Ryan Pachauri
12f16df5e3
Use /usr/bin/env for bash shebang.
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Using env honors user preference if they override bash in $PATH or use a linux distribution that does not store bash at /bin/bash.
Addresses the following pull request:
- https://github.com/google-deepmind/alphafold/pull/913
PiperOrigin-RevId: 813843957
Change-Id: I2fa35a7ecec8a17472ad84d27e09b266952fd14d
2025-10-01 11:42:30 -07:00
Ryan Pachauri
c7625926bc
Add rsync notice for for DB download.
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Addresses the following pull request:
- https://github.com/google-deepmind/alphafold/pull/1033
PiperOrigin-RevId: 813372673
Change-Id: I27ef523d86e3a0aeba432e12ceab7cd5f67b3478
2025-09-30 12:12:37 -07:00
Augustin Zidek
f78c589304
Update wwPDB paths from ftp.wwpdb.org to files.wwpdb.org.
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See https://www.wwpdb.org/news/news?year=2022#6303be3b707ecd4f63b3d3d9 for the wwPDB announcement.
PiperOrigin-RevId: 575762003
Change-Id: If25ea2777c33b03f03b27d54046c71753cb33038
2023-10-23 03:14:49 -07:00
Augustin Zidek
4bd3ff76cc
Use HTTPS instead of FTP to download all databases and switch to a faster mirror for UniRef90.
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PiperOrigin-RevId: 536973190
Change-Id: I358b78dbeb401cd066688af69eca7b50858b69d1
2023-06-01 03:34:10 -07:00
Augustin Zidek
9b18d6a966
Release code for v2.3.0
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PiperOrigin-RevId: 494507694
2022-12-11 11:06:50 +00:00
Sebastian Bodenstein
eba82a6521
Update multimer models to v2.
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PiperOrigin-RevId: 432150462
Change-Id: I508371123adf9dad20f4fe1082c7a6c7cd6815d4
2022-03-03 03:05:55 -08:00
Augustin Zidek
e93a9eb64f
Explain what to do if downloading PDB mmCIF files is too slow.
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PiperOrigin-RevId: 424887480
Change-Id: I4ea7a2aba785d037f49cf22c503ebebe3303e468
2022-01-28 09:30:40 -08:00
Augustin-Zidek
8173117130
Update license of AlphaFold parameters.
2022-01-19 14:58:43 +00:00
Augustin-Zidek
0be2b30b98
Add code for AlphaFold-Multimer.
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PiperOrigin-RevId: 407076987
2021-11-02 14:33:58 +00:00
Augustin Zidek
05db248e91
Remove a redundant space.
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PiperOrigin-RevId: 390355132
Change-Id: I920a80db674541af41ee83ef3d5bd5255c782ee9
2021-08-12 06:27:04 -07:00
Saran Tunyasuvunakool
0bab1bf84d
Add a Colab notebook, add reduced BFD, and various other fixes and improvements.
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PiperOrigin-RevId: 386228948
2021-07-22 15:16:43 +01:00
Tim Green
d26287ea57
Switch BFD download script to mirror.
2021-07-16 23:11:24 +00:00
Augustin-Zidek
1109480e6f
Initial release of AlphaFold.
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PiperOrigin-RevId: 384954738
2021-07-15 18:44:37 +01:00
