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Kevin Wu
2022-10-04 13:43:49 -07:00
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[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
We present a diffusion model for generating novel protein backbone structures.
We present a diffusion model for generating novel protein backbone structures. For more details, see our preprint on [arXiv](https://arxiv.org/abs/2209.15611).
![Animation of diffusion model protein folds over timesteps](plots/generated_0.gif)
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## Sampling protein backbones
To sample protein backbones, use the script `bin/sample.py`. Example commands to do this using the pretrained weights described above are as follows.
To sample protein backbones, use the script `bin/sample.py`. Example commands to do this using the pretrained weights described above are as follows. Sampling takes about ~5-7 minutes for 512 structures using an Nvidia 2080Ti GPU.
```bash
# To sample 256 backbones