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fix support for sharded databases

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PiperOrigin-RevId: 836803355
Change-Id: Icc263c4a1ca153da99a71a336e1150b351cc4d27
This commit is contained in:
James Spencer
2025-11-25 14:00:57 -08:00
committed by Copybara-Service
parent e850301268
commit 2e3703e82a
1 changed files with 6 additions and 1 deletions
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7
run_alphafold.py
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@@ -41,6 +41,7 @@ from alphafold3.constants import chemical_components
import alphafold3.cpp
from alphafold3.data import featurisation
from alphafold3.data import pipeline
from alphafold3.data.tools import shards
from alphafold3.jax.attention import attention
from alphafold3.model import features
from alphafold3.model import model
@@ -667,7 +668,11 @@ def replace_db_dir(path_with_db_dir: str, db_dirs: Sequence[str]) -> str:
raise FileNotFoundError(
f'{path_with_db_dir} with ${{DB_DIR}} not found in any of {db_dirs}.'
)
if not os.path.exists(path_with_db_dir):
if (sharded_paths := shards.get_sharded_paths(path_with_db_dir)) is not None:
db_exists = all(os.path.exists(p) for p in sharded_paths)
else:
db_exists = os.path.exists(path_with_db_dir)
if not db_exists:
raise FileNotFoundError(f'{path_with_db_dir} does not exist.')
return path_with_db_dir