mirror of
https://github.com/Electrostatics/apbs.git
synced 2026-06-04 12:44:23 +08:00
Fixed python executable
This commit is contained in:
@@ -14,6 +14,7 @@ import subprocess
|
||||
from optparse import OptionParser
|
||||
from configparser import ConfigParser, NoOptionError
|
||||
from functools import reduce
|
||||
from sys import executable
|
||||
from apbs_check_forces import check_forces
|
||||
from apbs_check_results import check_results
|
||||
from apbs_check_intermediate_energies import check_energies
|
||||
@@ -37,9 +38,8 @@ def find_binary(binary_name, logger):
|
||||
logger.message(f"START_DIR:{start_dir}\n")
|
||||
paths = pathlib.Path(start_dir).rglob(f"**/{binary_name}")
|
||||
for idx in paths:
|
||||
if idx.is_file():
|
||||
if os.access(str(idx), os.X_OK):
|
||||
return str(idx)
|
||||
if idx.is_file() and os.access(str(idx), os.X_OK):
|
||||
return str(idx)
|
||||
|
||||
raise FileNotFoundError(f"Can't find file, {binary_name}")
|
||||
|
||||
@@ -69,8 +69,7 @@ def test_binary(binary_name, logger):
|
||||
|
||||
if not os.access(binary, os.X_OK):
|
||||
raise PermissionError(
|
||||
f"The apbs binary, {binary}, "
|
||||
+ "is not executable!"
|
||||
f"The apbs binary, {binary}, " + "is not executable!"
|
||||
)
|
||||
|
||||
try:
|
||||
@@ -185,22 +184,26 @@ def run_test(
|
||||
|
||||
# Run the setup, if any
|
||||
if setup:
|
||||
subprocess.call(setup.split())
|
||||
if re.match("^python", setup, flags=re.IGNORECASE):
|
||||
call_args = [sys.executable, *setup.split()[1:]]
|
||||
print(call_args)
|
||||
subprocess.call(call_args)
|
||||
else:
|
||||
subprocess.call(setup.split())
|
||||
|
||||
for (base_name, expected_results) in test_files:
|
||||
|
||||
# Get the name of the input file from the base name
|
||||
input_file = f"{base_name}.in"
|
||||
|
||||
logger.message("-" * 80 + "\n")
|
||||
# If the expected results is 'forces', do a forces test on the input
|
||||
if expected_results == "forces":
|
||||
logger.message("-" * 80 + "\n")
|
||||
logger.message(f"Testing forces from {input_file}\n\n")
|
||||
logger.log(f"Testing forces from {input_file}\n")
|
||||
start_time = datetime.datetime.now()
|
||||
check_forces(input_file, "polarforces", "apolarforces", logger)
|
||||
else:
|
||||
logger.message("-" * 80 + "\n")
|
||||
logger.message(f"Testing input file {input_file}\n\n")
|
||||
logger.log(f"Testing {input_file}\n")
|
||||
|
||||
|
||||
Reference in New Issue
Block a user