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Update the output documentation with case sensitivity and force_output_dir
PiperOrigin-RevId: 789369238 Change-Id: I2ccab4e220300646dba2f8882a82ad1e21c1523f
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## Output Directory Structure
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For every input job, AlphaFold 3 writes all its outputs in a directory called by
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the sanitized version of the job name. E.g. for job name "My first fold (test)",
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AlphaFold 3 will write its outputs in a directory called `my_first_fold_test`.
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If such directory already exists, AlphaFold 3 will append a timestamp to the
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directory name to avoid overwriting existing data.
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the sanitized version of the job name. E.g. for job name "My first fold (TEST)",
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AlphaFold 3 will write its outputs in a directory called `My_first_fold_TEST`
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(the case is respected). If such directory already exists, AlphaFold 3 will
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append a timestamp to the directory name to avoid overwriting existing data
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unless `--force_output_dir` is passed.
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The following structure is used within the output directory:
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