07:00
Nathaniel Bennett	92b83decf3	Add verbose checking for GPU	2023-04-14 13:05:24 -07:00
David Juergens	6adcf18465	Update README.md	2023-04-14 13:04:08 -07:00
Joseph Watson	7aa9cde82a	README updates, as suggested by jsrimr and eltociear	2023-04-05 10:40:06 -07:00
BrandonFrenz	a23be87268	changed the readme which refers to the variable ppi.hotspots to what seems to be the correct name, ppi.hotspot_res	2023-04-05 10:36:56 -07:00