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49 lines
1.0 KiB
YAML
49 lines
1.0 KiB
YAML
path: 8coh.cif
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include:
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- chain:
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id: A
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res_index: ..126
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design:
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- chain:
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id: A
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res_index: 26..33,51..58,97..115
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structure_groups:
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- group:
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id: A
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visibility: 2
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- group:
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id: A
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visibility: 0
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res_index: 26..33,51..58,97..115
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exclude:
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- chain:
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id: A
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res_index: 26..28 # take out 3
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- chain:
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id: A
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res_index: 51..53 # take out 3
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- chain:
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id: A
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res_index: 97..103 # take out seven
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design_insertions:
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- insertion:
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id: A
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res_index: 26 # The res_index'th residue will be a designed one (starting to count from 1)
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num_residues: 1..5
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- insertion:
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id: A
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res_index: 51 # The res_index'th residue will be a designed one (starting to count from 1)
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num_residues: 1..5
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- insertion:
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id: A
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res_index: 98 # The res_index'th residue will be a designed one (starting to count from 1)
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num_residues: 1..14
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# reindex the residue index which is used in the positional encoding
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reset_res_index:
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- chain:
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id: A |